Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p052472 Quercus lobata HOM05D004484 ORTHO05D005370 0.0e+00 1376.7 689 100.0
CiPaw.01G262000 Carya illinoinensis HOM05D004484 ORTHO05D005370 0.0e+00 1176.0 687 84.6
Haze_16815 Corylus avellana HOM05D004484 ORTHO05D005370 0.0e+00 1161.7 745 78.9
Prupe.2G145600 Prunus persica HOM05D004484 ORTHO05D005370 0.0e+00 1105.5 687 79.8
Dinv32377 Davidia involucrata HOM05D004484 ORTHO05D005370 0.0e+00 1095.1 689 78.1
MD07G1121000 Malus domestica HOM05D004484 ORTHO05D005370 1.9e-311 1072.0 687 77.7
GSVIVG01027610001 Vitis vinifera HOM05D004484 ORTHO05D005370 7.1e-311 1070.1 671 77.3
Hma1.2p1_0086F.1_g044870 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.1e-308 1062.8 685 77.2
Lalb_Chr13g0291731 Lupinus albus HOM05D004484 ORTHO05D005370 5.7e-308 1060.4 687 76.3
Sed0020955 Sechium edule HOM05D004484 ORTHO05D005370 1.7e-307 1058.9 687 75.8
Potri.014G069700 Populus trichocarpa HOM05D004484 ORTHO05D005370 6.3e-307 1057.0 687 76.0
Atru.chr5.309 Acer truncatum HOM05D004484 ORTHO05D005370 1.4e-306 1055.8 684 75.4
TWI23G0227 Tripterygium wilfordii HOM05D004484 ORTHO05D005370 1.5e-303 1045.8 687 75.4
Ca_19886_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 4.2e-303 1044.3 687 74.8
Lj3g0013484 Lotus japonicus HOM05D004484 ORTHO05D005370 1.5e-300 1035.8 685 75.2
FvH4_7g11900 Fragaria vesca HOM05D004484 ORTHO05D005370 5.7e-300 1033.9 687 73.8
CANSAT56G4533 Cannabis sativa HOM05D004484 ORTHO05D005370 4.8e-299 1030.8 688 74.4
FAN01G0628 Fragaria x ananassa HOM05D004484 ORTHO05D005370 8.2e-299 1030.0 687 73.4
ClCG05G002220 Citrullus lanatus HOM05D004484 ORTHO05D005370 1.1e-298 1029.6 687 74.4
Medtr4g023560 Medicago truncatula HOM05D004484 ORTHO05D005370 1.1e-298 1029.6 687 73.9
Nn1g01233 Nelumbo nucifera HOM05D004484 ORTHO05D005370 1.8e-298 1028.9 684 73.8
Ca_27059_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 2.4e-298 1028.5 687 73.9
Oeu055487.1 Olea europaea HOM05D004484 ORTHO05D005370 7.0e-298 1026.9 687 73.7
Nitab4.5_0000457g0330 Nicotiana tabacum HOM05D004484 ORTHO05D005370 1.2e-297 1026.2 689 73.1
Eucgr.E01418 Eucalyptus grandis HOM05D004484 ORTHO05D005370 3.5e-297 1024.6 688 73.3
FAN10G1483 Fragaria x ananassa HOM05D004484 ORTHO05D005370 4.5e-297 1024.2 687 73.5
FAN10G2369 Fragaria x ananassa HOM05D004484 ORTHO05D005370 4.5e-297 1024.2 687 73.4
FAN06G1787 Fragaria x ananassa HOM05D004484 ORTHO05D005370 7.7e-297 1023.5 687 73.5
Lj7A528T57 Lonicera japonica HOM05D004484 ORTHO05D005370 1.7e-296 1022.3 698 74.1
FAN06G3319 Fragaria x ananassa HOM05D004484 ORTHO05D005370 6.5e-296 1020.4 687 73.1
CANSAT56G1200 Cannabis sativa HOM05D004484 ORTHO05D005370 8.5e-296 1020.0 688 73.7
Cc02_g36700 Coffea canephora HOM05D004484 ORTHO05D005370 1.1e-295 1019.6 687 74.4
CsaV3_3G009680 Cucumis sativus L. HOM05D004484 ORTHO05D005370 1.2e-294 1016.1 688 73.0
Thecc.01G376200 Theobroma cacao HOM05D004484 ORTHO05D005370 1.6e-294 1015.8 688 72.5
Psat7g233440 Pisum sativum HOM05D004484 ORTHO05D005370 6.8e-293 1010.4 687 72.6
PSO478G5008 Papaver somniferum HOM05D004484 ORTHO05D005370 2.0e-292 1008.8 689 72.4
Peaxi162Scf00021g01723 Petunia axillaris HOM05D004484 ORTHO05D005370 4.4e-292 1007.7 687 71.9
Manes.01G265900 Manihot esculenta HOM05D004484 ORTHO05D005370 2.8e-291 1005.0 687 72.5
MSTRG.20748 Avicennia marina HOM05D004484 ORTHO05D005370 3.7e-291 1004.6 687 72.5
Ciclev10019016m.g Citrus clementina HOM05D004484 ORTHO05D005370 1.1e-290 1003.0 688 73.1
Aqoxy5G00403 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 2.4e-290 1001.9 687 72.3
HanXRQChr16g0520161 Helianthus annuus HOM05D004484 ORTHO05D005370 2.4e-290 1001.9 689 71.4
CSS0036976 Camellia sinensis var. sinensis HOM05D004484 ORTHO05D005370 3.1e-290 1001.5 693 73.3
Glyma.05G125700 Glycine max HOM05D004484 ORTHO05D005370 5.4e-290 1000.7 688 73.3
TAR629G2468 Trochodendron aralioides HOM05D004484 ORTHO05D005370 5.4e-290 1000.7 670 73.4
Cfa001721 Carpinus fangiana HOM05D004484 ORTHO05D005370 1.2e-289 999.6 583 84.6
ECA234G1700 Erigeron canadensis HOM05D004484 ORTHO05D005370 1.3e-288 996.1 686 71.6
Lalb_Chr12g0208261 Lupinus albus HOM05D004484 ORTHO05D005370 1.3e-288 996.1 687 71.0
PGSC0003DMG400012761 Solanum tuberosum HOM05D004484 ORTHO05D005370 2.9e-288 995.0 687 70.7
CAN.G388.13 Capsicum annuum HOM05D004484 ORTHO05D005370 3.8e-288 994.6 683 71.3
DCAR_015907 Daucus carota HOM05D004484 ORTHO05D005370 3.8e-288 994.6 689 72.0
Sc02g0002590 Simmondsia chinensis HOM05D004484 ORTHO05D005370 2.5e-287 991.9 672 72.0
Phvul.002G205800 Phaseolus vulgaris HOM05D004484 ORTHO05D005370 3.2e-287 991.5 685 72.3
Cpa.g.sc18.115 Carica papaya HOM05D004484 ORTHO05D005370 4.2e-287 991.1 687 70.7
arahy.Tifrunner.gnm1.ann1.V1M046 Arachis hypogaea HOM05D004484 ORTHO05D005370 2.1e-286 988.8 687 72.5
Nitab4.5_0005372g0070 Nicotiana tabacum HOM05D004484 ORTHO05D005370 1.0e-285 986.5 699 70.5
arahy.Tifrunner.gnm1.ann1.6K85L9 Arachis hypogaea HOM05D004484 ORTHO05D005370 2.3e-285 985.3 687 72.5
arahy.Tifrunner.gnm1.ann1.HW1IVJ Arachis hypogaea HOM05D004484 ORTHO05D005370 2.3e-285 985.3 687 72.5
PGR042G0667 Punica granatum HOM05D004484 ORTHO05D005370 6.8e-285 983.8 690 70.6
arahy.Tifrunner.gnm1.ann1.Q9SWB6 Arachis hypogaea HOM05D004484 ORTHO05D005370 8.8e-285 983.4 687 72.1
MELO3C006188.2 Cucumis melo HOM05D004484 ORTHO05D005370 8.8e-285 983.4 653 73.7
Migut.B01635 Erythranthe guttata HOM05D004484 ORTHO05D005370 1.5e-284 982.6 688 71.5
MBI12_g10758_MAGBIO Magnolia biondii HOM05D004484 ORTHO05D005370 4.4e-284 981.1 717 69.5
Sabra14G0049400 Salix brachista HOM05D004484 ORTHO05D005370 2.2e-283 978.8 701 69.9
SGA_v2.0_scaffold153G37012 Striga asiatica HOM05D004484 ORTHO05D005370 3.7e-283 978.0 689 70.2
Solyc01g091350.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 1.1e-282 976.5 687 69.6
vmacro13399 Vaccinium macrocarpon HOM05D004484 ORTHO05D005370 4.1e-282 974.5 690 71.7
Sopen01g037090 Solanum pennellii HOM05D004484 ORTHO05D005370 4.5e-281 971.1 687 69.0
VMungo0251G1206 Vigna mungo HOM05D004484 ORTHO05D005370 5.0e-280 967.6 683 70.0
Gorai.007G091100 Gossypium raimondii HOM05D004484 ORTHO05D005370 2.8e-278 961.8 688 69.3
EL10Ac1g00900 Beta vulgaris HOM05D004484 ORTHO05D005370 1.8e-277 959.1 708 66.7
Gohir.D11G085300 Gossypium hirsutum HOM05D004484 ORTHO05D005370 2.3e-277 958.7 688 69.3
Lsat_1_v5_gn_4_43240 Lactuca sativa HOM05D004484 ORTHO05D005370 6.8e-277 957.2 685 69.3
Gohir.A11G080700 Gossypium hirsutum HOM05D004484 ORTHO05D005370 2.2e-275 952.2 688 68.8
AUR62004221 Chenopodium quinoa HOM05D004484 ORTHO05D005370 4.1e-274 948.0 719 67.3
FAN03G1897 Fragaria x ananassa HOM05D004484 ORTHO05D005370 5.6e-271 937.6 689 68.5
Aqoxy3G02138 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 1.7e-267 926.0 687 67.1
TPR.G9845 Trifolium pratense HOM05D004484 ORTHO05D005370 3.7e-267 924.9 719 66.2
GSVIVG01027609001 Vitis vinifera HOM05D004484 ORTHO05D005370 5.2e-261 904.4 656 68.8
Ah.13g073490 Amaranthus hybridus HOM05D004484 ORTHO05D005370 1.2e-260 903.3 713 63.7
BcaB04g17469 Brassica carinata HOM05D004484 ORTHO05D005370 2.8e-254 882.1 688 62.4
AT1G48050 Arabidopsis thaliana HOM05D004484 ORTHO05D005370 1.4e-250 869.8 686 62.1
Sp1g35020 Schrenkiella parvula HOM05D004484 ORTHO05D005370 1.9e-250 869.4 677 61.9
THA.LOC104817247 Tarenaya hassleriana HOM05D004484 ORTHO05D005370 1.9e-250 869.4 689 62.8
Carub.0001s3716 Capsella rubella HOM05D004484 ORTHO05D005370 1.6e-249 866.3 687 61.7
BraSC267t45947Z Brassica rapa HOM05D004484 ORTHO05D005370 7.8e-249 864.0 683 61.6
BcaC07g37180 Brassica carinata HOM05D004484 ORTHO05D005370 1.3e-248 863.2 689 62.1
C08p05620 Brassica napus HOM05D004484 ORTHO05D005370 2.3e-248 862.4 683 62.1
BolC8t47375H Brassica oleracea HOM05D004484 ORTHO05D005370 2.3e-248 862.4 683 62.1
AL1G54570 Arabidopsis lyrata HOM05D004484 ORTHO05D005370 1.8e-245 852.8 670 62.1
AUR62013627 Chenopodium quinoa HOM05D004484 ORTHO05D005370 2.6e-244 849.0 703 62.7
CARHR037700 Cardamine hirsuta HOM05D004484 ORTHO05D005370 3.8e-243 845.1 686 60.6
SHI13523 Sapria himalayana HOM05D004484 ORTHO05D005370 6.4e-243 844.3 662 64.0
A08p05330 Brassica napus HOM05D004484 ORTHO05D005370 8.4e-243 844.0 667 62.2
Hund27347 Selenicereus undatus HOM05D004484 ORTHO05D005370 1.7e-232 809.7 604 67.1
COL.COLO4_07018 Corchorus olitorius HOM05D004484 ORTHO05D005370 2.5e-218 762.7 554 68.2
arahy.Tifrunner.gnm1.ann1.03ZR4A Arachis hypogaea HOM05D004484 ORTHO05D005370 3.2e-218 762.3 704 58.2
arahy.Tifrunner.gnm1.ann1.5WGS6V Arachis hypogaea HOM05D004484 ORTHO05D005370 7.9e-217 757.7 661 61.0
HPP92_027818 Vanilla planifolia HOM05D004484 ORTHO05D005370 8.7e-216 754.2 685 56.2
Zm00001eb064930 Zea mays HOM05D004484 ORTHO05D005370 1.3e-214 750.4 671 57.2
COL.COLO4_12548 Corchorus olitorius HOM05D004484 ORTHO05D005370 4.5e-212 741.9 710 55.4
Potri.002G148200 Populus trichocarpa HOM05D004484 ORTHO05D005370 1.0e-208 730.7 490 73.7
arahy.Tifrunner.gnm1.ann1.5492A7 Arachis hypogaea HOM05D004484 ORTHO05D005370 1.6e-206 723.4 673 58.4
Hma1.2p1_0086F.1_g044880 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 6.5e-203 711.4 458 77.1
arahy.Tifrunner.gnm1.ann1.T9R8PC Arachis hypogaea HOM05D004484 ORTHO05D005370 1.1e-199 700.7 688 56.4
unitig_749.g13780 Utricularia gibba HOM05D004484 ORTHO05D005370 1.1e-197 694.1 570 61.8
Thhalv10011351m.g Eutrema salsugineum HOM05D004484 ORTHO05D005370 5.7e-191 671.8 649 54.4
Lj9C569T11 Lonicera japonica HOM05D004484 ORTHO05D005370 4.5e-188 662.1 466 71.0
CDE04G3156 Ceratophyllum demersum HOM05D004484 ORTHO05D005370 1.6e-185 653.7 674 51.5
Aa31LG10G5650 Aethionema arabicum HOM05D004484 ORTHO05D005370 2.6e-183 646.4 583 57.6
Pp3c22_11100 Physcomitrium patens HOM05D004484 ORTHO05D005370 3.1e-181 639.4 691 48.3
ATR0049G077 Amborella trichopoda HOM05D004484 ORTHO05D005370 2.7e-177 626.3 458 66.8
SMO367G0514 Selaginella moellendorffii HOM05D004484 ORTHO05D005370 2.2e-174 616.7 696 47.4
RcHm_v2.0_Chr1g0350581 Rosa chinensis HOM05D004484 ORTHO05D005370 2.2e-166 590.1 381 75.6
PGR119G1536 Punica granatum HOM05D004484 ORTHO05D005370 1.8e-165 587.0 516 58.1
Mapoly0129s0012 Marchantia polymorpha HOM05D004484 ORTHO05D005370 4.1e-165 585.9 633 47.1
AagrBONN_evm.TU.Sc2ySwM_368.3373 Anthoceros agrestis HOM05D004484 ORTHO05D005370 1.9e-146 523.9 688 41.0
RcHm_v2.0_Chr1g0350571 Rosa chinensis HOM05D004484 ORTHO05D005370 1.9e-122 444.1 294 75.2
CBR_g30081 Chara braunii HOM05D004484 ORTHO05D005370 1.7e-110 404.4 482 44.2
SHI38996 Sapria himalayana HOM05D004484 ORTHO05D005370 4.5e-87 326.6 204 75.0
Hma1.2p1_0701F.1_g205850 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 5.7e-82 309.7 326 55.2
SHI38095 Sapria himalayana HOM05D004484 ORTHO05D005370 1.1e-77 295.4 190 75.3
QL08p052505 Quercus lobata HOM05D004484 ORTHO05D005370 1.2e-66 258.8 177 76.8
arahy.Tifrunner.gnm1.ann1.47H85H Arachis hypogaea HOM05D004484 ORTHO05D005370 5.9e-63 246.5 340 43.2
SHI38094 Sapria himalayana HOM05D004484 ORTHO05D005370 5.5e-61 240.0 211 58.3
Glyma.01G142851 Glycine max HOM05D004484 ORTHO05D005370 3.1e-56 224.2 164 68.3
Glyma.06G243967 Glycine max HOM05D004484 ORTHO05D005370 2.5e-53 214.5 144 69.4
SEGI_20047 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 6.8e-51 206.5 222 48.6
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 1.0e-46 192.6 255 43.1
Hma1.2p1_0170F.1_g075250 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 6.8e-43 179.9 202 51.0
Glyma.17G005802 Glycine max HOM05D004484 ORTHO05D005370 2.2e-41 174.9 192 53.6
MCO15G158 Micromonas commoda HOM05D004484 ORTHO05D005370 6.4e-41 173.3 521 28.8
CAN.G594.7 Capsicum annuum HOM05D004484 ORTHO05D005370 5.0e-38 163.7 105 75.2
SEGI_29754 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 5.0e-38 163.7 116 69.8
SHI38995 Sapria himalayana HOM05D004484 ORTHO05D005370 8.0e-36 156.4 126 63.5
TPR.G22633 Trifolium pratense HOM05D004484 ORTHO05D005370 1.2e-34 152.5 92 77.2
CAN.G205.22 Capsicum annuum HOM05D004484 ORTHO05D005370 1.3e-33 149.1 96 74.0
Os03g0856200 Oryza sativa ssp. japonica HOM05D004484 ORTHO05D005370 5.0e-30 137.1 97 67.0
SGA_v2.0_scaffold65G22170 Striga asiatica HOM05D004484 ORTHO05D005370 5.0e-30 137.1 201 39.3
Eucgr.I00725 Eucalyptus grandis HOM05D004484 ORTHO05D005370 7.3e-29 133.3 82 76.8
Aa31LG10G5660 Aethionema arabicum HOM05D004484 ORTHO05D005370 7.5e-26 123.2 94 60.6
Solyc01g091430.2 Solanum lycopersicum HOM05D004484 ORTHO05D005370 1.1e-24 119.4 95 63.2
CAN.G279.6 Capsicum annuum HOM05D004484 ORTHO05D005370 7.8e-23 113.2 72 76.4
CAN.G388.14 Capsicum annuum HOM05D004484 ORTHO05D005370 7.8e-23 113.2 73 69.9
Glyma.06G243934 Glycine max HOM05D004484 ORTHO05D005370 5.2e-19 100.5 81 59.3
Glyma.06G244302 Glycine max HOM05D004484 ORTHO05D005370 1.5e-18 99.0 81 58.0
Eucgr.E01421 Eucalyptus grandis HOM05D004484 ORTHO05D005370 2.0e-18 98.6 64 71.9
SGA_v2.0_scaffold10G05342 Striga asiatica HOM05D004484 ORTHO05D005370 9.9e-18 96.3 168 36.3
SGA_v2.0_scaffold172G39032 Striga asiatica HOM05D004484 ORTHO05D005370 3.8e-17 94.4 168 36.3
Eucgr.L02075 Eucalyptus grandis HOM05D004484 ORTHO05D005370 4.9e-17 94.0 64 70.3
Solyc01g091440.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 1.9e-16 92.0 133 43.6
PRCOL_00002704 Prasinoderma coloniale HOM05D004484 ORTHO05D005370 2.4e-16 91.7 264 30.7
TPR.G9848 Trifolium pratense HOM05D000164 ORTHO05D000096 9.2e-16 89.7 55 74.5
SGA_v2.0_scaffold29G12247 Striga asiatica HOM05D004484 ORTHO05D005370 1.0e-14 86.3 187 33.2
CAN.G321.48 Capsicum annuum HOM05D001267 ORTHO05D002376 6.2e-12 77.0 62 61.3
arahy.Tifrunner.gnm1.ann1.0F06NC Arachis hypogaea HOM05D004484 ORTHO05D005370 9.0e-11 73.2 48 66.7
Cre10.g423800 Chlamydomonas reinhardtii HOM05D004484 ORTHO05D005370 4.4e-10 70.9 543 21.4
Hma1.2p1_1470F.1_g285600 Hydrangea macrophylla HOM05D000467 ORTHO05D011800 7.6e-10 70.1 53 69.8
Oeu032522.1 Olea europaea HOM05D004484 ORTHO05D005370 1.9e-08 65.5 63 55.6


User provided reference genes

Program Settings