Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold153G37012 Striga asiatica HOM05D004484 ORTHO05D005370 0.0e+00 1368.2 691 100.0
Migut.B01635 Erythranthe guttata HOM05D004484 ORTHO05D005370 0.0e+00 1115.1 688 81.4
MSTRG.20748 Avicennia marina HOM05D004484 ORTHO05D005370 0.0e+00 1102.8 693 78.5
Oeu055487.1 Olea europaea HOM05D004484 ORTHO05D005370 2.6e-308 1061.6 689 75.5
Cc02_g36700 Coffea canephora HOM05D004484 ORTHO05D005370 1.0e-296 1023.1 687 73.4
Dinv32377 Davidia involucrata HOM05D004484 ORTHO05D005370 2.2e-296 1021.9 692 73.8
Nitab4.5_0000457g0330 Nicotiana tabacum HOM05D004484 ORTHO05D005370 1.5e-295 1019.2 691 73.1
PGSC0003DMG400012761 Solanum tuberosum HOM05D004484 ORTHO05D005370 8.3e-291 1003.4 691 72.1
CAN.G388.13 Capsicum annuum HOM05D004484 ORTHO05D005370 3.5e-289 998.0 687 71.0
Peaxi162Scf00021g01723 Petunia axillaris HOM05D004484 ORTHO05D005370 2.9e-288 995.0 691 71.1
Lj7A528T57 Lonicera japonica HOM05D004484 ORTHO05D005370 3.8e-288 994.6 700 72.0
Solyc01g091350.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 8.0e-286 986.9 691 70.2
Sopen01g037090 Solanum pennellii HOM05D004484 ORTHO05D005370 4.4e-284 981.1 691 69.6
GSVIVG01027610001 Vitis vinifera HOM05D004484 ORTHO05D005370 2.9e-283 978.4 673 71.8
Prupe.2G145600 Prunus persica HOM05D004484 ORTHO05D005370 4.9e-283 977.6 689 70.2
ECA234G1700 Erigeron canadensis HOM05D004484 ORTHO05D005370 8.3e-283 976.9 690 70.7
Hma1.2p1_0086F.1_g044870 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 8.3e-283 976.9 686 71.4
CiPaw.01G262000 Carya illinoinensis HOM05D004484 ORTHO05D005370 1.1e-282 976.5 690 69.0
QL08p052472 Quercus lobata HOM05D004484 ORTHO05D005370 1.8e-282 975.7 689 70.2
TWI23G0227 Tripterygium wilfordii HOM05D004484 ORTHO05D005370 3.2e-282 974.9 692 69.7
Nitab4.5_0005372g0070 Nicotiana tabacum HOM05D004484 ORTHO05D005370 4.6e-281 971.1 701 69.9
DCAR_015907 Daucus carota HOM05D004484 ORTHO05D005370 4.3e-279 964.5 687 69.9
MD07G1121000 Malus domestica HOM05D004484 ORTHO05D005370 8.0e-278 960.3 690 69.9
Manes.01G265900 Manihot esculenta HOM05D004484 ORTHO05D005370 2.3e-277 958.7 689 68.8
Atru.chr5.309 Acer truncatum HOM05D004484 ORTHO05D005370 2.9e-275 951.8 686 68.7
HanXRQChr16g0520161 Helianthus annuus HOM05D004484 ORTHO05D005370 2.9e-275 951.8 689 68.4
Haze_16815 Corylus avellana HOM05D004484 ORTHO05D005370 4.9e-275 951.0 746 63.9
CSS0036976 Camellia sinensis var. sinensis HOM05D004484 ORTHO05D005370 2.4e-274 948.7 694 70.2
PSO478G5008 Papaver somniferum HOM05D004484 ORTHO05D005370 4.1e-274 948.0 691 68.7
Potri.014G069700 Populus trichocarpa HOM05D004484 ORTHO05D005370 9.2e-274 946.8 685 69.3
Sed0020955 Sechium edule HOM05D004484 ORTHO05D005370 1.2e-273 946.4 689 68.1
Aqoxy5G00403 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 7.8e-273 943.7 690 68.4
Nn1g01233 Nelumbo nucifera HOM05D004484 ORTHO05D005370 1.0e-272 943.3 685 68.2
Thecc.01G376200 Theobroma cacao HOM05D004484 ORTHO05D005370 1.0e-272 943.3 687 68.4
Eucgr.E01418 Eucalyptus grandis HOM05D004484 ORTHO05D005370 1.3e-272 943.0 690 67.7
ClCG05G002220 Citrullus lanatus HOM05D004484 ORTHO05D005370 3.0e-272 941.8 690 68.0
TAR629G2468 Trochodendron aralioides HOM05D004484 ORTHO05D005370 3.3e-271 938.3 668 69.2
CsaV3_3G009680 Cucumis sativus L. HOM05D004484 ORTHO05D005370 4.3e-271 937.9 690 67.0
CANSAT56G4533 Cannabis sativa HOM05D004484 ORTHO05D005370 1.1e-269 933.3 691 68.3
Sc02g0002590 Simmondsia chinensis HOM05D004484 ORTHO05D005370 1.1e-269 933.3 670 68.2
FvH4_7g11900 Fragaria vesca HOM05D004484 ORTHO05D005370 3.1e-269 931.8 689 66.0
Lsat_1_v5_gn_4_43240 Lactuca sativa HOM05D004484 ORTHO05D005370 1.2e-268 929.9 685 68.5
FAN01G0628 Fragaria x ananassa HOM05D004484 ORTHO05D005370 3.4e-268 928.3 689 65.5
CANSAT56G1200 Cannabis sativa HOM05D004484 ORTHO05D005370 5.8e-268 927.5 691 68.0
MBI12_g10758_MAGBIO Magnolia biondii HOM05D004484 ORTHO05D005370 5.8e-268 927.5 721 65.6
Lalb_Chr13g0291731 Lupinus albus HOM05D004484 ORTHO05D005370 6.4e-267 924.1 689 67.1
FAN10G1483 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.9e-266 922.5 689 65.7
Ca_19886_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 2.4e-266 922.2 689 66.6
FAN06G1787 Fragaria x ananassa HOM05D004484 ORTHO05D005370 7.1e-266 920.6 689 65.6
FAN06G3319 Fragaria x ananassa HOM05D004484 ORTHO05D005370 9.2e-266 920.2 689 65.5
FAN10G2369 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.1e-265 919.1 689 65.6
Cpa.g.sc18.115 Carica papaya HOM05D004484 ORTHO05D005370 3.5e-265 918.3 690 66.2
Medtr4g023560 Medicago truncatula HOM05D004484 ORTHO05D005370 9.5e-263 910.2 685 66.6
Lj3g0013484 Lotus japonicus HOM05D004484 ORTHO05D005370 2.8e-262 908.7 686 66.9
EL10Ac1g00900 Beta vulgaris HOM05D004484 ORTHO05D005370 3.6e-262 908.3 710 63.0
Ciclev10019016m.g Citrus clementina HOM05D004484 ORTHO05D005370 1.8e-261 906.0 690 66.8
AUR62004221 Chenopodium quinoa HOM05D004484 ORTHO05D005370 7.6e-260 900.6 721 63.5
Ca_27059_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 2.2e-259 899.0 689 65.5
Psat7g233440 Pisum sativum HOM05D004484 ORTHO05D005370 2.9e-259 898.7 689 65.6
MELO3C006188.2 Cucumis melo HOM05D004484 ORTHO05D005370 1.1e-258 896.7 655 67.3
PGR042G0667 Punica granatum HOM05D004484 ORTHO05D005370 1.1e-258 896.7 691 64.1
vmacro13399 Vaccinium macrocarpon HOM05D004484 ORTHO05D005370 2.4e-258 895.6 691 66.0
Gohir.A11G080700 Gossypium hirsutum HOM05D004484 ORTHO05D005370 9.2e-258 893.6 690 64.6
Gorai.007G091100 Gossypium raimondii HOM05D004484 ORTHO05D005370 1.2e-257 893.3 690 64.6
arahy.Tifrunner.gnm1.ann1.V1M046 Arachis hypogaea HOM05D004484 ORTHO05D005370 6.0e-257 891.0 686 65.0
arahy.Tifrunner.gnm1.ann1.6K85L9 Arachis hypogaea HOM05D004484 ORTHO05D005370 7.8e-257 890.6 686 65.2
arahy.Tifrunner.gnm1.ann1.HW1IVJ Arachis hypogaea HOM05D004484 ORTHO05D005370 7.8e-257 890.6 686 65.2
Gohir.D11G085300 Gossypium hirsutum HOM05D004484 ORTHO05D005370 1.3e-256 889.8 690 64.6
arahy.Tifrunner.gnm1.ann1.Q9SWB6 Arachis hypogaea HOM05D004484 ORTHO05D005370 6.6e-256 887.5 686 64.7
Sabra14G0049400 Salix brachista HOM05D004484 ORTHO05D005370 3.3e-255 885.2 699 65.1
Lalb_Chr12g0208261 Lupinus albus HOM05D004484 ORTHO05D005370 4.7e-254 881.3 690 64.1
Glyma.05G125700 Glycine max HOM05D004484 ORTHO05D005370 3.8e-251 871.7 687 64.2
Aqoxy3G02138 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 8.4e-251 870.5 687 63.3
Phvul.002G205800 Phaseolus vulgaris HOM05D004484 ORTHO05D005370 1.1e-250 870.2 685 63.8
Ah.13g073490 Amaranthus hybridus HOM05D004484 ORTHO05D005370 1.6e-249 866.3 711 61.9
FAN03G1897 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.8e-245 852.8 689 62.4
VMungo0251G1206 Vigna mungo HOM05D004484 ORTHO05D005370 1.2e-244 850.1 685 61.6
THA.LOC104817247 Tarenaya hassleriana HOM05D004484 ORTHO05D005370 1.6e-241 839.7 686 61.1
BcaB04g17469 Brassica carinata HOM05D004484 ORTHO05D005370 1.3e-240 836.6 691 58.8
AT1G48050 Arabidopsis thaliana HOM05D004484 ORTHO05D005370 3.7e-238 828.6 687 59.7
Carub.0001s3716 Capsella rubella HOM05D004484 ORTHO05D005370 3.7e-238 828.6 688 58.9
GSVIVG01027609001 Vitis vinifera HOM05D004484 ORTHO05D005370 1.1e-237 827.0 657 63.6
Sp1g35020 Schrenkiella parvula HOM05D004484 ORTHO05D005370 3.1e-237 825.5 679 58.3
BraSC267t45947Z Brassica rapa HOM05D004484 ORTHO05D005370 5.3e-237 824.7 685 57.8
BolC8t47375H Brassica oleracea HOM05D004484 ORTHO05D005370 1.2e-236 823.5 685 58.1
BcaC07g37180 Brassica carinata HOM05D004484 ORTHO05D005370 2.0e-236 822.8 689 58.1
C08p05620 Brassica napus HOM05D004484 ORTHO05D005370 2.0e-236 822.8 685 58.2
Cfa001721 Carpinus fangiana HOM05D004484 ORTHO05D005370 2.9e-235 818.9 584 68.7
CARHR037700 Cardamine hirsuta HOM05D004484 ORTHO05D005370 5.5e-234 814.7 690 59.1
TPR.G9845 Trifolium pratense HOM05D004484 ORTHO05D005370 2.5e-231 805.8 720 58.5
AUR62013627 Chenopodium quinoa HOM05D004484 ORTHO05D005370 7.4e-231 804.3 705 59.4
AL1G54570 Arabidopsis lyrata HOM05D004484 ORTHO05D005370 6.2e-230 801.2 673 58.8
A08p05330 Brassica napus HOM05D004484 ORTHO05D005370 2.4e-229 799.3 665 57.6
SHI13523 Sapria himalayana HOM05D004484 ORTHO05D005370 2.0e-228 796.2 662 61.9
HPP92_027818 Vanilla planifolia HOM05D004484 ORTHO05D005370 1.9e-218 763.1 690 58.0
Hund27347 Selenicereus undatus HOM05D004484 ORTHO05D005370 2.7e-217 759.2 606 63.7
COL.COLO4_07018 Corchorus olitorius HOM05D004484 ORTHO05D005370 8.2e-214 747.7 554 67.3
unitig_749.g13780 Utricularia gibba HOM05D004484 ORTHO05D005370 8.5e-211 737.6 570 65.3
Zm00001eb064930 Zea mays HOM05D004484 ORTHO05D005370 1.2e-209 733.8 673 56.9
arahy.Tifrunner.gnm1.ann1.5WGS6V Arachis hypogaea HOM05D004484 ORTHO05D005370 1.4e-202 710.3 660 57.7
arahy.Tifrunner.gnm1.ann1.03ZR4A Arachis hypogaea HOM05D004484 ORTHO05D005370 6.1e-201 704.9 703 54.6
COL.COLO4_12548 Corchorus olitorius HOM05D004484 ORTHO05D005370 3.8e-195 685.6 710 51.4
arahy.Tifrunner.gnm1.ann1.5492A7 Arachis hypogaea HOM05D004484 ORTHO05D005370 8.8e-192 674.5 683 55.2
Pp3c22_11100 Physcomitrium patens HOM05D004484 ORTHO05D005370 6.3e-190 668.3 700 49.4
Potri.002G148200 Populus trichocarpa HOM05D004484 ORTHO05D005370 7.7e-188 661.4 490 67.8
Hma1.2p1_0086F.1_g044880 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 3.0e-184 649.4 459 71.2
arahy.Tifrunner.gnm1.ann1.T9R8PC Arachis hypogaea HOM05D004484 ORTHO05D005370 1.7e-182 643.7 699 52.6
Aa31LG10G5650 Aethionema arabicum HOM05D004484 ORTHO05D005370 1.3e-179 634.0 587 55.4
Lj9C569T11 Lonicera japonica HOM05D004484 ORTHO05D005370 1.2e-177 627.5 466 67.2
Thhalv10011351m.g Eutrema salsugineum HOM05D004484 ORTHO05D005370 6.1e-177 625.2 652 50.6
ATR0049G077 Amborella trichopoda HOM05D004484 ORTHO05D005370 1.5e-175 620.5 458 64.8
SMO367G0514 Selaginella moellendorffii HOM05D004484 ORTHO05D005370 2.6e-175 619.8 695 47.5
CDE04G3156 Ceratophyllum demersum HOM05D004484 ORTHO05D005370 2.7e-172 609.8 673 49.2
Mapoly0129s0012 Marchantia polymorpha HOM05D004484 ORTHO05D005370 1.3e-166 590.9 634 47.9
PGR119G1536 Punica granatum HOM05D004484 ORTHO05D005370 8.9e-160 568.2 516 56.2
RcHm_v2.0_Chr1g0350581 Rosa chinensis HOM05D004484 ORTHO05D005370 1.5e-151 540.8 381 68.0
AagrBONN_evm.TU.Sc2ySwM_368.3373 Anthoceros agrestis HOM05D004484 ORTHO05D005370 3.4e-151 539.7 688 42.4
CBR_g30081 Chara braunii HOM05D004484 ORTHO05D005370 3.9e-115 419.9 451 47.0
RcHm_v2.0_Chr1g0350571 Rosa chinensis HOM05D004484 ORTHO05D005370 7.7e-103 379.0 297 64.0
SHI38996 Sapria himalayana HOM05D004484 ORTHO05D005370 3.8e-86 323.6 204 77.0
Hma1.2p1_0701F.1_g205850 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 2.9e-78 297.4 268 61.2
SHI38095 Sapria himalayana HOM05D004484 ORTHO05D005370 7.2e-77 292.7 190 74.2
SHI38094 Sapria himalayana HOM05D004484 ORTHO05D005370 2.6e-58 231.1 211 57.8
Glyma.06G243967 Glycine max HOM05D004484 ORTHO05D005370 6.6e-54 216.5 143 69.9
arahy.Tifrunner.gnm1.ann1.47H85H Arachis hypogaea HOM05D004484 ORTHO05D005370 1.1e-53 215.7 340 40.0
Glyma.01G142851 Glycine max HOM05D004484 ORTHO05D005370 4.1e-48 197.2 164 60.4
MCO15G158 Micromonas commoda HOM05D004484 ORTHO05D005370 7.8e-47 193.0 544 29.0
SGA_v2.0_scaffold65G22170 Striga asiatica HOM05D004484 ORTHO05D005370 4.7e-44 183.7 244 48.0
SEGI_20047 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 6.2e-44 183.3 221 42.5
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 2.2e-41 174.9 267 40.1
CAN.G594.7 Capsicum annuum HOM05D004484 ORTHO05D005370 1.6e-39 168.7 111 73.9
Hma1.2p1_0170F.1_g075250 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 3.0e-38 164.5 202 50.0
SEGI_29754 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 8.6e-38 162.9 116 70.7
SHI38995 Sapria himalayana HOM05D004484 ORTHO05D005370 9.5e-37 159.5 126 65.1
Glyma.17G005802 Glycine max HOM05D004484 ORTHO05D005370 1.4e-35 155.6 192 49.5
CAN.G205.22 Capsicum annuum HOM05D004484 ORTHO05D005370 9.9e-34 149.4 96 75.0
QL08p052505 Quercus lobata HOM05D004484 ORTHO05D005370 2.2e-33 148.3 181 47.0
TPR.G22633 Trifolium pratense HOM05D004484 ORTHO05D005370 2.9e-33 147.9 92 75.0
SGA_v2.0_scaffold10G05342 Striga asiatica HOM05D004484 ORTHO05D005370 1.5e-26 125.6 184 45.7
Os03g0856200 Oryza sativa ssp. japonica HOM05D004484 ORTHO05D005370 2.6e-26 124.8 97 60.8
Eucgr.I00725 Eucalyptus grandis HOM05D004484 ORTHO05D005370 3.4e-26 124.4 82 70.7
SGA_v2.0_scaffold172G39032 Striga asiatica HOM05D004484 ORTHO05D005370 4.4e-26 124.0 168 48.2
SGA_v2.0_scaffold29G12247 Striga asiatica HOM05D004484 ORTHO05D005370 1.7e-25 122.1 230 40.0
Aa31LG10G5660 Aethionema arabicum HOM05D004484 ORTHO05D005370 1.9e-24 118.6 94 57.4
CAN.G388.14 Capsicum annuum HOM05D004484 ORTHO05D005370 4.2e-24 117.5 76 64.5
CAN.G279.6 Capsicum annuum HOM05D004484 ORTHO05D005370 1.2e-23 115.9 72 77.8
Solyc01g091430.2 Solanum lycopersicum HOM05D004484 ORTHO05D005370 2.7e-23 114.8 99 59.6
Solyc01g091440.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 2.7e-15 88.2 133 42.1
PRCOL_00002704 Prasinoderma coloniale HOM05D004484 ORTHO05D005370 2.3e-14 85.1 261 29.1
CAN.G321.48 Capsicum annuum HOM05D001267 ORTHO05D002376 1.9e-13 82.0 62 67.7
Glyma.06G243934 Glycine max HOM05D004484 ORTHO05D005370 4.3e-13 80.9 81 49.4
Glyma.06G244302 Glycine max HOM05D004484 ORTHO05D005370 4.3e-13 80.9 116 40.5
Eucgr.E01421 Eucalyptus grandis HOM05D004484 ORTHO05D005370 9.6e-13 79.7 66 60.6
Eucgr.L02075 Eucalyptus grandis HOM05D004484 ORTHO05D005370 1.6e-12 79.0 66 62.1
TPR.G9848 Trifolium pratense HOM05D000164 ORTHO05D000096 5.3e-11 73.9 55 61.8
arahy.Tifrunner.gnm1.ann1.0F06NC Arachis hypogaea HOM05D004484 ORTHO05D005370 1.3e-09 69.3 47 63.8
Cre10.g423800 Chlamydomonas reinhardtii HOM05D004484 ORTHO05D005370 4.9e-09 67.4 548 21.4
Oeu032522.1 Olea europaea HOM05D004484 ORTHO05D005370 4.2e-08 64.3 71 49.3
Hma1.2p1_1470F.1_g285600 Hydrangea macrophylla HOM05D000467 ORTHO05D011800 2.1e-07 62.0 45 66.7
unitig_749.g13781 Utricularia gibba HOM05D004484 ORTHO05D005370 1.0e-06 59.7 41 68.3


User provided reference genes

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