Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G116000 Prunus persica HOM05D006129 ORTHO05D007446 0.0e+00 1525.0 764 100.0
MD10G1089000 Malus domestica HOM05D006129 ORTHO05D007446 0.0e+00 1242.3 799 79.0
QL11p038411 Quercus lobata HOM05D006129 ORTHO05D007446 0.0e+00 1147.5 788 72.1
RcHm_v2.0_Chr6g0259211 Rosa chinensis HOM05D006129 ORTHO05D007446 0.0e+00 1138.3 786 72.6
FAN27G0179 Fragaria x ananassa HOM05D006129 ORTHO05D007446 0.0e+00 1118.2 770 72.3
Haze_01881 Corylus avellana HOM05D006129 ORTHO05D007446 0.0e+00 1114.0 778 71.6
CiPaw.05G055300 Carya illinoinensis HOM05D006129 ORTHO05D007446 0.0e+00 1110.1 773 71.0
FvH4_2g06900 Fragaria vesca HOM05D006129 ORTHO05D007446 0.0e+00 1106.3 768 71.5
Cfa005424 Carpinus fangiana HOM05D006129 ORTHO05D007446 0.0e+00 1105.9 778 70.8
CANSAT25G2181 Cannabis sativa HOM05D006129 ORTHO05D007446 0.0e+00 1096.6 772 68.9
FAN15G2181 Fragaria x ananassa HOM05D006129 ORTHO05D007446 0.0e+00 1096.3 769 71.1
FAN24G2628 Fragaria x ananassa HOM05D006129 ORTHO05D007446 0.0e+00 1094.0 768 70.7
GSVIVG01031785001 Vitis vinifera HOM05D006129 ORTHO05D007446 0.0e+00 1087.8 797 68.0
TWI79G0519 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 6.3e-311 1070.5 780 68.5
Dinv42121 Davidia involucrata HOM05D006129 ORTHO05D007446 1.0e-310 1069.7 782 67.9
TWI31G0609 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 1.3e-308 1062.8 778 67.7
Duzib248G0151 Durio zibethinus HOM05D006129 ORTHO05D007446 8.2e-308 1060.1 794 67.1
CSS0025307 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 1.4e-307 1059.3 780 68.3
CSS0048591 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 1.8e-307 1058.9 780 68.3
Thecc.02G095400 Theobroma cacao HOM05D006129 ORTHO05D007446 1.7e-305 1052.4 794 66.9
Lj5P206T15 Lonicera japonica HOM05D006129 ORTHO05D007446 1.9e-304 1048.9 805 65.2
COL.COLO4_11724 Corchorus olitorius HOM05D006129 ORTHO05D007446 1.0e-302 1043.1 747 67.7
Atru.BG.82.p Acer truncatum HOM05D006129 ORTHO05D007446 2.7e-298 1028.5 659 73.7
Cpa.g.sc62.53 Carica papaya HOM05D006129 ORTHO05D007446 2.7e-298 1028.5 818 64.1
MELO3C026699.2 Cucumis melo HOM05D006129 ORTHO05D007446 2.7e-298 1028.5 781 65.6
Gohir.D01G006000 Gossypium hirsutum HOM05D006129 ORTHO05D007446 3.8e-297 1024.6 799 63.8
Gohir.A01G005900 Gossypium hirsutum HOM05D006129 ORTHO05D007446 4.0e-294 1014.6 781 64.5
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 6.8e-294 1013.8 778 65.2
Gorai.002G007000 Gossypium raimondii HOM05D006129 ORTHO05D007446 8.8e-294 1013.4 799 63.3
Manes.17G094600 Manihot esculenta HOM05D006129 ORTHO05D007446 2.0e-293 1012.3 801 63.8
Ciclev10027854m.g Citrus clementina HOM05D006129 ORTHO05D007446 2.8e-292 1008.4 772 65.2
Nn4g23272 Nelumbo nucifera HOM05D006129 ORTHO05D007446 8.3e-292 1006.9 789 63.8
CsaV3_3G028800 Cucumis sativus L. HOM05D006129 ORTHO05D007446 2.3e-289 998.8 778 64.1
Potri.009G106800 Populus trichocarpa HOM05D006129 ORTHO05D007446 4.9e-284 981.1 779 64.2
Lalb_Chr10g0095451 Lupinus albus HOM05D006129 ORTHO05D007446 1.1e-283 979.9 710 66.1
Sed0004701 Sechium edule HOM05D006129 ORTHO05D007446 1.6e-282 976.1 774 62.4
Glyma.20G009700 Glycine max HOM05D006129 ORTHO05D007446 5.6e-280 967.6 772 61.5
Dinv23594 Davidia involucrata HOM05D006129 ORTHO05D007446 4.7e-279 964.5 744 65.5
Rhsim11G0169300 Rhododendron simsii HOM05D006129 ORTHO05D007446 3.1e-278 961.8 730 65.8
vmacro02172 Vaccinium macrocarpon HOM05D006129 ORTHO05D007446 2.6e-277 958.7 761 63.3
Ca_13480_v3 Cicer arietinum L. HOM05D006129 ORTHO05D007446 6.4e-276 954.1 777 60.9
Aqoxy3G03484 Aquilegia oxysepala HOM05D006129 ORTHO05D007446 1.6e-274 949.5 781 61.7
Glyma.07G178800 Glycine max HOM05D006129 ORTHO05D007446 2.7e-274 948.7 773 60.7
Eucgr.L01320 Eucalyptus grandis HOM05D006129 ORTHO05D007446 4.6e-274 948.0 767 62.2
TAR371G0476 Trochodendron aralioides HOM05D006129 ORTHO05D007446 7.8e-274 947.2 728 65.4
Phvul.002G308800 Phaseolus vulgaris HOM05D006129 ORTHO05D007446 6.6e-273 944.1 772 60.8
Lj2g0010354 Lotus japonicus HOM05D006129 ORTHO05D007446 8.6e-273 943.7 699 64.7
THA.LOC104807348 Tarenaya hassleriana HOM05D006129 ORTHO05D007446 1.1e-272 943.3 729 62.8
VMungo0464G0688 Vigna mungo HOM05D006129 ORTHO05D007446 9.5e-272 940.3 772 60.0
DCAR_003623 Daucus carota HOM05D006129 ORTHO05D007446 4.7e-271 937.9 751 62.3
Actinidia12976 Actinidia chinensis HOM05D006129 ORTHO05D007446 4.0e-270 934.9 780 61.7
Medtr1g026035 Medicago truncatula HOM05D006129 ORTHO05D007446 8.9e-270 933.7 773 59.2
TPR.G26422 Trifolium pratense HOM05D006129 ORTHO05D007446 2.6e-269 932.2 776 60.2
Thhalv10022548m.g Eutrema salsugineum HOM05D006129 ORTHO05D007446 2.4e-267 925.6 769 58.6
Sc08g0000140 Simmondsia chinensis HOM05D006129 ORTHO05D007446 2.3e-265 919.1 771 61.3
Peaxi162Scf00789g00530 Petunia axillaris HOM05D006129 ORTHO05D007446 5.6e-264 914.4 782 59.2
PGR042G1055 Punica granatum HOM05D006129 ORTHO05D007446 9.5e-264 913.7 786 59.2
CARHR106180 Cardamine hirsuta HOM05D006129 ORTHO05D007446 1.6e-263 912.9 786 58.7
Oeu057674.1 Olea europaea HOM05D006129 ORTHO05D007446 2.1e-263 912.5 770 59.6
Carub.0003s2972 Capsella rubella HOM05D006129 ORTHO05D007446 4.7e-263 911.4 789 56.9
Sp3g29130 Schrenkiella parvula HOM05D006129 ORTHO05D007446 4.0e-262 908.3 724 60.4
AL3G47590 Arabidopsis lyrata HOM05D006129 ORTHO05D007446 6.8e-262 907.5 792 56.7
arahy.Tifrunner.gnm1.ann1.769PPM Arachis hypogaea HOM05D006129 ORTHO05D007446 6.8e-262 907.5 737 61.3
A07p04960 Brassica napus HOM05D006129 ORTHO05D007446 4.4e-261 904.8 755 58.8
FAN20G2787 Fragaria x ananassa HOM05D006129 ORTHO05D007446 1.0e-257 893.6 606 72.6
Nitab4.5_0001453g0090 Nicotiana tabacum HOM05D006129 ORTHO05D007446 1.3e-257 893.3 803 56.2
Lsat_1_v5_gn_5_113460 Lactuca sativa HOM05D006129 ORTHO05D007446 1.7e-257 892.9 778 58.6
Nitab4.5_0007303g0010 Nicotiana tabacum HOM05D006129 ORTHO05D007446 1.7e-257 892.9 777 57.4
BraA07t28289Z Brassica rapa HOM05D006129 ORTHO05D007446 2.3e-257 892.5 755 58.3
AT2G15820 Arabidopsis thaliana HOM05D006129 ORTHO05D007446 1.1e-256 890.2 797 56.0
Solyc11g066850.3 Solanum lycopersicum HOM05D006129 ORTHO05D007446 1.1e-256 890.2 757 58.1
ECA234G4125 Erigeron canadensis HOM05D006129 ORTHO05D007446 3.6e-255 885.2 772 57.4
BcaC06g36090 Brassica carinata HOM05D006129 ORTHO05D007446 4.7e-255 884.8 755 57.4
C07p07940 Brassica napus HOM05D006129 ORTHO05D007446 4.7e-255 884.8 755 57.4
BolC7t41212H Brassica oleracea HOM05D006129 ORTHO05D007446 4.7e-255 884.8 755 57.4
CAN.G644.34 Capsicum annuum HOM05D006129 ORTHO05D007446 9.9e-253 877.1 684 62.1
HanXRQChr10g0303221 Helianthus annuus HOM05D006129 ORTHO05D007446 1.7e-252 876.3 780 56.7
BcaB03g16332 Brassica carinata HOM05D006129 ORTHO05D007446 6.4e-252 874.4 756 57.1
Aa31LG8G13380 Aethionema arabicum HOM05D006129 ORTHO05D007446 2.5e-248 862.4 715 59.2
MSTRG.20134 Avicennia marina HOM05D006129 ORTHO05D007446 3.2e-243 845.5 712 58.3
Migut.B00306 Erythranthe guttata HOM05D006129 ORTHO05D007446 4.3e-240 835.1 775 53.7
EL10Ac9g21818 Beta vulgaris HOM05D006129 ORTHO05D007446 2.8e-239 832.4 678 59.7
PGSC0003DMG400026525 Solanum tuberosum HOM05D006129 ORTHO05D007446 2.9e-236 822.4 643 61.7
AUR62011424 Chenopodium quinoa HOM05D006129 ORTHO05D007446 9.3e-235 817.4 729 55.0
Ah.01g006750 Amaranthus hybridus HOM05D006129 ORTHO05D007446 2.1e-231 806.2 728 55.6
Sopen11g026560 Solanum pennellii HOM05D006129 ORTHO05D007446 8.2e-231 804.3 643 60.7
Sabra09G0081600 Salix brachista HOM05D006129 ORTHO05D007446 5.3e-230 801.6 567 70.2
unitig_744.g24241 Utricularia gibba HOM05D006129 ORTHO05D007446 5.3e-230 801.6 732 54.0
Os02g0702000 Oryza sativa ssp. japonica HOM05D006129 ORTHO05D007446 1.8e-225 786.6 697 53.7
ATR0665G475 Amborella trichopoda HOM05D006129 ORTHO05D007446 1.3e-223 780.4 658 57.0
Zm00001eb251880 Zea mays HOM05D006129 ORTHO05D007446 1.2e-221 773.9 752 52.0
HPP92_022045 Vanilla planifolia HOM05D006129 ORTHO05D007446 5.9e-221 771.5 689 54.3
SGA_v2.0_scaffold58G20604 Striga asiatica HOM05D006129 ORTHO05D007446 1.2e-218 763.8 782 49.7
AUR62016636 Chenopodium quinoa HOM05D006129 ORTHO05D007446 8.2e-215 751.1 663 55.5
TAR629G1168 Trochodendron aralioides HOM05D006129 ORTHO05D007446 1.8e-214 750.0 531 68.2
Medtr0381s0010 Medicago truncatula HOM05D006129 ORTHO05D007446 5.0e-212 741.9 605 59.5
Eucgr.G01504 Eucalyptus grandis HOM05D006129 ORTHO05D007446 3.8e-204 715.7 763 50.5
Psat6g001360 Pisum sativum HOM05D006129 ORTHO05D007446 5.5e-187 658.7 678 50.6
Eucgr.L00820 Eucalyptus grandis HOM05D006129 ORTHO05D007446 4.4e-184 649.0 543 61.1
SEGI_31419 Sequoiadendron giganteum HOM05D006129 ORTHO05D007446 1.3e-172 610.9 675 45.0
CDE04G1903 Ceratophyllum demersum HOM05D006129 ORTHO05D007446 7.0e-166 588.6 680 46.5
Hund00318 Selenicereus undatus HOM05D006129 ORTHO05D007446 5.8e-144 515.8 405 62.5
Cc02_g18440 Coffea canephora HOM05D006129 ORTHO05D007446 3.0e-140 503.4 451 54.8
Atru.chr5.2887 Acer truncatum HOM05D006129 ORTHO05D007446 7.6e-128 462.2 530 49.1
TAR371G0992 Trochodendron aralioides HOM05D006129 ORTHO05D007446 7.6e-128 462.2 614 44.3
TAR371G0058 Trochodendron aralioides HOM05D006129 ORTHO05D007446 9.7e-107 392.1 370 58.9
Atru.chr5.2823 Acer truncatum HOM05D006129 ORTHO05D007446 1.2e-104 385.2 461 48.8
QL11p038542 Quercus lobata HOM05D006129 ORTHO05D007446 1.7e-98 364.8 309 62.8
Pp3c25_10050 Physcomitrium patens HOM05D006129 ORTHO05D007446 7.2e-94 349.4 660 32.6
Atru.chr5.2826 Acer truncatum HOM05D006129 ORTHO05D007446 4.7e-93 346.7 396 51.3
Atru.chr5.2881 Acer truncatum HOM05D006129 ORTHO05D007446 7.4e-91 339.3 303 57.1
AagrBONN_evm.TU.Sc2ySwM_344.1734 Anthoceros agrestis HOM05D006129 ORTHO05D007446 4.1e-73 280.4 653 29.1
Mapoly0036s0055 Marchantia polymorpha HOM05D006129 ORTHO05D007446 1.2e-67 262.3 658 26.7
SMO356G0628 Selaginella moellendorffii HOM05D006129 ORTHO05D007446 1.7e-66 258.5 685 26.4
AagrBONN_evm.TU.Sc2ySwM_344.5085 Anthoceros agrestis HOM05D006129 ORTHO05D007446 1.9e-62 245.0 664 27.6
TAR629G1760 Trochodendron aralioides HOM05D006129 ORTHO05D007446 3.7e-58 230.7 227 55.1
Pp3c16_23700 Physcomitrium patens HOM05D006129 ORTHO05D007446 9.8e-51 206.1 629 26.6
arahy.Tifrunner.gnm1.ann1.SUMB0F Arachis hypogaea HOM05D006129 ORTHO05D007446 1.4e-44 185.7 163 56.4
Cc02_g18430 Coffea canephora HOM05D006129 ORTHO05D007446 3.1e-44 184.5 144 61.1
QL11p038477 Quercus lobata HOM05D006129 ORTHO05D007446 1.3e-31 142.5 166 51.2
Atru.chr5.2882 Acer truncatum HOM05D006129 ORTHO05D007446 2.3e-23 115.2 197 39.1
Atru.chr5.2820 Acer truncatum HOM05D006129 ORTHO05D007446 9.0e-20 103.2 174 39.1
RcHm_v2.0_Chr6g0302241 Rosa chinensis HOM05D006129 ORTHO05D007446 4.2e-17 94.4 64 65.6
CBR_g8924 Chara braunii HOM05D006129 ORTHO05D007446 2.7e-16 91.7 693 19.2
RcHm_v2.0_Chr1g0376021 Rosa chinensis HOM05D006129 ORTHO05D007446 1.5e-14 85.9 53 73.6
RcHm_v2.0_Chr2g0152801 Rosa chinensis HOM05D006129 ORTHO05D007446 2.8e-13 81.6 55 72.7
RcHm_v2.0_Chr6g0275941 Rosa chinensis HOM05D000300 ORTHO05D000383 9.3e-09 66.6 228 25.4
vmacro13512 Vaccinium macrocarpon HOM05D000300 ORTHO05D000383 1.2e-08 66.2 471 20.8
Pp3c2_12230 Physcomitrium patens HOM05D000001 ORTHO05D000003 2.1e-08 65.5 316 23.1
FAN25G0874 Fragaria x ananassa HOM05D000189 ORTHO05D000474 2.7e-08 65.1 309 21.4
FAN25G0122 Fragaria x ananassa HOM05D000001 ORTHO05D000003 7.9e-08 63.5 309 21.4
Rhsim13G0177100 Rhododendron simsii HOM05D000300 ORTHO05D000383 1.3e-07 62.8 230 22.6
TAR376G0069 Trochodendron aralioides HOM05D000891 ORTHO05D000761 2.3e-07 62.0 226 23.9
arahy.Tifrunner.gnm1.ann1.KF0AV4 Arachis hypogaea HOM05D000300 ORTHO05D000383 3.0e-07 61.6 191 26.7
MSTRG.23543 Avicennia marina HOM05D000891 ORTHO05D000761 3.0e-07 61.6 325 23.1
FAN21G2622 Fragaria x ananassa HOM05D000001 ORTHO05D000003 3.0e-07 61.6 312 22.1
MBI04_g44418_MAGBIO Magnolia biondii HOM05D000300 ORTHO05D000383 3.0e-07 61.6 169 26.6
Oeu022756.1 Olea europaea HOM05D000001 ORTHO05D000003 3.0e-07 61.6 296 26.4
arahy.Tifrunner.gnm1.ann1.1V91HL Arachis hypogaea HOM05D000300 ORTHO05D000383 3.9e-07 61.2 191 26.7
ClCG07G009040 Citrullus lanatus HOM05D000891 ORTHO05D000761 3.9e-07 61.2 225 24.9
Cc01_g19520 Coffea canephora HOM05D000300 ORTHO05D000383 5.1e-07 60.8 170 27.1
CiPaw.01G035200 Carya illinoinensis HOM05D000891 ORTHO05D000761 6.7e-07 60.5 279 21.5
COL.COLO4_22110 Corchorus olitorius HOM05D000891 ORTHO05D000761 6.7e-07 60.5 226 23.9
CsaV3_4G005170 Cucumis sativus L. HOM05D000891 ORTHO05D000761 6.7e-07 60.5 225 24.4
Sabra13G0112700 Salix brachista HOM05D000300 ORTHO05D000383 6.7e-07 60.5 238 23.9
Cfa000434 Carpinus fangiana HOM05D000300 ORTHO05D000383 8.7e-07 60.1 196 23.5
FAN07G0233 Fragaria x ananassa HOM05D008684 ORTHO05D010796 8.7e-07 60.1 413 20.6
Haze_15114 Corylus avellana HOM05D000891 ORTHO05D000761 1.1e-06 59.7 279 19.7
FvH4_7g21891 Fragaria vesca HOM05D000001 ORTHO05D000003 1.1e-06 59.7 319 22.3
CANSAT78G0733 Cannabis sativa HOM05D000300 ORTHO05D000383 1.5e-06 59.3 255 23.9
Haze_06481 Corylus avellana HOM05D000300 ORTHO05D000383 1.5e-06 59.3 147 28.6
FvH4_3g28010 Fragaria vesca HOM05D000001 ORTHO05D000003 1.9e-06 58.9 312 21.8
FAN06G4187 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.9e-06 58.9 223 22.9
ATR0618G176 Amborella trichopoda HOM05D002022 ORTHO05D002056 2.5e-06 58.5 262 23.7
AL1G27600 Arabidopsis lyrata HOM05D002649 ORTHO05D002838 2.5e-06 58.5 194 22.7
FvH4_4g11480 Fragaria vesca HOM05D008684 ORTHO05D010796 2.5e-06 58.5 409 19.3
Lsat_1_v5_gn_9_4760 Lactuca sativa HOM05D000300 ORTHO05D000383 2.5e-06 58.5 193 27.5
MD03G1167900 Malus domestica HOM05D000001 ORTHO05D000003 2.5e-06 58.5 290 22.1
RcHm_v2.0_Chr5g0064501 Rosa chinensis HOM05D006354 ORTHO05D007773 2.5e-06 58.5 467 19.9
Thhalv10027579m.g Eutrema salsugineum HOM05D000891 ORTHO05D000761 3.3e-06 58.2 223 23.8
HanXRQChr10g0301221 Helianthus annuus HOM05D000300 ORTHO05D000383 4.3e-06 57.8 194 24.7
MD07G1193300 Malus domestica HOM05D000001 ORTHO05D000003 4.3e-06 57.8 304 23.4
FAN11G1860 Fragaria x ananassa HOM05D000001 ORTHO05D000003 5.6e-06 57.4 274 21.2
Sabra13G0112000 Salix brachista HOM05D000300 ORTHO05D000383 5.6e-06 57.4 306 23.9
VMungo0540G1368 Vigna mungo HOM05D000300 ORTHO05D000383 5.6e-06 57.4 157 28.0
SMO364G0400 Selaginella moellendorffii HOM05D000001 ORTHO05D000003 7.4e-06 57.0 215 24.2
AL7G14330 Arabidopsis lyrata HOM05D000891 ORTHO05D000761 9.6e-06 56.6 223 23.8
Os01g0280400 Oryza sativa ssp. japonica HOM05D002649 ORTHO05D002838 9.6e-06 56.6 142 25.4
PSO302G0202 Papaver somniferum HOM05D000300 ORTHO05D000383 9.6e-06 56.6 344 23.0
Rhsim11G0156000 Rhododendron simsii HOM05D000001 ORTHO05D010467 9.6e-06 56.6 206 25.7
TAR371G0388 Trochodendron aralioides HOM05D001464 ORTHO05D002836 9.6e-06 56.6 59 49.2


User provided reference genes

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