Gene: Sed0008045

General Information

Structural Information

Species Sechium edule
Gene Identifier Sed0008045
Transcript Identifier Sed0008045.2
Gene Type Coding gene
Location LG09 : 36104181-36114695 : positive

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D003686
#Genes/#Species 186/94
Phylogenetic origin

ID ORTHO05D004322
#Genes/#Species 184/94
Phylogenetic origin

Gene Duplication Information

Block Duplication Block duplicate

Labels

Identifiers

tid Sed0008045.2

Descriptions

Ortholog descriptions

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0000387	IEA	InterPro	spliceosomal snRNP assembly
GO:0000398	IEA	InterPro	mRNA splicing, via spliceosome

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0008270	IEA	InterPro	zinc ion binding
GO:0003676	IEA	InterPro	nucleic acid binding

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005685	IEA	InterPro	U1 snRNP

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR013085	U1-C, C2H2-type zinc finger
IPR036236	Zinc finger C2H2 superfamily
IPR003604	Matrin/U1-C-like, C2H2-type zinc finger
IPR017340	U1 small nuclear ribonucleoprotein C

Mapman id	Description
16.2.1.1.3	RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).protein factor (U1C)