Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0001501 Rosa chinensis HOM05D003820 ORTHO05D004540 7.9e-132 473.8 238 100.0
FvH4_3g00980 Fragaria vesca HOM05D003820 ORTHO05D004540 1.8e-91 339.7 200 87.0
FAN25G1165 Fragaria x ananassa HOM05D003820 ORTHO05D004540 1.6e-84 316.6 200 83.5
FAN21G2909 Fragaria x ananassa HOM05D003820 ORTHO05D004540 5.2e-75 285.0 200 77.0
MD10G1331700 Malus domestica HOM05D003820 ORTHO05D004540 8.8e-75 284.3 206 75.2
MD05G1357700 Malus domestica HOM05D003820 ORTHO05D004540 5.9e-71 271.6 207 72.0
Prupe.4G010400 Prunus persica HOM05D003820 ORTHO05D004540 6.6e-70 268.1 212 72.2
CANSAT56G3158 Cannabis sativa HOM05D003820 ORTHO05D004540 2.2e-65 253.1 209 67.0
VMungo0647G1639 Vigna mungo HOM05D003820 ORTHO05D004540 4.5e-63 245.4 210 63.3
MELO3C025562.2 Cucumis melo HOM05D003820 ORTHO05D004540 3.8e-62 242.3 180 71.1
Ca_00446_v3 Cicer arietinum L. HOM05D003820 ORTHO05D004540 5.0e-62 241.9 207 63.3
ClCG01G010210 Citrullus lanatus HOM05D003820 ORTHO05D004540 1.1e-61 240.7 191 69.1
CsaV3_1G017170 Cucumis sativus L. HOM05D003820 ORTHO05D004540 1.1e-61 240.7 180 70.0
Phvul.007G152400 Phaseolus vulgaris HOM05D003820 ORTHO05D004540 1.1e-61 240.7 211 62.6
PGR102G0671 Punica granatum HOM05D003820 ORTHO05D004540 1.5e-61 240.4 206 61.2
Lj6g0008289 Lotus japonicus HOM05D003820 ORTHO05D004540 1.9e-61 240.0 203 66.5
CDE07G0952 Ceratophyllum demersum HOM05D003820 ORTHO05D004540 4.3e-61 238.8 201 63.2
Psat7g171280 Pisum sativum HOM05D003820 ORTHO05D004540 4.3e-61 238.8 209 62.7
PGR042G2289 Punica granatum HOM05D003820 ORTHO05D004540 5.6e-61 238.4 207 62.3
Thecc.06G233400 Theobroma cacao HOM05D003820 ORTHO05D004540 5.6e-61 238.4 184 66.3
Medtr4g077490 Medicago truncatula HOM05D003820 ORTHO05D004540 1.6e-60 236.9 210 63.8
FvH4_6g03150 Fragaria vesca HOM05D003820 ORTHO05D004540 2.8e-60 236.1 200 63.0
FAN14G5460 Fragaria x ananassa HOM05D003820 ORTHO05D004540 2.8e-60 236.1 200 63.0
Sed0023864 Sechium edule HOM05D003820 ORTHO05D004540 3.6e-60 235.7 207 60.9
Glyma.10G073300 Glycine max HOM05D003820 ORTHO05D004540 4.7e-60 235.3 210 63.8
PSO675G6471 Papaver somniferum HOM05D003820 ORTHO05D004540 6.1e-60 235.0 184 63.6
Phvul.008G270100 Phaseolus vulgaris HOM05D003820 ORTHO05D004540 6.1e-60 235.0 208 63.0
Lalb_Chr03g0038011 Lupinus albus HOM05D003820 ORTHO05D004540 1.0e-59 234.2 209 63.2
Glyma.13G154200 Glycine max HOM05D003820 ORTHO05D004540 1.8e-59 233.4 210 61.4
COL.COLO4_19462 Corchorus olitorius HOM05D003820 ORTHO05D004540 4.0e-59 232.3 203 65.5
Cpa.g.sc109.41 Carica papaya HOM05D003820 ORTHO05D004540 1.2e-58 230.7 196 64.3
QL05p069714 Quercus lobata HOM05D003820 ORTHO05D004540 3.4e-58 229.2 210 62.9
DCAR_008620 Daucus carota HOM05D003820 ORTHO05D004540 7.5e-58 228.0 207 62.3
Rhsim02G0099100 Rhododendron simsii HOM05D003820 ORTHO05D004540 1.3e-57 227.3 219 58.4
TPR.G29505 Trifolium pratense HOM05D003820 ORTHO05D004540 1.7e-57 226.9 210 62.9
Duzib235G0001 Durio zibethinus HOM05D003820 ORTHO05D004540 2.2e-57 226.5 201 62.7
Lj2g0013565 Lotus japonicus HOM05D003820 ORTHO05D004540 3.7e-57 225.7 204 64.2
CDE04G0225 Ceratophyllum demersum HOM05D003820 ORTHO05D004540 4.9e-57 225.3 202 61.4
Eucgr.H03283 Eucalyptus grandis HOM05D003820 ORTHO05D004540 4.9e-57 225.3 204 58.8
Dinv07403 Davidia involucrata HOM05D003820 ORTHO05D004540 8.3e-57 224.6 190 64.2
Ah.14g087640 Amaranthus hybridus HOM05D003820 ORTHO05D004540 1.9e-56 223.4 214 59.8
Migut.M01395 Erythranthe guttata HOM05D003820 ORTHO05D004540 2.4e-56 223.0 202 62.4
Manes.01G126900 Manihot esculenta HOM05D003820 ORTHO05D004540 7.0e-56 221.5 209 59.3
Sc17g0007740 Simmondsia chinensis HOM05D003820 ORTHO05D004540 2.7e-55 219.5 115 86.1
HPP92_017772 Vanilla planifolia HOM05D003820 ORTHO05D004540 3.5e-55 219.2 212 58.5
vmacro15759 Vaccinium macrocarpon HOM05D003820 ORTHO05D004540 4.6e-55 218.8 113 86.7
Actinidia39270 Actinidia chinensis HOM05D003820 ORTHO05D004540 7.8e-55 218.0 212 56.6
CSS0023179 Camellia sinensis var. sinensis HOM05D003820 ORTHO05D004540 7.8e-55 218.0 205 60.5
CiPaw.10G077900 Carya illinoinensis HOM05D003820 ORTHO05D004540 7.8e-55 218.0 188 62.8
Gorai.010G186600 Gossypium raimondii HOM05D003820 ORTHO05D004540 7.8e-55 218.0 200 63.5
AagrBONN_evm.TU.Sc2ySwM_344.5496 Anthoceros agrestis HOM05D003820 ORTHO05D004540 1.0e-54 217.6 197 59.9
Gohir.A06G153180 Gossypium hirsutum HOM05D003820 ORTHO05D004540 1.0e-54 217.6 200 63.0
TAR626G0254 Trochodendron aralioides HOM05D003820 ORTHO05D004540 1.0e-54 217.6 221 58.4
Haze_06920 Corylus avellana HOM05D003820 ORTHO05D004540 1.7e-54 216.9 112 88.4
Solyc02g068480.3 Solanum lycopersicum HOM05D003820 ORTHO05D004540 1.7e-54 216.9 210 60.0
CAN.G1299.7 Capsicum annuum HOM05D003820 ORTHO05D004540 3.0e-54 216.1 211 59.7
Nitab4.5_0008965g0020 Nicotiana tabacum HOM05D003820 ORTHO05D004540 3.0e-54 216.1 210 61.0
ATR0712G044 Amborella trichopoda HOM05D003820 ORTHO05D004540 3.9e-54 215.7 120 80.8
Atru.chr1.2452 Acer truncatum HOM05D003820 ORTHO05D004540 5.0e-54 215.3 111 89.2
Sopen02g017620 Solanum pennellii HOM05D003820 ORTHO05D004540 6.6e-54 214.9 210 61.4
Ciclev10004667m.g Citrus clementina HOM05D003820 ORTHO05D004540 8.6e-54 214.5 207 61.8
Duzib192G0171 Durio zibethinus HOM05D003820 ORTHO05D004540 8.6e-54 214.5 111 87.4
Lsat_1_v5_gn_7_13661 Lactuca sativa HOM05D003820 ORTHO05D004540 1.5e-53 213.8 111 87.4
THA.LOC104812993 Tarenaya hassleriana HOM05D003820 ORTHO05D004540 1.5e-53 213.8 103 93.2
Potri.006G010100 Populus trichocarpa HOM05D003820 ORTHO05D004540 3.3e-53 212.6 202 61.9
Potri.016G014000 Populus trichocarpa HOM05D003820 ORTHO05D004540 4.3e-53 212.2 193 62.7
Aqoxy3G02484 Aquilegia oxysepala HOM05D003820 ORTHO05D004540 5.6e-53 211.8 191 63.4
Gohir.D06G159900 Gossypium hirsutum HOM05D003820 ORTHO05D004540 7.3e-53 211.5 200 62.0
ECA233G4304 Erigeron canadensis HOM05D003820 ORTHO05D004540 9.5e-53 211.1 112 85.7
Gohir.A06G205300 Gossypium hirsutum HOM05D003820 ORTHO05D004540 1.6e-52 210.3 103 90.3
Gorai.010G250000 Gossypium raimondii HOM05D003820 ORTHO05D004540 1.6e-52 210.3 103 90.3
HanXRQChr05g0129131 Helianthus annuus HOM05D003820 ORTHO05D004540 1.6e-52 210.3 111 86.5
Peaxi162Scf00199g00923 Petunia axillaris HOM05D003820 ORTHO05D004540 2.1e-52 209.9 200 58.5
Nitab4.5_0000443g0170 Nicotiana tabacum HOM05D003820 ORTHO05D004540 2.8e-52 209.5 211 59.2
AUR62021859 Chenopodium quinoa HOM05D003820 ORTHO05D004540 3.6e-52 209.1 109 83.5
PGSC0003DMG400009435 Solanum tuberosum HOM05D003820 ORTHO05D004540 3.6e-52 209.1 203 59.6
Lj2A261T37 Lonicera japonica HOM05D003820 ORTHO05D004540 4.7e-52 208.8 100 93.0
Pp3c2_2850 Physcomitrium patens HOM05D003820 ORTHO05D004540 4.7e-52 208.8 102 90.2
Gohir.D06G216200 Gossypium hirsutum HOM05D003820 ORTHO05D004540 6.2e-52 208.4 103 89.3
A03p53480 Brassica napus HOM05D003820 ORTHO05D004540 8.0e-52 208.0 149 69.1
C07p51810 Brassica napus HOM05D003820 ORTHO05D004540 8.0e-52 208.0 149 67.8
Thhalv10024723m.g Eutrema salsugineum HOM05D003820 ORTHO05D004540 8.0e-52 208.0 121 77.7
EL10Ac8g20189 Beta vulgaris HOM05D003820 ORTHO05D004540 1.1e-51 207.6 107 86.9
BcaNung01693 Brassica carinata HOM05D003820 ORTHO05D004540 1.1e-51 207.6 155 67.1
CARHR229260 Cardamine hirsuta HOM05D003820 ORTHO05D004540 1.1e-51 207.6 211 57.3
Sp7g20480 Schrenkiella parvula HOM05D003820 ORTHO05D004540 1.1e-51 207.6 137 74.5
MSTRG.16027 Avicennia marina HOM05D003820 ORTHO05D004540 1.4e-51 207.2 203 57.6
BraA01t01316Z Brassica rapa HOM05D003820 ORTHO05D004540 1.4e-51 207.2 148 68.9
BraA03t14414Z Brassica rapa HOM05D003820 ORTHO05D004540 1.4e-51 207.2 148 68.2
Aa31LG6G4450 Aethionema arabicum HOM05D003820 ORTHO05D004540 1.8e-51 206.8 107 86.0
COL.COLO4_14642 Corchorus olitorius HOM05D003820 ORTHO05D004540 1.8e-51 206.8 104 88.5
Os09g0407900 Oryza sativa ssp. japonica HOM05D003820 ORTHO05D004540 1.8e-51 206.8 104 87.5
SHI24460 Sapria himalayana HOM05D003820 ORTHO05D004540 1.8e-51 206.8 209 53.6
SMO118G0007 Selaginella moellendorffii HOM05D003820 ORTHO05D004540 1.8e-51 206.8 102 90.2
SEGI_26834 Sequoiadendron giganteum HOM05D003820 ORTHO05D004540 2.3e-51 206.5 113 83.2
BolC7t45683H Brassica oleracea HOM05D003820 ORTHO05D004540 3.1e-51 206.1 149 67.1
unitig_62.g23505 Utricularia gibba HOM05D003820 ORTHO05D004540 3.1e-51 206.1 104 89.4
A01p13710 Brassica napus HOM05D003820 ORTHO05D004540 4.0e-51 205.7 201 57.2
C01p16620 Brassica napus HOM05D003820 ORTHO05D004540 4.0e-51 205.7 189 58.7
BolC1t01609H Brassica oleracea HOM05D003820 ORTHO05D004540 4.0e-51 205.7 189 58.7
Nn1g07382 Nelumbo nucifera HOM05D003820 ORTHO05D004540 4.0e-51 205.7 159 67.9
Hund23407 Selenicereus undatus HOM05D003820 ORTHO05D004540 4.0e-51 205.7 218 56.9
AL7G31260 Arabidopsis lyrata HOM05D003820 ORTHO05D004540 5.2e-51 205.3 107 86.0
BcaNung02500 Brassica carinata HOM05D003820 ORTHO05D004540 5.2e-51 205.3 149 67.1
Carub.0007s1895 Capsella rubella HOM05D003820 ORTHO05D004540 6.8e-51 204.9 107 85.0
Atru.chr1.2449 Acer truncatum HOM05D003820 ORTHO05D004540 8.9e-51 204.5 112 82.1
Sabra16G0001800 Salix brachista HOM05D003820 ORTHO05D004540 1.2e-50 204.1 204 59.3
Sabra16G0016300 Salix brachista HOM05D003820 ORTHO05D004540 1.2e-50 204.1 204 59.3
AT4G22285 Arabidopsis thaliana HOM05D003820 ORTHO05D004540 1.5e-50 203.8 103 88.3
Zm00001eb225610 Zea mays HOM05D003820 ORTHO05D004540 3.4e-50 202.6 167 64.7
Mapoly0061s0070 Marchantia polymorpha HOM05D003820 ORTHO05D004540 7.5e-50 201.4 104 86.5
AT4G22350 Arabidopsis thaliana HOM05D003820 ORTHO05D004540 9.8e-50 201.1 188 60.1
Medtr4g077320 Medicago truncatula HOM05D003820 ORTHO05D004540 2.9e-49 199.5 103 85.4
Sabra06G0008300 Salix brachista HOM05D003820 ORTHO05D004540 3.7e-49 199.1 226 55.3
Lj2C282T7 Lonicera japonica HOM05D003820 ORTHO05D004540 1.1e-48 197.6 136 72.1
Manes.02G083800 Manihot esculenta HOM05D003820 ORTHO05D004540 1.1e-48 197.6 211 56.4
BraA06t24699Z Brassica rapa HOM05D003820 ORTHO05D004540 1.9e-48 196.8 123 75.6
A06p15880 Brassica napus HOM05D003820 ORTHO05D004540 1.2e-47 194.1 156 64.7
CBR_g53671 Chara braunii HOM05D003820 ORTHO05D004540 2.1e-47 193.4 98 86.7
Lj6P617T46 Lonicera japonica HOM05D003820 ORTHO05D004540 3.9e-46 189.1 107 78.5
HanXRQChr03g0086431 Helianthus annuus HOM05D003820 ORTHO05D004540 1.1e-45 187.6 103 82.5
HanXRQChr03g0086471 Helianthus annuus HOM05D003820 ORTHO05D004540 1.1e-45 187.6 114 78.1
HanXRQChr03g0086481 Helianthus annuus HOM05D003820 ORTHO05D004540 2.5e-45 186.4 114 77.2
Nitab4.5_0001735g0140 Nicotiana tabacum HOM05D003820 ORTHO05D004540 1.4e-43 180.6 124 65.3
PSO541G5704 Papaver somniferum HOM05D003820 ORTHO05D004540 2.3e-43 179.9 85 94.1
Haze_06925 Corylus avellana HOM05D003820 ORTHO05D004540 4.0e-43 179.1 103 80.6
TPR.G23689 Trifolium pratense HOM05D003820 ORTHO05D004540 6.8e-43 178.3 95 87.4
QL10p037768 Quercus lobata HOM05D003820 ORTHO05D004540 9.9e-42 174.5 83 94.0
Peaxi162Scf00177g00115 Petunia axillaris HOM05D003820 ORTHO05D004540 1.3e-41 174.1 151 58.9
Hma1.2p1_2009F.1_g310970 Hydrangea macrophylla HOM05D003820 ORTHO05D004540 3.7e-41 172.6 91 84.6
AUR62012795 Chenopodium quinoa HOM05D003820 ORTHO05D004540 2.4e-40 169.9 82 90.2
FAN09G3292 Fragaria x ananassa HOM05D003820 ORTHO05D004540 2.7e-39 166.4 173 56.1
Peaxi162Scf00610g00120 Petunia axillaris HOM05D003820 ORTHO05D004540 5.1e-38 162.2 85 83.5
MCO11G519 Micromonas commoda HOM05D003820 ORTHO05D004540 2.5e-37 159.8 104 68.3
SGA_v2.0_scaffold4G01876 Striga asiatica HOM05D003820 ORTHO05D004540 4.3e-37 159.1 187 54.0
COL.COLO4_04224 Corchorus olitorius HOM05D003820 ORTHO05D004540 7.3e-37 158.3 109 68.8
Duzib264G0116 Durio zibethinus HOM05D003820 ORTHO05D004540 6.2e-36 155.2 199 50.8
Aqoxy5G01269 Aquilegia oxysepala HOM05D003820 ORTHO05D004540 8.1e-36 154.8 103 68.0
Haze_26297 Corylus avellana HOM05D003820 ORTHO05D004540 6.8e-35 151.8 96 67.7
AUR62017961 Chenopodium quinoa HOM05D003820 ORTHO05D004540 2.6e-34 149.8 105 65.7
AUR62014154 Chenopodium quinoa HOM05D003820 ORTHO05D004540 6.4e-33 145.2 94 69.1
Cfa027151 Carpinus fangiana HOM05D003820 ORTHO05D004540 1.9e-32 143.7 90 67.8
Hma1.2p1_0657F.1_g197170 Hydrangea macrophylla HOM05D003820 ORTHO05D004540 6.0e-31 138.7 100 67.0
PRCOL_00000942 Prasinoderma coloniale HOM05D003820 ORTHO05D004540 1.6e-28 130.6 101 55.4
Cc09_g00870 Coffea canephora HOM05D003820 ORTHO05D004540 3.6e-28 129.4 112 60.7
HanXRQChr03g0086521 Helianthus annuus HOM05D003820 ORTHO05D004540 7.6e-26 121.7 60 88.3
TPR.G33399 Trifolium pratense HOM05D003820 ORTHO05D004540 7.6e-26 121.7 97 60.8
RcHm_v2.0_Chr4g0397451 Rosa chinensis HOM05D003820 ORTHO05D004540 1.2e-23 114.4 96 58.3
FAN02G3088 Fragaria x ananassa HOM05D003820 ORTHO05D004540 3.5e-23 112.8 53 94.3
CiPaw.09G102300 Carya illinoinensis HOM05D003820 ORTHO05D004540 5.6e-21 105.5 104 55.8
arahy.Tifrunner.gnm1.ann1.7FS7F8 Arachis hypogaea HOM05D003820 ORTHO05D004540 1.3e-20 104.4 148 51.4
Oeu015944.1 Olea europaea HOM05D003820 ORTHO05D004540 1.5e-18 97.4 144 47.2
COL.COLO4_11384 Corchorus olitorius HOM05D002880 ORTHO05D003450 3.9e-14 82.8 96 50.0


User provided reference genes

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