Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold172G39059 Striga asiatica HOM05D003686 ORTHO05D004322 3.0e-111 405.2 207 100.0
SGA_v2.0_scaffold36G14363 Striga asiatica HOM05D003686 ORTHO05D004322 2.5e-57 226.1 210 62.4
Nitab4.5_0000295g0050 Nicotiana tabacum HOM05D003686 ORTHO05D004322 3.7e-45 185.7 216 53.7
Nitab4.5_0004238g0080 Nicotiana tabacum HOM05D003686 ORTHO05D004322 3.7e-45 185.7 216 54.6
CAN.G1006.23 Capsicum annuum HOM05D003686 ORTHO05D004322 4.1e-44 182.2 199 58.3
Solyc06g008860.3 Solanum lycopersicum HOM05D003686 ORTHO05D004322 4.1e-44 182.2 218 52.8
PGSC0003DMG400021997 Solanum tuberosum HOM05D003686 ORTHO05D004322 4.1e-44 182.2 217 52.1
unitig_61.g26148 Utricularia gibba HOM05D003686 ORTHO05D004322 1.2e-43 180.6 192 56.2
Sopen06g003610 Solanum pennellii HOM05D003686 ORTHO05D004322 5.9e-43 178.3 217 51.6
SalBow6G6913 Salvia bowleyana HOM05D003686 ORTHO05D004322 8.6e-42 174.5 185 62.2
Cc01_g20160 Coffea canephora HOM05D003686 ORTHO05D004322 1.1e-41 174.1 231 51.5
Rhsim13G0017700 Rhododendron simsii HOM05D003686 ORTHO05D004322 3.6e-40 169.1 233 49.8
Manes.01G213100 Manihot esculenta HOM05D003686 ORTHO05D004322 1.8e-39 166.8 224 51.3
SalBow8G5349 Salvia bowleyana HOM05D003686 ORTHO05D004322 4.0e-39 165.6 181 60.8
MSTRG.12592 Avicennia marina HOM05D003686 ORTHO05D004322 2.6e-38 162.9 137 66.4
Potri.003G058400 Populus trichocarpa HOM05D003686 ORTHO05D004322 2.9e-37 159.5 221 49.3
Oeu022800.1 Olea europaea HOM05D003686 ORTHO05D004322 1.1e-36 157.5 101 75.2
Oeu022802.1 Olea europaea HOM05D003686 ORTHO05D004322 1.1e-36 157.5 101 75.2
TAR636G2878 Trochodendron aralioides HOM05D003686 ORTHO05D004322 1.4e-36 157.1 216 48.1
QL04p005272 Quercus lobata HOM05D003686 ORTHO05D004322 4.1e-36 155.6 225 48.9
Haze_04804 Corylus avellana HOM05D003686 ORTHO05D004322 5.4e-36 155.2 221 48.0
QL07p015848 Quercus lobata HOM05D003686 ORTHO05D004322 5.4e-36 155.2 225 50.2
PGR031G1643 Punica granatum HOM05D003686 ORTHO05D004322 4.6e-35 152.1 170 56.5
Glyma.10G021900 Glycine max HOM05D003686 ORTHO05D004322 7.8e-35 151.4 222 49.1
Nn1g08910 Nelumbo nucifera HOM05D003686 ORTHO05D004322 7.8e-35 151.4 215 48.8
Eucgr.A00286 Eucalyptus grandis HOM05D003686 ORTHO05D004322 1.3e-34 150.6 214 48.6
Sed0010038 Sechium edule HOM05D003686 ORTHO05D004322 6.6e-34 148.3 215 48.8
Aqoxy2G03146 Aquilegia oxysepala HOM05D003686 ORTHO05D004322 1.5e-33 147.1 214 49.5
ECA248G2178 Erigeron canadensis HOM05D003686 ORTHO05D004322 4.3e-33 145.6 148 56.8
Ca_09109_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 5.6e-33 145.2 201 51.7
Manes.05G068800 Manihot esculenta HOM05D003686 ORTHO05D004322 9.5e-33 144.4 217 46.5
Migut.N02118 Erythranthe guttata HOM05D003686 ORTHO05D004322 1.2e-32 144.1 130 65.4
Migut.O00643 Erythranthe guttata HOM05D003686 ORTHO05D004322 1.2e-32 144.1 130 65.4
CiPaw.07G099200 Carya illinoinensis HOM05D003686 ORTHO05D004322 1.6e-32 143.7 216 49.5
Gorai.004G053600 Gossypium raimondii HOM05D003686 ORTHO05D004322 2.1e-32 143.3 221 47.1
TWI23G0547 Tripterygium wilfordii HOM05D003686 ORTHO05D004322 3.6e-32 142.5 133 59.4
Actinidia00703 Actinidia chinensis HOM05D003686 ORTHO05D004322 4.7e-32 142.1 221 45.7
TAR362G1277 Trochodendron aralioides HOM05D003686 ORTHO05D004322 4.7e-32 142.1 221 47.1
Lsat_1_v5_gn_5_188760 Lactuca sativa HOM05D003686 ORTHO05D004322 6.2e-32 141.7 217 47.5
ATR0706G002 Amborella trichopoda HOM05D003686 ORTHO05D004322 8.0e-32 141.4 213 46.5
Gohir.A08G043900 Gossypium hirsutum HOM05D003686 ORTHO05D004322 1.4e-31 140.6 222 48.6
QL93p0358_0011 Quercus lobata HOM05D003686 ORTHO05D004322 1.4e-31 140.6 225 48.0
Cpa.g.sc9.157 Carica papaya HOM05D003686 ORTHO05D004322 1.8e-31 140.2 162 54.3
VMungo0720G0802 Vigna mungo HOM05D003686 ORTHO05D004322 1.8e-31 140.2 221 46.2
GSVIVG01011011001 Vitis vinifera HOM05D003686 ORTHO05D004322 1.8e-31 140.2 141 55.3
CANSAT78G2257 Cannabis sativa HOM05D003686 ORTHO05D004322 2.3e-31 139.8 229 46.3
HanXRQChr01g0002781 Helianthus annuus HOM05D003686 ORTHO05D004322 2.3e-31 139.8 234 46.2
COL.COLO4_08036 Corchorus olitorius HOM05D003686 ORTHO05D004322 3.1e-31 139.4 223 46.2
Gohir.D08G053600 Gossypium hirsutum HOM05D003686 ORTHO05D004322 3.1e-31 139.4 217 47.0
Gohir.D11G123300 Gossypium hirsutum HOM05D003686 ORTHO05D004322 3.1e-31 139.4 223 47.1
Peaxi162Scf00936g00218 Petunia axillaris HOM05D003686 ORTHO05D004322 3.1e-31 139.4 178 53.4
vmacro17192 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 3.1e-31 139.4 213 47.9
Lalb_Chr06g0163281 Lupinus albus HOM05D003686 ORTHO05D004322 4.0e-31 139.0 222 45.5
TAR365G0683 Trochodendron aralioides HOM05D003686 ORTHO05D004322 6.8e-31 138.3 224 46.0
TWI14G0352 Tripterygium wilfordii HOM05D003686 ORTHO05D004322 1.5e-30 137.1 225 46.7
MSTRG.21821 Avicennia marina HOM05D003686 ORTHO05D004322 2.0e-30 136.7 192 48.4
Lalb_Chr02g0143061 Lupinus albus HOM05D003686 ORTHO05D004322 2.0e-30 136.7 219 43.8
THA.LOC104826011 Tarenaya hassleriana HOM05D003686 ORTHO05D004322 2.0e-30 136.7 143 56.6
DCAR_007018 Daucus carota HOM05D003686 ORTHO05D004322 3.4e-30 136.0 216 47.2
RcHm_v2.0_Chr6g0292481 Rosa chinensis HOM05D003686 ORTHO05D004322 4.4e-30 135.6 218 45.4
Glyma.02G152300 Glycine max HOM05D003686 ORTHO05D004322 1.7e-29 133.7 220 46.4
Ciclev10022350m.g Citrus clementina HOM05D003686 ORTHO05D004322 2.2e-29 133.3 213 44.1
HanXRQChr11g0330151 Helianthus annuus HOM05D003686 ORTHO05D004322 4.9e-29 132.1 206 47.1
ECA247G2101 Erigeron canadensis HOM05D003686 ORTHO05D004322 8.3e-29 131.3 266 39.8
DCAR_012430 Daucus carota HOM05D003686 ORTHO05D004322 1.4e-28 130.6 190 46.3
Cfa010467 Carpinus fangiana HOM05D003686 ORTHO05D004322 1.9e-28 130.2 134 53.0
Dinv11293 Davidia involucrata HOM05D003686 ORTHO05D004322 1.9e-28 130.2 217 46.1
MD03G1275200 Malus domestica HOM05D003686 ORTHO05D004322 1.9e-28 130.2 184 48.4
FvH4_2g24650 Fragaria vesca HOM05D003686 ORTHO05D004322 2.4e-28 129.8 219 46.6
FAN20G0133 Fragaria x ananassa HOM05D003686 ORTHO05D004322 2.4e-28 129.8 218 45.9
FAN27G0391 Fragaria x ananassa HOM05D003686 ORTHO05D004322 2.4e-28 129.8 218 45.9
Atru.chr5.1287 Acer truncatum HOM05D003686 ORTHO05D004322 3.2e-28 129.4 217 44.7
Dinv11297 Davidia involucrata HOM05D003686 ORTHO05D004322 4.1e-28 129.0 217 46.1
Solyc01g067830.3 Solanum lycopersicum HOM05D003686 ORTHO05D004322 4.1e-28 129.0 221 43.0
Lj1g0025208 Lotus japonicus HOM05D003686 ORTHO05D004322 5.4e-28 128.6 223 44.8
Ca_10377_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 1.2e-27 127.5 222 42.8
Ca_29655_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 1.2e-27 127.5 222 42.8
FAN15G3346 Fragaria x ananassa HOM05D003686 ORTHO05D004322 1.2e-27 127.5 218 45.9
CAN.G185.6 Capsicum annuum HOM05D003686 ORTHO05D004322 1.6e-27 127.1 218 42.2
Prupe.8G251800 Prunus persica HOM05D003686 ORTHO05D004322 2.1e-27 126.7 132 53.8
Ah.12g061550 Amaranthus hybridus HOM05D003686 ORTHO05D004322 3.5e-27 125.9 149 53.0
AUR62025901 Chenopodium quinoa HOM05D003686 ORTHO05D004322 3.5e-27 125.9 206 46.1
AUR62025902 Chenopodium quinoa HOM05D003686 ORTHO05D004322 3.5e-27 125.9 206 46.1
Mapoly0103s0046 Marchantia polymorpha HOM05D003686 ORTHO05D004322 3.5e-27 125.9 235 42.6
Duzib133G0241 Durio zibethinus HOM05D003686 ORTHO05D004322 6.0e-27 125.2 226 45.6
Migut.N00130 Erythranthe guttata HOM05D003686 ORTHO05D004322 6.0e-27 125.2 217 42.4
Os02g0266100 Oryza sativa ssp. japonica HOM05D003686 ORTHO05D004322 7.8e-27 124.8 158 49.4
Gohir.A11G118400 Gossypium hirsutum HOM05D003686 ORTHO05D004322 1.0e-26 124.4 220 42.7
Medtr1g088990 Medicago truncatula HOM05D003686 ORTHO05D004322 1.0e-26 124.4 140 53.6
CDE11G0890 Ceratophyllum demersum HOM05D003686 ORTHO05D004322 1.3e-26 124.0 168 47.6
Gorai.007G132200 Gossypium raimondii HOM05D003686 ORTHO05D004322 1.3e-26 124.0 220 42.3
Thhalv10028986m.g Eutrema salsugineum HOM05D003686 ORTHO05D004322 2.3e-26 123.2 132 54.5
CsaV3_7G028310 Cucumis sativus L. HOM05D003686 ORTHO05D004322 3.0e-26 122.9 137 52.6
Eucgr.B02749 Eucalyptus grandis HOM05D003686 ORTHO05D004322 3.0e-26 122.9 210 42.9
Hma1.2p1_0643F.1_g194700 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 3.9e-26 122.5 131 53.4
Hma1.2p1_0643F.1_g194711 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 3.9e-26 122.5 131 53.4
Phvul.007G166600 Phaseolus vulgaris HOM05D003686 ORTHO05D004322 3.9e-26 122.5 213 41.8
Sp6g03160 Schrenkiella parvula HOM05D003686 ORTHO05D004322 5.1e-26 122.1 132 53.8
Thecc.10G102800 Theobroma cacao HOM05D003686 ORTHO05D004322 5.1e-26 122.1 123 55.3
Sabra03G0032800 Salix brachista HOM05D003686 ORTHO05D004322 1.1e-25 120.9 203 48.3
BraA02t07500Z Brassica rapa HOM05D003686 ORTHO05D004322 1.5e-25 120.6 155 51.0
MELO3C015891.2 Cucumis melo HOM05D003686 ORTHO05D004322 1.5e-25 120.6 133 52.6
PSO801G0146 Papaver somniferum HOM05D003686 ORTHO05D004322 1.5e-25 120.6 222 45.0
arahy.Tifrunner.gnm1.ann1.MV1AMG Arachis hypogaea HOM05D003686 ORTHO05D004322 1.9e-25 120.2 222 42.8
Sopen01g029780 Solanum pennellii HOM05D003686 ORTHO05D004322 1.9e-25 120.2 215 41.9
AT4G03120 Arabidopsis thaliana HOM05D003686 ORTHO05D004322 2.5e-25 119.8 130 56.2
BcaB01g02510 Brassica carinata HOM05D003686 ORTHO05D004322 2.5e-25 119.8 128 53.1
BcaB05g23688 Brassica carinata HOM05D003686 ORTHO05D004322 5.6e-25 118.6 132 53.0
BcaB05g23689 Brassica carinata HOM05D003686 ORTHO05D004322 5.6e-25 118.6 132 53.0
BcaC01g06704 Brassica carinata HOM05D003686 ORTHO05D004322 5.6e-25 118.6 128 52.3
CARHR251560 Cardamine hirsuta HOM05D003686 ORTHO05D004322 5.6e-25 118.6 190 46.3
AUR62029649 Chenopodium quinoa HOM05D003686 ORTHO05D004322 5.6e-25 118.6 208 44.2
THA.LOC104817532 Tarenaya hassleriana HOM05D003686 ORTHO05D004322 5.6e-25 118.6 148 49.3
MD11G1297300 Malus domestica HOM05D003686 ORTHO05D004322 7.3e-25 118.2 191 45.5
BolC3t16013H Brassica oleracea HOM05D003686 ORTHO05D004322 9.5e-25 117.9 135 51.9
TPR.G15798 Trifolium pratense HOM05D003686 ORTHO05D004322 1.2e-24 117.5 226 42.9
A03p30600 Brassica napus HOM05D003686 ORTHO05D004322 2.8e-24 116.3 207 43.5
Medtr7g107640 Medicago truncatula HOM05D003686 ORTHO05D004322 1.1e-23 114.4 197 43.7
Nn2g12370 Nelumbo nucifera HOM05D003686 ORTHO05D004322 1.4e-23 114.0 201 43.8
Sc25g0004660 Simmondsia chinensis HOM05D003686 ORTHO05D004322 3.1e-23 112.8 225 41.8
C03p37160 Brassica napus HOM05D003686 ORTHO05D004322 6.8e-23 111.7 186 43.0
BraA03t12240Z Brassica rapa HOM05D003686 ORTHO05D004322 6.8e-23 111.7 205 42.9
Sed0008045 Sechium edule HOM05D003686 ORTHO05D004322 6.8e-23 111.7 104 58.7
Psat3g024960 Pisum sativum HOM05D003686 ORTHO05D004322 8.9e-23 111.3 193 44.6
A09p02440 Brassica napus HOM05D003686 ORTHO05D004322 1.2e-22 110.9 126 50.0
BraA09t35891Z Brassica rapa HOM05D003686 ORTHO05D004322 1.2e-22 110.9 126 50.0
ClCG09G006530 Citrullus lanatus HOM05D003686 ORTHO05D004322 1.5e-22 110.5 219 42.0
Lj5g0005016 Lotus japonicus HOM05D003686 ORTHO05D004322 1.5e-22 110.5 228 39.5
Mapoly0087s0074 Marchantia polymorpha HOM05D003686 ORTHO05D004322 7.5e-22 108.2 197 44.7
Zm00001eb203990 Zea mays HOM05D003686 ORTHO05D004322 7.5e-22 108.2 152 49.3
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 1.3e-21 107.5 246 38.2
AagrBONN_evm.TU.Sc2ySwM_228.930 Anthoceros agrestis HOM05D003686 ORTHO05D004322 2.2e-21 106.7 84 65.5
A02p25120 Brassica napus HOM05D003686 ORTHO05D004322 2.2e-21 106.7 152 46.7
Peaxi162Scf01364g00015 Petunia axillaris HOM05D003686 ORTHO05D004322 2.2e-21 106.7 110 51.8
CSS0048633 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 2.9e-21 106.3 221 41.6
Lj2P1184T34 Lonicera japonica HOM05D003686 ORTHO05D004322 4.9e-21 105.5 197 46.2
Hma1.2p1_0643F.1_g194695 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 6.4e-21 105.1 188 43.1
Hma1.2p1_0643F.1_g194710 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 6.4e-21 105.1 188 43.1
COL.COLO4_34092 Corchorus olitorius HOM05D003686 ORTHO05D004322 8.3e-21 104.8 101 56.4
PSO339G4974 Papaver somniferum HOM05D003686 ORTHO05D004322 8.3e-21 104.8 216 43.5
Pp3c12_26180 Physcomitrium patens HOM05D003686 ORTHO05D004322 8.3e-21 104.8 142 49.3
BcaB01g01979 Brassica carinata HOM05D003686 ORTHO05D004322 1.4e-20 104.0 201 40.8
Pp3c4_170 Physcomitrium patens HOM05D003686 ORTHO05D004322 1.4e-20 104.0 142 48.6
Carub.0006s3393 Capsella rubella HOM05D003686 ORTHO05D004322 1.9e-20 103.6 143 48.3
EL10Ac2g03326 Beta vulgaris HOM05D003686 ORTHO05D004322 5.4e-20 102.1 205 42.9
CSS0007511 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 9.2e-20 101.3 115 54.8
CSS0037271 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 9.2e-20 101.3 115 54.8
BolC9t53184H Brassica oleracea HOM05D003686 ORTHO05D004322 4.6e-19 99.0 199 40.2
Duzib138G0197 Durio zibethinus HOM05D003686 ORTHO05D004322 6.0e-19 98.6 219 38.4
arahy.Tifrunner.gnm1.ann1.TAZ1K7 Arachis hypogaea HOM05D003686 ORTHO05D004322 7.8e-19 98.2 253 37.5
FAN24G2968 Fragaria x ananassa HOM05D003686 ORTHO05D004322 7.8e-19 98.2 201 43.8
BolC2t10013H Brassica oleracea HOM05D003686 ORTHO05D004322 1.3e-18 97.4 186 40.9
CiPaw.08G100800 Carya illinoinensis HOM05D003686 ORTHO05D004322 1.3e-18 97.4 219 38.4
Psat3g182400 Pisum sativum HOM05D003686 ORTHO05D004322 3.0e-18 96.3 87 55.2
HPP92_021468 Vanilla planifolia HOM05D003686 ORTHO05D004322 3.0e-18 96.3 74 63.5
Psat0s3642g0040 Pisum sativum HOM05D000068 ORTHO05D025728 1.9e-17 93.6 87 56.3
vmacro14959 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 1.9e-17 93.6 177 42.9
Nitab4.5_0001624g0040 Nicotiana tabacum HOM05D003686 ORTHO05D004322 4.3e-17 92.4 190 40.0
SGA_v2.0_scaffold89G27564 Striga asiatica HOM05D003686 ORTHO05D004322 4.3e-17 92.4 181 38.1
PGSC0003DMG400022854 Solanum tuberosum HOM05D003686 ORTHO05D004322 5.6e-17 92.0 217 38.2
BcaC03g16209 Brassica carinata HOM05D003686 ORTHO05D004322 7.3e-17 91.7 192 39.6
Nitab4.5_0001149g0030 Nicotiana tabacum HOM05D003686 ORTHO05D004322 9.5e-17 91.3 194 39.2
vmacro02511 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 3.6e-16 89.4 99 52.5
FAN20G1534 Fragaria x ananassa HOM05D003686 ORTHO05D004322 4.7e-16 89.0 201 41.3
HPP92_021461 Vanilla planifolia HOM05D003686 ORTHO05D004322 1.1e-15 87.8 193 40.9
Psat6g168000 Pisum sativum HOM05D003686 ORTHO05D004322 3.4e-14 82.8 208 39.9
Hund24902 Selenicereus undatus HOM05D003686 ORTHO05D004322 1.7e-13 80.5 150 44.7
unitig_22.g6331 Utricularia gibba HOM05D003686 ORTHO05D004322 1.7e-13 80.5 144 36.8
Peaxi162Scf01067g00002 Petunia axillaris HOM05D003686 ORTHO05D004322 1.6e-11 73.9 109 44.0
Cre09.g401300 Chlamydomonas reinhardtii HOM05D003686 ORTHO05D004322 1.3e-10 70.9 54 61.1
C09p02540 Brassica napus HOM05D003686 ORTHO05D004322 2.8e-08 63.2 184 35.3
Duzib211G0369 Durio zibethinus HOM05D003686 ORTHO05D004322 8.1e-08 61.6 81 46.9
PRCOL_00005459 Prasinoderma coloniale HOM05D003686 ORTHO05D004322 9.0e-07 58.2 90 40.0
vmacro14957 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 1.5e-06 57.4 221 34.4
Lj3A810T51 Lonicera japonica HOM05D003686 ORTHO05D004322 3.4e-06 56.2 188 34.6


User provided reference genes

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