Gene: HPP92_021468

General Information

Structural Information

Species Vanilla planifolia
Gene Identifier HPP92_021468
Transcript Identifier Vpl11Ag21468.1
Gene Type Coding gene
Location CM028160.1 : 26434519-26459749 : negative

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D003686
#Genes/#Species 186/94
Phylogenetic origin

ID ORTHO05D004322
#Genes/#Species 184/94
Phylogenetic origin

Gene Duplication Information

Tandem Duplication Tandem duplicate

Labels

Identifiers

tid Vpl11Ag21468.1
pid KAG0461171.1

Descriptions

Short descriptions
Ortholog descriptions

Description U1 small nuclear ribonucleoprotein C *-*

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0000387	IEA	InterPro	spliceosomal snRNP assembly
GO:0000398	IEA	InterPro	mRNA splicing, via spliceosome

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003676	IEA	InterPro	nucleic acid binding
GO:0008270	IEA	InterPro	zinc ion binding

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005685	IEA	InterPro	U1 snRNP

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR041469	Subtilisin-like protease, fibronectin type-III domain
IPR003604	Matrin/U1-C-like, C2H2-type zinc finger
IPR017340	U1 small nuclear ribonucleoprotein C
IPR013085	U1-C, C2H2-type zinc finger
IPR036236	Zinc finger C2H2 superfamily

Mapman id	Description
16.2.1.1.3	RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).protein factor (U1C)