Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p048514 Quercus lobata HOM05D004358 ORTHO05D004960 4.1e-110 401.4 198 100.0
Cfa015153 Carpinus fangiana HOM05D004358 ORTHO05D004960 5.4e-94 347.8 187 88.8
Haze_01520 Corylus avellana HOM05D004358 ORTHO05D004960 1.6e-93 346.3 187 90.4
Dinv22724 Davidia involucrata HOM05D004358 ORTHO05D004960 3.5e-93 345.1 187 87.2
MD04G1007400 Malus domestica HOM05D004358 ORTHO05D004960 4.6e-93 344.7 187 89.3
Ciclev10020813m.g Citrus clementina HOM05D004358 ORTHO05D004960 1.0e-92 343.6 184 89.1
CiPaw.02G055200 Carya illinoinensis HOM05D004358 ORTHO05D004960 1.3e-92 343.2 187 87.7
GSVIVG01010748001 Vitis vinifera HOM05D004358 ORTHO05D004960 3.0e-92 342.0 188 87.8
RcHm_v2.0_Chr4g0407021 Rosa chinensis HOM05D004358 ORTHO05D004960 7.3e-91 337.4 187 87.2
Atru.chr3.1531 Acer truncatum HOM05D004358 ORTHO05D004960 9.6e-91 337.0 182 88.5
Potri.007G127600 Populus trichocarpa HOM05D004358 ORTHO05D004960 9.6e-91 337.0 187 84.5
TAR362G1164 Trochodendron aralioides HOM05D004358 ORTHO05D004960 1.2e-90 336.7 186 86.6
Glyma.11G128600 Glycine max HOM05D004358 ORTHO05D004960 3.6e-90 335.1 190 85.3
Prupe.1G191600 Prunus persica HOM05D004358 ORTHO05D004960 3.6e-90 335.1 187 86.1
Lj3g0009399 Lotus japonicus HOM05D004358 ORTHO05D004960 1.1e-89 333.6 188 86.2
CANSAT78G2120 Cannabis sativa HOM05D004358 ORTHO05D004960 2.4e-89 332.4 188 86.2
Actinidia39855 Actinidia chinensis HOM05D004358 ORTHO05D004960 4.0e-89 331.6 186 84.9
TAR636G1513 Trochodendron aralioides HOM05D004358 ORTHO05D004960 5.2e-89 331.3 186 85.5
Nitab4.5_0005570g0020 Nicotiana tabacum HOM05D004358 ORTHO05D004960 1.5e-88 329.7 180 86.7
TWI59G0142 Tripterygium wilfordii HOM05D004358 ORTHO05D004960 2.0e-88 329.3 187 84.0
FAN07G2248 Fragaria x ananassa HOM05D004358 ORTHO05D004960 9.9e-88 327.0 192 82.3
FAN12G1706 Fragaria x ananassa HOM05D004358 ORTHO05D004960 9.9e-88 327.0 187 84.5
CAN.G65.181 Capsicum annuum HOM05D004358 ORTHO05D004960 2.2e-87 325.9 191 81.7
COL.COLO4_02723 Corchorus olitorius HOM05D004358 ORTHO05D004960 2.2e-87 325.9 187 82.9
Duzib151G0384 Durio zibethinus HOM05D004358 ORTHO05D004960 2.2e-87 325.9 187 83.4
FAN12G4165 Fragaria x ananassa HOM05D004358 ORTHO05D004960 2.2e-87 325.9 187 84.0
Lalb_Chr01g0003211 Lupinus albus HOM05D004358 ORTHO05D004960 2.9e-87 325.5 187 82.9
MSTRG.6615 Avicennia marina HOM05D004358 ORTHO05D004960 3.8e-87 325.1 187 82.4
VMungo1127G0908 Vigna mungo HOM05D004358 ORTHO05D004960 3.8e-87 325.1 188 83.0
Rhsim02G0076600 Rhododendron simsii HOM05D004358 ORTHO05D004960 6.4e-87 324.3 217 74.2
FvH4_4g10690 Fragaria vesca HOM05D004358 ORTHO05D004960 8.4e-87 323.9 187 83.4
Phvul.011G055100 Phaseolus vulgaris HOM05D004358 ORTHO05D004960 8.4e-87 323.9 188 83.0
Sabra07G0103600 Salix brachista HOM05D004358 ORTHO05D004960 1.9e-86 322.8 189 82.0
Manes.04G041200 Manihot esculenta HOM05D004358 ORTHO05D004960 2.4e-86 322.4 179 83.8
Atru.chr3.1534 Acer truncatum HOM05D004358 ORTHO05D004960 4.2e-86 321.6 189 83.1
arahy.Tifrunner.gnm1.ann1.CJKM5C Arachis hypogaea HOM05D004358 ORTHO05D004960 4.2e-86 321.6 188 81.4
SalBow7G0323 Salvia bowleyana HOM05D004358 ORTHO05D004960 4.2e-86 321.6 191 80.6
Sopen06g029780 Solanum pennellii HOM05D004358 ORTHO05D004960 7.1e-86 320.9 180 84.4
Solyc06g073400.3 Solanum lycopersicum HOM05D004358 ORTHO05D004960 1.2e-85 320.1 180 84.4
CSS0013619 Camellia sinensis var. sinensis HOM05D004358 ORTHO05D004960 4.6e-85 318.2 178 84.8
Peaxi162Scf00375g00513 Petunia axillaris HOM05D004358 ORTHO05D004960 4.6e-85 318.2 177 85.3
Ciclev10020816m.g Citrus clementina HOM05D004358 ORTHO05D004960 1.3e-84 316.6 187 81.8
Psat7g213960 Pisum sativum HOM05D004358 ORTHO05D004960 1.3e-84 316.6 189 81.0
SGA_v2.0_scaffold181G39728 Striga asiatica HOM05D004358 ORTHO05D004960 1.3e-84 316.6 199 77.4
TPR.G34203 Trifolium pratense HOM05D004358 ORTHO05D004960 1.7e-84 316.2 189 81.5
unitig_8.g4603 Utricularia gibba HOM05D004358 ORTHO05D004960 2.3e-84 315.8 185 80.5
Glyma.13G343700 Glycine max HOM05D004358 ORTHO05D004960 5.1e-84 314.7 186 80.1
PSO732G0278 Papaver somniferum HOM05D004358 ORTHO05D004960 1.1e-83 313.5 180 81.7
Cc00_g17220 Coffea canephora HOM05D004358 ORTHO05D004960 1.9e-83 312.8 183 80.9
Eucgr.H00376 Eucalyptus grandis HOM05D004358 ORTHO05D004960 2.5e-83 312.4 176 83.0
Sc13g0005360 Simmondsia chinensis HOM05D004358 ORTHO05D004960 3.3e-83 312.0 185 80.0
ClCG07G015600 Citrullus lanatus HOM05D004358 ORTHO05D004960 4.3e-83 311.6 188 79.8
DCAR_028143 Daucus carota HOM05D004358 ORTHO05D004960 4.3e-83 311.6 198 75.3
Gorai.011G146700 Gossypium raimondii HOM05D004358 ORTHO05D004960 5.6e-83 311.2 190 82.6
arahy.Tifrunner.gnm1.ann1.VZ0ARL Arachis hypogaea HOM05D004358 ORTHO05D004960 7.3e-83 310.8 187 77.5
Ca_20780_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 7.3e-83 310.8 185 80.5
Nn1g09578 Nelumbo nucifera HOM05D004358 ORTHO05D004960 7.3e-83 310.8 186 79.0
PSO675G5046 Papaver somniferum HOM05D004358 ORTHO05D004960 7.3e-83 310.8 180 81.1
Carub.0001s0527 Capsella rubella HOM05D004358 ORTHO05D004960 1.3e-82 310.1 188 77.7
MELO3C017721.2 Cucumis melo HOM05D004358 ORTHO05D004960 1.6e-82 309.7 190 78.4
Medtr4g067060 Medicago truncatula HOM05D004358 ORTHO05D004960 2.1e-82 309.3 188 79.8
CARHR005460 Cardamine hirsuta HOM05D004358 ORTHO05D004960 1.1e-81 307.0 188 77.7
AT2G31450 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 1.4e-81 306.6 185 77.8
THA.LOC104827388 Tarenaya hassleriana HOM05D004358 ORTHO05D004960 1.8e-81 306.2 188 78.2
AL1G15860 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 2.4e-81 305.8 186 78.0
CsaV3_4G003300 Cucumis sativus L. HOM05D004358 ORTHO05D004960 3.1e-81 305.4 187 78.1
Thhalv10016815m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 3.1e-81 305.4 186 76.9
Aa31LG5G5430 Aethionema arabicum HOM05D004358 ORTHO05D004960 4.0e-81 305.1 185 77.8
PSO732G0822 Papaver somniferum HOM05D004358 ORTHO05D004960 4.0e-81 305.1 180 79.4
Sed0019525 Sechium edule HOM05D004358 ORTHO05D004960 4.0e-81 305.1 187 78.1
AL4G26720 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 6.9e-81 304.3 185 76.8
Hund03152 Selenicereus undatus HOM05D004358 ORTHO05D004960 6.9e-81 304.3 186 80.1
AT1G05900 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 1.2e-80 303.5 186 76.9
CARHR125100 Cardamine hirsuta HOM05D004358 ORTHO05D004960 1.5e-80 303.1 179 79.3
Lj3g0017360 Lotus japonicus HOM05D004358 ORTHO05D004960 1.5e-80 303.1 179 78.2
BcaC01g05950 Brassica carinata HOM05D004358 ORTHO05D004960 4.4e-80 301.6 186 76.9
C03p20720 Brassica napus HOM05D004358 ORTHO05D004960 4.4e-80 301.6 186 76.9
BolC3t14451H Brassica oleracea HOM05D004358 ORTHO05D004960 4.4e-80 301.6 186 76.9
arahy.Tifrunner.gnm1.ann1.98UW30 Arachis hypogaea HOM05D004358 ORTHO05D004960 5.8e-80 301.2 180 77.8
AUR62002292 Chenopodium quinoa HOM05D004358 ORTHO05D004960 5.8e-80 301.2 183 75.4
Carub.0004s1278 Capsella rubella HOM05D004358 ORTHO05D004960 7.6e-80 300.8 181 77.3
Sp4g13930 Schrenkiella parvula HOM05D004358 ORTHO05D004960 7.6e-80 300.8 186 76.9
Ca_01263_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 1.3e-79 300.1 186 76.3
Phvul.005G152500 Phaseolus vulgaris HOM05D004358 ORTHO05D004960 2.2e-79 299.3 186 76.3
AUR62015399 Chenopodium quinoa HOM05D004358 ORTHO05D004960 2.9e-79 298.9 182 75.8
Thhalv10007955m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 2.9e-79 298.9 187 76.5
BcaC07g42102 Brassica carinata HOM05D004358 ORTHO05D004960 3.8e-79 298.5 186 75.8
C08p51540 Brassica napus HOM05D004358 ORTHO05D004960 3.8e-79 298.5 186 75.8
BolC8t52682H Brassica oleracea HOM05D004358 ORTHO05D004960 3.8e-79 298.5 186 75.8
BcaB01g04044 Brassica carinata HOM05D004358 ORTHO05D004960 4.9e-79 298.1 186 75.8
Medtr2g098660 Medicago truncatula HOM05D004358 ORTHO05D004960 1.4e-78 296.6 186 75.8
A03p17630 Brassica napus HOM05D004358 ORTHO05D004960 2.4e-78 295.8 187 76.5
BraA03t11028Z Brassica rapa HOM05D004358 ORTHO05D004960 2.4e-78 295.8 187 76.5
PGR142G0453 Punica granatum HOM05D004358 ORTHO05D004960 4.2e-78 295.0 196 73.0
vmacro15647 Vaccinium macrocarpon HOM05D004358 ORTHO05D004960 4.2e-78 295.0 226 66.8
Ah.13g072910 Amaranthus hybridus HOM05D004358 ORTHO05D004960 5.4e-78 294.7 184 72.8
A09p67250 Brassica napus HOM05D004358 ORTHO05D004960 5.4e-78 294.7 186 74.2
BraA09t42058Z Brassica rapa HOM05D004358 ORTHO05D005739 5.4e-78 294.7 186 74.2
Peaxi162Scf00058g01717 Petunia axillaris HOM05D004358 ORTHO05D004960 5.4e-78 294.7 186 73.7
EL10Ac3g05922 Beta vulgaris HOM05D004358 ORTHO05D004960 1.6e-77 293.1 192 72.9
ATR0686G198 Amborella trichopoda HOM05D004358 ORTHO05D004960 6.0e-77 291.2 179 74.9
Hund03151 Selenicereus undatus HOM05D004358 ORTHO05D004960 1.0e-76 290.4 187 73.8
ECA236G3148 Erigeron canadensis HOM05D004358 ORTHO05D004960 3.0e-76 288.9 181 71.8
Solyc09g083003.1 Solanum lycopersicum HOM05D004358 ORTHO05D004960 8.7e-76 287.3 188 71.3
PGSC0003DMG401006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 8.7e-76 287.3 186 72.6
CAN.G749.19 Capsicum annuum HOM05D004358 ORTHO05D004960 9.6e-75 283.9 176 74.4
Sopen09g031880 Solanum pennellii HOM05D004358 ORTHO05D004960 2.1e-74 282.7 186 69.4
Nitab4.5_0001787g0060 Nicotiana tabacum HOM05D004358 ORTHO05D004960 2.8e-74 282.3 185 71.4
Lsat_1_v5_gn_8_80540 Lactuca sativa HOM05D004358 ORTHO05D004960 6.2e-74 281.2 187 71.7
HanXRQChr06g0172341 Helianthus annuus HOM05D004358 ORTHO05D004960 2.4e-73 279.3 186 74.2
Aqoxy7G00192 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 1.4e-70 270.0 188 71.8
Nitab4.5_0000941g0030 Nicotiana tabacum HOM05D004358 ORTHO05D004960 1.6e-69 266.5 185 68.6
Thecc.04G185400 Theobroma cacao HOM05D004358 ORTHO05D004960 1.6e-69 266.5 187 72.2
SHI24906 Sapria himalayana HOM05D004358 ORTHO05D004960 2.7e-69 265.8 202 65.8
Gohir.D10G133000 Gossypium hirsutum HOM05D004358 ORTHO05D004960 4.6e-69 265.0 187 73.3
Zm00001eb406830 Zea mays HOM05D004358 ORTHO05D004960 1.1e-67 260.4 180 66.1
arahy.Tifrunner.gnm1.ann1.Z962T9 Arachis hypogaea HOM05D004358 ORTHO05D004960 4.3e-67 258.5 140 85.0
ECA236G1172 Erigeron canadensis HOM05D004358 ORTHO05D004960 2.1e-66 256.1 146 80.1
SalBow7G1435 Salvia bowleyana HOM05D004358 ORTHO05D004960 4.8e-66 255.0 131 86.3
SMO347G0587 Selaginella moellendorffii HOM05D004358 ORTHO05D004960 4.5e-64 248.4 179 64.8
Aqoxy7G00191 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 1.3e-63 246.9 186 63.4
Mapoly0058s0068 Marchantia polymorpha HOM05D004358 ORTHO05D004960 7.1e-62 241.1 181 63.0
CBR_g29622 Chara braunii HOM05D004358 ORTHO05D004960 3.9e-60 235.3 188 61.7
Nitab4.5_0003132g0140 Nicotiana tabacum HOM05D004358 ORTHO05D004960 6.7e-60 234.6 180 68.3
Psat1g007160 Pisum sativum HOM05D004358 ORTHO05D004960 5.7e-59 231.5 141 75.2
Mapoly0058s0067 Marchantia polymorpha HOM05D004358 ORTHO05D004960 2.0e-56 223.0 182 59.9
Migut.M00111 Erythranthe guttata HOM05D004358 ORTHO05D004960 1.6e-50 203.4 112 85.7
PGSC0003DMG401026906 Solanum tuberosum HOM05D004358 ORTHO05D004960 6.3e-50 201.4 107 86.0
Ca_18838_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 6.9e-49 198.0 114 78.1
Sp1g04740 Schrenkiella parvula HOM05D004358 ORTHO05D004960 5.9e-48 194.9 172 56.4
Glyma.12G053100 Glycine max HOM05D004358 ORTHO05D004960 8.5e-47 191.0 111 82.0
CAN.G80.26 Capsicum annuum HOM05D004358 ORTHO05D004960 9.7e-43 177.6 174 54.6
Haze_27447 Corylus avellana HOM05D004358 ORTHO05D004960 2.4e-41 172.9 168 50.6
Cfa026201 Carpinus fangiana HOM05D004358 ORTHO05D004960 6.3e-34 148.3 155 47.1
DCAR_028139 Daucus carota HOM05D004358 ORTHO05D004960 1.1e-33 147.5 75 86.7
Pp3c17_17810 Physcomitrium patens HOM05D004358 ORTHO05D004960 5.3e-33 145.2 184 44.0
AagrBONN_evm.TU.Sc2ySwM_368.679 Anthoceros agrestis HOM05D004358 ORTHO05D004960 2.0e-32 143.3 191 43.5
Gohir.A10G133700 Gossypium hirsutum HOM05D004358 ORTHO05D004960 3.5e-32 142.5 78 92.3
Mapoly0058s0064 Marchantia polymorpha HOM05D004358 ORTHO05D004960 2.3e-28 129.8 104 57.7
Cpa.g.sc41.25 Carica papaya HOM05D004358 ORTHO05D004960 3.3e-27 125.9 75 81.3
Cpa.g.sc41.31 Carica papaya HOM05D004358 ORTHO05D004960 2.4e-25 119.8 74 78.4
BcaC07g42101 Brassica carinata HOM05D004358 ORTHO05D004960 3.1e-25 119.4 76 73.7
Rhsim02G0076400 Rhododendron simsii HOM05D004358 ORTHO05D004960 7.2e-22 108.2 92 57.6
PGSC0003DMG402006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 1.9e-14 83.6 67 58.2
Ca_29315_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 9.4e-14 81.3 142 32.4
Cre17.g732050 Chlamydomonas reinhardtii HOM05D004358 ORTHO05D004960 1.6e-13 80.5 158 30.4
Lj3C203G5 Lonicera japonica HOM05D009066 ORTHO05D004960 3.4e-11 72.8 37 86.5
Pp3c18_200 Physcomitrium patens HOM05D006570 ORTHO05D008193 4.9e-10 68.9 177 31.6
PRCOL_00001550 Prasinoderma coloniale HOM05D004358 ORTHO05D004960 4.9e-10 68.9 132 30.3
Cre02.g082000 Chlamydomonas reinhardtii HOM05D006570 ORTHO05D008193 1.4e-09 67.4 183 27.3
Mapoly0043s0062 Marchantia polymorpha HOM05D006570 ORTHO05D008193 1.3e-07 60.8 152 28.9
Ciclev10015195m.g Citrus clementina HOM05D006570 ORTHO05D008193 2.9e-07 59.7 152 28.3
Gohir.D07G093500 Gossypium hirsutum HOM05D006570 ORTHO05D008193 6.6e-07 58.5 130 31.5
Gorai.001G100200 Gossypium raimondii HOM05D006570 ORTHO05D008193 6.6e-07 58.5 130 31.5
Lalb_Chr10g0100201 Lupinus albus HOM05D006570 ORTHO05D008193 6.6e-07 58.5 132 32.6
Thecc.01G203700 Theobroma cacao HOM05D006570 ORTHO05D008193 6.6e-07 58.5 141 29.1
arahy.Tifrunner.gnm1.ann1.N5JW36 Arachis hypogaea HOM05D006570 ORTHO05D008193 1.1e-06 57.8 147 32.7
ECA236G3480 Erigeron canadensis HOM05D006570 ORTHO05D008193 1.1e-06 57.8 141 30.5
Potri.014G198000 Populus trichocarpa HOM05D006570 ORTHO05D008193 1.1e-06 57.8 130 32.3
HanXRQChr16g0508391 Helianthus annuus HOM05D006570 ORTHO05D008193 1.5e-06 57.4 142 29.6
MCO12G048 Micromonas commoda HOM05D006570 ORTHO05D008193 1.5e-06 57.4 176 28.4
Phvul.010G109900 Phaseolus vulgaris HOM05D006570 ORTHO05D008193 1.5e-06 57.4 139 28.1
arahy.Tifrunner.gnm1.ann1.L2UBUE Arachis hypogaea HOM05D006570 ORTHO05D008193 1.9e-06 57.0 147 32.0
CsaV3_6G007600 Cucumis sativus L. HOM05D006570 ORTHO05D008193 2.5e-06 56.6 154 26.0
Gohir.A07G088500 Gossypium hirsutum HOM05D006570 ORTHO05D008193 2.5e-06 56.6 109 33.0
Oeu020442.2 Olea europaea HOM05D006570 ORTHO05D008193 4.3e-06 55.8 163 26.4
VMungo0331G0798 Vigna mungo HOM05D006570 ORTHO05D008193 4.3e-06 55.8 139 27.3
Actinidia23139 Actinidia chinensis HOM05D006570 ORTHO05D008193 5.6e-06 55.5 133 30.1
MBI10_g46813_MAGBIO Magnolia biondii HOM05D006570 ORTHO05D008193 5.6e-06 55.5 181 24.3
Lsat_1_v5_gn_8_98640 Lactuca sativa HOM05D006570 ORTHO05D008193 7.3e-06 55.1 141 27.0
CiPaw.07G077200 Carya illinoinensis HOM05D006570 ORTHO05D008193 9.5e-06 54.7 130 30.8
PSO170G2695 Papaver somniferum HOM05D006570 ORTHO05D008193 9.5e-06 54.7 152 25.7


User provided reference genes

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