Gene: Os10g0115600

General Information

Structural Information

  • Species Oryza sativa ssp. japonica
  • Gene Identifier Os10g0115600
  • Transcript Identifier Os10t0115600-01
  • Gene Type Coding gene
  • Location chr10 : 1011007-1012822 : negative

Gene Family Information

  • ID HOM05D004747
  • #Genes/#Species 155/92
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Os10t0115600-01
  • MSU-ID LOC_Os10g02630.1
  • uniprot Q33BE1

Descriptions

  • Description Similar to U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70 kDa) (snRNP70) (U1-70K). Splice isoform Short.
  • Description Hypothetical conserved gene.
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IBA
IEA
GOA DatabasemRNA splicing, via spliceosome

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0030619
IBA
IEA
GOA DatabaseU1 snRNA binding
GO:0003729
IBA
GOA DatabasemRNA binding
GO:0017069
IBA
GOA DatabasesnRNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G50670

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0071004
IBA
GOA DatabaseU2-type prespliceosome
GO:0005685
IBA
GOA DatabaseU1 snRNP

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035979 RNA-binding domain superfamily
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR022023 U1 small nuclear ribonucleoprotein of 70kDa N-terminal
Mapman id Description
16.2.1.1.1 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).protein factor (U1-70K)