Gene: C07p25050

General Information

Structural Information

Species Brassica napus
Gene Identifier C07p25050
Transcript Identifier C07p25050
Gene Type Coding gene
Location C07 : 29582047-29586620 : negative

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D004747
#Genes/#Species 155/92
Phylogenetic origin

ID ORTHO05D006051
#Genes/#Species 148/92
Phylogenetic origin

Gene Duplication Information

Block Duplication Block duplicate

Labels

Identifiers

tid C07p25050.1_BnaDAR
v5 BnaC07g16560D
single_cell_id C07p25050.1-BnaDAR
ensembl GSBRNA2T00046170001

Descriptions

Ortholog descriptions

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0000398	ISO	PLAZA Integrative Orthology	mRNA splicing, via spliceosome	AT3G50670

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003676	IEA	InterPro	nucleic acid binding
GO:0005515	ISO	PLAZA Integrative Orthology	protein binding	AT3G50670
GO:0030619	ISO	PLAZA Homology (enrichment)	U1 snRNA binding	HOM05D004747

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005634	ISO	PLAZA Integrative Orthology	nucleus	AT3G50670

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR022023	U1 small nuclear ribonucleoprotein of 70kDa N-terminal
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily
IPR035979	RNA-binding domain superfamily

Mapman id	Description
16.2.1.1.1	RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).protein factor (U1-70K)