Gene: Solyc02g085420.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc02g085420.4
  • Transcript Identifier Solyc02g085420.4.1
  • Gene Type Coding gene
  • Location SL4.0ch02 : 46340076-46345459 : negative

Gene Family Information

  • ID HOM05D004747
  • #Genes/#Species 155/92
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc02g085420.4.1
  • uniprot A0A3Q7F9R0
  • gene_id Solyc02g085420

Descriptions

  • Description U1 small nuclear ribonucleoprotein 70 kDa (AHRD V3.3 *-* A0A2G3AAH2_CAPAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IBA
GOA DatabasemRNA splicing, via spliceosome

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030619
IBA
IEA
GOA DatabaseU1 snRNA binding
GO:0030619
IEA
InterProU1 snRNA binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003729
IBA
GOA DatabasemRNA binding
GO:0017069
IBA
GOA DatabasesnRNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G50670

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0071004
IBA
GOA DatabaseU2-type prespliceosome
GO:0005685
IBA
GOA DatabaseU1 snRNP

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR034143 snRNP70, RNA recognition motif
IPR000504 RNA recognition motif domain
IPR022023 U1 small nuclear ribonucleoprotein of 70kDa N-terminal
IPR035979 RNA-binding domain superfamily
Mapman id Description
16.2.1.1.1 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).protein factor (U1-70K)