Gene: Solyc01g067830.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc01g067830.3
  • Transcript Identifier Solyc01g067830.3.1
  • Gene Type Coding gene
  • Location SL4.0ch01 : 69572615-69576439 : negative

Gene Family Information

  • ID HOM05D003686
  • #Genes/#Species 186/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc01g067830.3.1
  • uniprot A0A3Q7EGR2
  • gene_id Solyc01g067830

Descriptions

  • Description U1 small nuclear ribonucleoprotein C (AHRD V3.3 *** A0A2G3ALC7_CAPAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000395
IBA
IEA
GOA DatabasemRNA 5'-splice site recognition
GO:0000398
IEA
GOA DatabasemRNA splicing, via spliceosome
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0000387
IEA
GOA Databasespliceosomal snRNP assembly
GO:0000387
IEA
InterProspliceosomal snRNP assembly

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030619
IEA
GOA DatabaseU1 snRNA binding
GO:0030627
IBA
GOA Databasepre-mRNA 5'-splice site binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0008270
IEA
GOA Databasezinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0003729
IEA
GOA DatabasemRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005685
IBA
IEA
GOA DatabaseU1 snRNP
GO:0005685
IEA
InterProU1 snRNP
GO:0005634
IEA
GOA Databasenucleus
GO:0000243
IEA
GOA Databasecommitment complex
GO:0071004
IEA
GOA DatabaseU2-type prespliceosome

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR017340 U1 small nuclear ribonucleoprotein C
IPR013085 U1-C, C2H2-type zinc finger
IPR003604 Matrin/U1-C-like, C2H2-type zinc finger
IPR036236 Zinc finger C2H2 superfamily
Mapman id Description
16.2.1.1.3 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).protein factor (U1C)