Gene: SGA_v2.0_scaffold276G46638

General Information

Structural Information

Species Striga asiatica
Gene Identifier SGA_v2.0_scaffold276G46638
Transcript Identifier SGA_v2.0_scaffold276T46638
Gene Type Coding gene
Location scaffold276 : 294431-301209 : negative

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D004747
#Genes/#Species 155/92
Phylogenetic origin

ID ORTHO05D006051
#Genes/#Species 148/92
Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

Descriptions

Short descriptions
Ortholog descriptions

product U1 small nuclear ribonucleoprotein 70 kDa, putative

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0000398	ISO	PLAZA Integrative Orthology	mRNA splicing, via spliceosome	AT3G50670

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0030619	IEA	InterPro	U1 snRNA binding
GO:0003676	IEA	InterPro	nucleic acid binding
GO:0005515	ISO	PLAZA Integrative Orthology	protein binding	AT3G50670

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005634	ISO	PLAZA Integrative Orthology	nucleus	AT3G50670

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR034143	snRNP70, RNA recognition motif
IPR022023	U1 small nuclear ribonucleoprotein of 70kDa N-terminal
IPR000504	RNA recognition motif domain
IPR035979	RNA-binding domain superfamily
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily

Mapman id	Description
16.2.1.1.1	RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).protein factor (U1-70K)