Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0326771 Rosa chinensis HOM05D003203 ORTHO05D003526 8.4e-102 373.6 180 100.0
RcHm_v2.0_Chr5g0060751 Rosa chinensis HOM05D003203 ORTHO05D003526 1.2e-68 263.5 133 96.2
FAN16G3448 Fragaria x ananassa HOM05D003203 ORTHO05D003526 1.8e-64 249.6 133 90.2
FAN11G3892 Fragaria x ananassa HOM05D003203 ORTHO05D003526 2.9e-62 242.3 133 89.5
FvH4_4g02320 Fragaria vesca HOM05D003203 ORTHO05D003526 6.5e-62 241.1 134 88.8
FvH4_3g33360 Fragaria vesca HOM05D003203 ORTHO05D003526 1.4e-61 240.0 133 88.7
FAN12G0401 Fragaria x ananassa HOM05D003203 ORTHO05D003526 1.2e-60 236.9 134 87.3
RcHm_v2.0_Chr4g0389641 Rosa chinensis HOM05D003203 ORTHO05D003526 4.6e-60 235.0 134 85.8
FAN22G0069 Fragaria x ananassa HOM05D003203 ORTHO05D003526 3.9e-59 231.9 134 85.8
CANSAT54G1869 Cannabis sativa HOM05D003203 ORTHO05D003526 2.8e-57 225.7 134 81.3
COL.COLO4_25248 Corchorus olitorius HOM05D003203 ORTHO05D003526 6.9e-56 221.1 133 79.7
Thecc.09G260300 Theobroma cacao HOM05D003203 ORTHO05D003526 6.9e-56 221.1 133 80.5
MD11G1129800 Malus domestica HOM05D003203 ORTHO05D003526 1.5e-55 219.9 134 79.9
QL01p037166 Quercus lobata HOM05D003203 ORTHO05D003526 1.5e-55 219.9 135 80.0
Sabra16G0090500 Salix brachista HOM05D003203 ORTHO05D003526 2.6e-55 219.2 134 78.4
Potri.016G083100 Populus trichocarpa HOM05D003203 ORTHO05D003526 4.5e-55 218.4 134 78.4
Atru.chr3.3693 Acer truncatum HOM05D003203 ORTHO05D003526 7.7e-55 217.6 134 78.4
Prupe.6G094700 Prunus persica HOM05D003203 ORTHO05D003526 1.3e-54 216.9 146 75.3
Ciclev10027702m.g Citrus clementina HOM05D003203 ORTHO05D003526 1.7e-54 216.5 134 76.9
Dinv32789 Davidia involucrata HOM05D003203 ORTHO05D003526 2.9e-54 215.7 145 73.1
Gohir.A05G074700 Gossypium hirsutum HOM05D003203 ORTHO05D003526 3.8e-54 215.3 133 78.2
Duzib168G0563 Durio zibethinus HOM05D003203 ORTHO05D003526 1.4e-53 213.4 133 78.9
TWI31G0332 Tripterygium wilfordii HOM05D003203 ORTHO05D003526 1.4e-53 213.4 134 75.4
Eucgr.B02467 Eucalyptus grandis HOM05D003203 ORTHO05D003526 1.9e-53 213.0 145 72.4
TAR636G0568 Trochodendron aralioides HOM05D003203 ORTHO05D003526 2.5e-53 212.6 134 79.1
Gohir.D05G077500 Gossypium hirsutum HOM05D003203 ORTHO05D003526 5.5e-53 211.5 133 77.4
GSVIVG01025133001 Vitis vinifera HOM05D003203 ORTHO05D003526 5.5e-53 211.5 134 75.4
Gorai.009G078900 Gossypium raimondii HOM05D003203 ORTHO05D003526 1.2e-52 210.3 133 77.4
Rhsim01G0220300 Rhododendron simsii HOM05D003203 ORTHO05D003526 1.2e-52 210.3 134 76.9
TAR633G1300 Trochodendron aralioides HOM05D003203 ORTHO05D003526 1.2e-52 210.3 133 74.4
Nn2g10680 Nelumbo nucifera HOM05D003203 ORTHO05D003526 1.6e-52 209.9 145 70.3
Nn2g13009 Nelumbo nucifera HOM05D003203 ORTHO05D003526 2.1e-52 209.5 145 69.0
Aqoxy3G02869 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 3.6e-52 208.8 134 73.9
ATR1159G092 Amborella trichopoda HOM05D003203 ORTHO05D003526 4.7e-52 208.4 134 72.4
Haze_23916 Corylus avellana HOM05D003203 ORTHO05D003526 1.4e-51 206.8 134 73.9
Lj3g0012673 Lotus japonicus HOM05D003203 ORTHO05D003526 1.4e-51 206.8 134 71.6
Lj3g0020808 Lotus japonicus HOM05D003203 ORTHO05D003526 1.4e-51 206.8 134 71.6
Psat7g223280 Pisum sativum HOM05D003203 ORTHO05D003526 1.4e-51 206.8 134 70.9
Oeu005910.3 Olea europaea HOM05D003203 ORTHO05D003526 2.3e-51 206.1 134 72.4
CSS0047004 Camellia sinensis var. sinensis HOM05D003203 ORTHO05D003526 3.0e-51 205.7 134 74.6
Lj1A185G36 Lonicera japonica HOM05D003203 ORTHO05D003526 3.0e-51 205.7 134 73.1
TPR.G14912 Trifolium pratense HOM05D003203 ORTHO05D003526 3.0e-51 205.7 134 71.6
Sc15g0001570 Simmondsia chinensis HOM05D003203 ORTHO05D003526 8.8e-51 204.1 134 73.1
CiPaw.13G106900 Carya illinoinensis HOM05D003203 ORTHO05D003526 1.1e-50 203.8 145 68.3
Ca_19241_v3 Cicer arietinum L. HOM05D003203 ORTHO05D003526 1.1e-50 203.8 134 68.7
Lj1C185T11 Lonicera japonica HOM05D003203 ORTHO05D003526 1.1e-50 203.8 134 70.9
Aqoxy4G03208 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 1.5e-50 203.4 134 73.9
MELO3C005030.2 Cucumis melo HOM05D003203 ORTHO05D003526 2.6e-50 202.6 134 73.9
CsaV3_1G013020 Cucumis sativus L. HOM05D003203 ORTHO05D003526 2.6e-50 202.6 134 73.9
Manes.11G141000 Manihot esculenta HOM05D003203 ORTHO05D003526 3.3e-50 202.2 134 73.1
Medtr4g060795 Medicago truncatula HOM05D003203 ORTHO05D003526 3.3e-50 202.2 134 70.1
Cfa011365 Carpinus fangiana HOM05D003203 ORTHO05D003526 5.7e-50 201.4 134 72.4
Glyma.11G152960 Glycine max HOM05D003203 ORTHO05D003526 5.7e-50 201.4 134 70.1
ClCG03G002340 Citrullus lanatus HOM05D003203 ORTHO05D003526 7.4e-50 201.1 134 73.9
SHI27628 Sapria himalayana HOM05D003203 ORTHO05D003526 1.3e-49 200.3 134 73.1
PGR102G2647 Punica granatum HOM05D003203 ORTHO05D003526 2.8e-49 199.1 145 69.7
Sed0015984 Sechium edule HOM05D003203 ORTHO05D003526 2.8e-49 199.1 134 73.9
arahy.Tifrunner.gnm1.ann1.GJ7521 Arachis hypogaea HOM05D003203 ORTHO05D003526 4.8e-49 198.4 143 67.8
arahy.Tifrunner.gnm1.ann1.DWB64P Arachis hypogaea HOM05D003203 ORTHO05D003526 6.3e-49 198.0 143 67.8
Peaxi162Scf00389g00932 Petunia axillaris HOM05D003203 ORTHO05D003526 1.4e-48 196.8 134 72.4
HPP92_010183 Vanilla planifolia HOM05D003203 ORTHO05D003526 1.4e-48 196.8 133 68.4
Lalb_Chr03g0027111 Lupinus albus HOM05D003203 ORTHO05D003526 1.8e-48 196.4 134 70.1
Cpa.g.sc139.65 Carica papaya HOM05D003203 ORTHO05D003526 3.1e-48 195.7 134 71.6
SGA_v2.0_scaffold97G29171 Striga asiatica HOM05D003203 ORTHO05D003526 4.1e-48 195.3 135 72.6
Phvul.011G072500 Phaseolus vulgaris HOM05D003203 ORTHO05D003526 7.0e-48 194.5 134 67.9
MSTRG.21144 Avicennia marina HOM05D003203 ORTHO05D003526 1.2e-47 193.7 134 70.1
Os07g0191700 Oryza sativa ssp. japonica HOM05D003203 ORTHO05D003526 1.6e-47 193.4 135 66.7
Solyc11g072430.3 Solanum lycopersicum HOM05D003203 ORTHO05D003526 2.0e-47 193.0 134 70.9
Sopen11g030070 Solanum pennellii HOM05D003203 ORTHO05D003526 2.0e-47 193.0 134 70.9
CAN.G352.40 Capsicum annuum HOM05D003203 ORTHO05D003526 2.6e-47 192.6 134 70.9
Zm00001eb302520 Zea mays HOM05D003203 ORTHO05D003526 2.6e-47 192.6 134 67.9
PSO339G5999 Papaver somniferum HOM05D003203 ORTHO05D003526 3.5e-47 192.2 134 71.6
PSO063G5461 Papaver somniferum HOM05D003203 ORTHO05D003526 4.5e-47 191.8 134 70.9
AUR62006513 Chenopodium quinoa HOM05D003203 ORTHO05D003526 7.7e-47 191.0 134 68.7
THA.LOC104815752 Tarenaya hassleriana HOM05D003203 ORTHO05D003526 7.7e-47 191.0 134 67.2
AUR62025015 Chenopodium quinoa HOM05D003203 ORTHO05D003526 1.3e-46 190.3 134 70.1
Cc01_g11550 Coffea canephora HOM05D003203 ORTHO05D003526 1.3e-46 190.3 145 65.5
VMungo1127G1096 Vigna mungo HOM05D003203 ORTHO05D003526 1.7e-46 189.9 134 65.7
vmacro14071 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 2.9e-46 189.1 165 60.0
EL10Ac9g22449 Beta vulgaris HOM05D003203 ORTHO05D003526 6.5e-46 188.0 134 69.4
Lj2C1036G7 Lonicera japonica HOM05D003203 ORTHO05D003526 6.5e-46 188.0 176 57.4
PSO765G0203 Papaver somniferum HOM05D003203 ORTHO05D003526 1.1e-45 187.2 134 70.1
BcaC07g42504 Brassica carinata HOM05D003203 ORTHO05D003526 2.5e-45 186.0 134 69.4
DCAR_006042 Daucus carota HOM05D003203 ORTHO05D003526 4.2e-45 185.3 134 67.2
Migut.D02182 Erythranthe guttata HOM05D003203 ORTHO05D003526 7.2e-45 184.5 134 69.4
Thhalv10006605m.g Eutrema salsugineum HOM05D003203 ORTHO05D003526 1.2e-44 183.7 134 67.9
BcaC07g41968 Brassica carinata HOM05D003203 ORTHO05D003526 1.6e-44 183.3 134 67.2
C08p50260 Brassica napus HOM05D003203 ORTHO05D003526 1.6e-44 183.3 134 67.2
BolC8t52555H Brassica oleracea HOM05D003203 ORTHO05D003526 1.6e-44 183.3 134 67.2
A09p66110 Brassica napus HOM05D003203 ORTHO05D003526 2.1e-44 183.0 134 67.2
Aa31sc36G120 Aethionema arabicum HOM05D003203 ORTHO05D003526 2.7e-44 182.6 134 67.9
CDE07G0291 Ceratophyllum demersum HOM05D003203 ORTHO05D003526 2.7e-44 182.6 134 63.4
BcaB02g06702 Brassica carinata HOM05D003203 ORTHO05D003526 3.6e-44 182.2 134 67.2
SalBow3G4618 Salvia bowleyana HOM05D003203 ORTHO05D003526 4.7e-44 181.8 149 63.1
BraA09t41949Z Brassica rapa HOM05D003203 ORTHO05D003526 8.0e-44 181.0 134 67.2
HanXRQChr13g0401461 Helianthus annuus HOM05D003203 ORTHO05D003526 8.0e-44 181.0 133 67.7
Migut.N02091 Erythranthe guttata HOM05D003203 ORTHO05D003526 1.4e-43 180.3 134 69.4
SalBow6G0781 Salvia bowleyana HOM05D003203 ORTHO05D003526 1.8e-43 179.9 134 67.9
Lsat_1_v5_gn_6_26241 Lactuca sativa HOM05D003203 ORTHO05D003526 2.3e-43 179.5 134 67.9
AL6G53580 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 6.7e-43 177.9 133 63.9
Carub.0011s0009 Capsella rubella HOM05D003203 ORTHO05D003526 6.7e-43 177.9 133 61.7
AT1G07910 Arabidopsis thaliana HOM05D003203 ORTHO05D003526 1.2e-42 177.2 133 63.9
Carub.0001s0725 Capsella rubella HOM05D003203 ORTHO05D003526 1.5e-42 176.8 133 62.4
C05p05960 Brassica napus HOM05D003203 ORTHO05D003526 1.3e-41 173.7 134 64.2
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 1.3e-41 173.7 134 64.2
A06p05020 Brassica napus HOM05D003203 ORTHO05D003526 1.7e-41 173.3 134 63.4
BraA06t23708Z Brassica rapa HOM05D003203 ORTHO05D003526 1.7e-41 173.3 134 63.4
ECA233G2891 Erigeron canadensis HOM05D003203 ORTHO05D003526 3.7e-41 172.2 137 63.5
BcaC05g24708 Brassica carinata HOM05D003203 ORTHO05D003526 4.8e-41 171.8 134 63.4
FAN17G1981 Fragaria x ananassa HOM05D003203 ORTHO05D003526 2.2e-38 162.9 133 66.2
SEGI_33151 Sequoiadendron giganteum HOM05D003203 ORTHO05D003526 2.9e-38 162.5 134 57.5
unitig_736.g22420 Utricularia gibba HOM05D003203 ORTHO05D003526 7.2e-37 157.9 135 63.0
SpUn0400_0010 Schrenkiella parvula HOM05D003203 ORTHO05D003526 4.1e-32 142.1 134 56.0
AL1G18200 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 1.2e-31 140.6 133 54.9
DCAR_024905 Daucus carota HOM05D003203 ORTHO05D003526 7.7e-31 137.9 112 62.5
Hund28195 Selenicereus undatus HOM05D003203 ORTHO05D003526 4.2e-29 132.1 86 72.1
Hund28197 Selenicereus undatus HOM05D003203 ORTHO05D003526 4.2e-29 132.1 86 72.1
QL11p006401 Quercus lobata HOM05D003203 ORTHO05D003526 8.0e-28 127.9 79 78.5
QL11p006907 Quercus lobata HOM05D003203 ORTHO05D003526 8.0e-28 127.9 79 78.5
QL11p006896 Quercus lobata HOM05D003203 ORTHO05D003526 2.3e-27 126.3 78 78.2
Nitab4.5_0001802g0140 Nicotiana tabacum HOM05D003203 ORTHO05D003526 4.0e-27 125.6 134 50.7
Nitab4.5_0002129g0110 Nicotiana tabacum HOM05D003203 ORTHO05D003526 5.2e-27 125.2 134 50.7
vmacro14464 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 3.4e-26 122.5 78 75.6
AL7G46970 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 4.1e-24 115.5 91 60.4
AagrBONN_evm.TU.Sc2ySwM_245.2 Anthoceros agrestis HOM05D003203 ORTHO05D003526 1.6e-23 113.6 131 46.6
AagrBONN_evm.TU.Sc2ySwM_362.2654 Anthoceros agrestis HOM05D003203 ORTHO05D003526 1.6e-23 113.6 131 46.6
Pp3c27_2850 Physcomitrium patens HOM05D003203 ORTHO05D003526 1.0e-22 110.9 137 46.0
AagrBONN_evm.TU.Sc2ySwM_117.4029 Anthoceros agrestis HOM05D003203 ORTHO05D003526 3.8e-22 109.0 131 45.0
AagrBONN_evm.TU.Sc2ySwM_117.4032 Anthoceros agrestis HOM05D003203 ORTHO05D003526 3.8e-22 109.0 131 45.0
AagrBONN_evm.TU.Sc2ySwM_117.4033 Anthoceros agrestis HOM05D003203 ORTHO05D003526 3.8e-22 109.0 131 45.0
AagrBONN_evm.TU.Sc2ySwM_117.4034 Anthoceros agrestis HOM05D003203 ORTHO05D003526 3.8e-22 109.0 131 45.0
AagrBONN_evm.TU.Sc2ySwM_244.3 Anthoceros agrestis HOM05D003203 ORTHO05D003526 3.8e-22 109.0 131 45.0
AagrBONN_evm.TU.Sc2ySwM_246.1 Anthoceros agrestis HOM05D003203 ORTHO05D003526 3.8e-22 109.0 131 45.0
AagrBONN_evm.TU.Sc2ySwM_341.1 Anthoceros agrestis HOM05D003203 ORTHO05D003526 3.8e-22 109.0 131 45.0
AagrBONN_evm.TU.Sc2ySwM_341.2 Anthoceros agrestis HOM05D003203 ORTHO05D003526 3.8e-22 109.0 131 45.0
SMO223G0015 Selaginella moellendorffii HOM05D003203 ORTHO05D003526 1.1e-21 107.5 129 46.5
Mapoly0005s0012 Marchantia polymorpha HOM05D003203 ORTHO05D003526 1.9e-21 106.7 131 42.7
MD03G1112400 Malus domestica HOM05D003203 ORTHO05D003526 6.1e-20 101.7 57 84.2
Lsat_1_v5_gn_4_85140 Lactuca sativa HOM05D003203 ORTHO05D003526 3.0e-19 99.4 134 43.3
Nitab4.5_0000848g0100 Nicotiana tabacum HOM05D003203 ORTHO05D003526 1.3e-17 94.0 57 73.7
vmacro14465 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 1.4e-16 90.5 57 75.4
TPR.G38674 Trifolium pratense HOM05D003203 ORTHO05D003526 2.4e-16 89.7 54 66.7
CBR_g39406 Chara braunii HOM05D003203 ORTHO05D003526 4.1e-16 89.0 131 40.5
CARHR007720 Cardamine hirsuta HOM05D003203 ORTHO05D003526 1.2e-15 87.4 69 62.3
TPR.G38645 Trifolium pratense HOM05D003203 ORTHO05D003526 6.2e-12 75.1 54 64.8
Lsat_1_v5_gn_6_107780 Lactuca sativa HOM05D004503 ORTHO05D003526 1.1e-11 74.3 82 50.0
Lsat_1_v5_gn_2_120 Lactuca sativa HOM05D003203 ORTHO05D003526 4.0e-11 72.4 96 44.8
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 1.7e-09 67.0 56 58.9


User provided reference genes

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