Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G152500 Phaseolus vulgaris HOM05D004358 ORTHO05D004960 5.5e-181 637.5 319 100.0
Glyma.13G343700 Glycine max HOM05D004358 ORTHO05D004960 3.5e-119 432.2 319 72.7
Ca_01263_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 1.3e-102 377.1 252 75.8
Lj3g0017360 Lotus japonicus HOM05D004358 ORTHO05D004960 2.3e-102 376.3 240 76.7
arahy.Tifrunner.gnm1.ann1.VZ0ARL Arachis hypogaea HOM05D004358 ORTHO05D004960 6.7e-102 374.8 256 72.7
VMungo1127G0908 Vigna mungo HOM05D004358 ORTHO05D004960 1.1e-101 374.0 271 70.1
Medtr2g098660 Medicago truncatula HOM05D004358 ORTHO05D004960 3.3e-101 372.5 319 64.9
Glyma.11G128600 Glycine max HOM05D004358 ORTHO05D004960 9.6e-101 370.9 251 74.9
Cfa015153 Carpinus fangiana HOM05D004358 ORTHO05D004960 1.6e-100 370.2 283 67.5
arahy.Tifrunner.gnm1.ann1.CJKM5C Arachis hypogaea HOM05D004358 ORTHO05D004960 2.8e-100 369.4 241 74.7
Lj3g0009399 Lotus japonicus HOM05D004358 ORTHO05D004960 3.7e-100 369.0 252 72.6
CANSAT78G2120 Cannabis sativa HOM05D004358 ORTHO05D004960 2.0e-98 363.2 254 70.9
Phvul.011G055100 Phaseolus vulgaris HOM05D004358 ORTHO05D004960 4.5e-98 362.1 279 68.1
CiPaw.02G055200 Carya illinoinensis HOM05D004358 ORTHO05D004960 7.6e-98 361.3 314 61.8
MD04G1007400 Malus domestica HOM05D004358 ORTHO05D004960 1.7e-97 360.1 275 67.6
Lalb_Chr01g0003211 Lupinus albus HOM05D004358 ORTHO05D004960 2.2e-97 359.8 248 72.2
Potri.007G127600 Populus trichocarpa HOM05D004358 ORTHO05D004960 2.2e-97 359.8 248 71.0
Dinv22724 Davidia involucrata HOM05D004358 ORTHO05D004960 3.8e-97 359.0 333 58.0
Ciclev10020813m.g Citrus clementina HOM05D004358 ORTHO05D004960 6.5e-97 358.2 286 64.3
CsaV3_4G003300 Cucumis sativus L. HOM05D004358 ORTHO05D004960 1.4e-96 357.1 244 73.4
RcHm_v2.0_Chr4g0407021 Rosa chinensis HOM05D004358 ORTHO05D004960 2.5e-96 356.3 304 61.8
Ca_20780_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 3.2e-96 355.9 251 71.3
MELO3C017721.2 Cucumis melo HOM05D004358 ORTHO05D004960 9.3e-96 354.4 248 73.0
Prupe.1G191600 Prunus persica HOM05D004358 ORTHO05D004960 9.3e-96 354.4 251 70.9
Manes.04G041200 Manihot esculenta HOM05D004358 ORTHO05D004960 3.5e-95 352.4 251 69.7
TWI59G0142 Tripterygium wilfordii HOM05D004358 ORTHO05D004960 7.9e-95 351.3 248 71.0
GSVIVG01010748001 Vitis vinifera HOM05D004358 ORTHO05D004960 3.0e-94 349.4 279 64.9
COL.COLO4_02723 Corchorus olitorius HOM05D004358 ORTHO05D004960 5.1e-94 348.6 248 69.0
FAN12G1706 Fragaria x ananassa HOM05D004358 ORTHO05D004960 6.7e-94 348.2 276 65.2
Cc00_g17220 Coffea canephora HOM05D004358 ORTHO05D004960 1.5e-93 347.1 301 61.1
Atru.chr3.1531 Acer truncatum HOM05D004358 ORTHO05D004960 1.9e-93 346.7 241 70.1
Sc13g0005360 Simmondsia chinensis HOM05D004358 ORTHO05D004960 1.9e-93 346.7 238 71.8
Duzib151G0384 Durio zibethinus HOM05D004358 ORTHO05D004960 2.5e-93 346.3 248 70.2
Gorai.011G146700 Gossypium raimondii HOM05D004358 ORTHO05D004960 2.5e-93 346.3 250 70.4
Sed0019525 Sechium edule HOM05D004358 ORTHO05D004960 3.3e-93 345.9 250 69.6
Actinidia39855 Actinidia chinensis HOM05D004358 ORTHO05D004960 4.3e-93 345.5 249 69.5
Psat7g213960 Pisum sativum HOM05D004358 ORTHO05D004960 4.3e-93 345.5 254 67.7
Ah.13g072910 Amaranthus hybridus HOM05D004358 ORTHO05D004960 1.3e-92 344.0 304 60.9
FvH4_4g10690 Fragaria vesca HOM05D004358 ORTHO05D004960 1.6e-92 343.6 332 56.0
FAN12G4165 Fragaria x ananassa HOM05D004358 ORTHO05D004960 1.6e-92 343.6 332 56.0
TAR362G1164 Trochodendron aralioides HOM05D004358 ORTHO05D004960 1.6e-92 343.6 250 68.0
arahy.Tifrunner.gnm1.ann1.98UW30 Arachis hypogaea HOM05D004358 ORTHO05D004960 6.2e-92 341.7 208 78.4
TPR.G34203 Trifolium pratense HOM05D004358 ORTHO05D004960 6.2e-92 341.7 246 68.3
MSTRG.6615 Avicennia marina HOM05D004358 ORTHO05D004960 8.2e-92 341.3 305 61.0
Sopen06g029780 Solanum pennellii HOM05D004358 ORTHO05D004960 8.2e-92 341.3 255 68.2
Solyc06g073400.3 Solanum lycopersicum HOM05D004358 ORTHO05D004960 1.1e-91 340.9 255 68.2
Nitab4.5_0005570g0020 Nicotiana tabacum HOM05D004358 ORTHO05D004960 1.8e-91 340.1 264 67.4
Medtr4g067060 Medicago truncatula HOM05D004358 ORTHO05D004960 4.1e-91 339.0 249 68.3
unitig_8.g4603 Utricularia gibba HOM05D004358 ORTHO05D004960 4.1e-91 339.0 249 67.5
Atru.chr3.1534 Acer truncatum HOM05D004358 ORTHO05D004960 3.4e-90 335.9 248 67.3
PGSC0003DMG401006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 3.4e-90 335.9 296 60.1
TAR636G1513 Trochodendron aralioides HOM05D004358 ORTHO05D004960 3.4e-90 335.9 240 68.3
AUR62002292 Chenopodium quinoa HOM05D004358 ORTHO05D004960 5.8e-90 335.1 268 63.1
FAN07G2248 Fragaria x ananassa HOM05D004358 ORTHO05D004960 1.7e-89 333.6 299 59.9
PGR142G0453 Punica granatum HOM05D004358 ORTHO05D004960 1.7e-89 333.6 269 64.7
THA.LOC104827388 Tarenaya hassleriana HOM05D004358 ORTHO05D004960 3.8e-89 332.4 246 65.9
CAN.G749.19 Capsicum annuum HOM05D004358 ORTHO05D004960 5.0e-89 332.0 305 58.7
Ciclev10020816m.g Citrus clementina HOM05D004358 ORTHO05D004960 5.0e-89 332.0 266 63.2
Peaxi162Scf00375g00513 Petunia axillaris HOM05D004358 ORTHO05D004960 6.5e-89 331.6 275 63.3
Aa31LG5G5430 Aethionema arabicum HOM05D004358 ORTHO05D004960 8.4e-89 331.3 252 65.5
Hund03152 Selenicereus undatus HOM05D004358 ORTHO05D004960 8.4e-89 331.3 256 64.8
Hund03151 Selenicereus undatus HOM05D004358 ORTHO05D004960 1.1e-88 330.9 248 64.5
AL1G15860 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 1.4e-88 330.5 249 65.1
Thhalv10016815m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 1.9e-88 330.1 247 65.6
Sp4g13930 Schrenkiella parvula HOM05D004358 ORTHO05D004960 1.9e-88 330.1 247 66.0
AT1G05900 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 2.5e-88 329.7 249 65.1
AT2G31450 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 2.5e-88 329.7 250 66.0
CARHR125100 Cardamine hirsuta HOM05D004358 ORTHO05D004960 7.2e-88 328.2 248 65.7
Nitab4.5_0001787g0060 Nicotiana tabacum HOM05D004358 ORTHO05D004960 7.2e-88 328.2 314 57.3
Carub.0004s1278 Capsella rubella HOM05D004358 ORTHO05D004960 9.3e-88 327.8 327 55.0
Thhalv10007955m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 9.3e-88 327.8 249 67.1
Sopen09g031880 Solanum pennellii HOM05D004358 ORTHO05D004960 9.3e-88 327.8 263 62.7
ATR0686G198 Amborella trichopoda HOM05D004358 ORTHO05D004960 2.7e-87 326.2 248 63.7
AL4G26720 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 2.7e-87 326.2 288 59.0
BolC8t52682H Brassica oleracea HOM05D004358 ORTHO05D004960 3.5e-87 325.9 291 57.4
A09p67250 Brassica napus HOM05D004358 ORTHO05D004960 4.6e-87 325.5 247 64.8
BraA09t42058Z Brassica rapa HOM05D004358 ORTHO05D005739 4.6e-87 325.5 247 64.8
Carub.0001s0527 Capsella rubella HOM05D004358 ORTHO05D004960 6.1e-87 325.1 308 54.2
PSO675G5046 Papaver somniferum HOM05D004358 ORTHO05D004960 7.9e-87 324.7 243 67.1
A03p17630 Brassica napus HOM05D004358 ORTHO05D004960 1.0e-86 324.3 240 66.7
BraA03t11028Z Brassica rapa HOM05D004358 ORTHO05D004960 1.0e-86 324.3 240 66.7
PSO732G0278 Papaver somniferum HOM05D004358 ORTHO05D004960 1.0e-86 324.3 245 67.8
BcaB01g04044 Brassica carinata HOM05D004358 ORTHO05D004960 1.3e-86 323.9 285 58.2
C08p51540 Brassica napus HOM05D004358 ORTHO05D004960 1.3e-86 323.9 317 54.6
C03p20720 Brassica napus HOM05D004358 ORTHO05D004960 3.0e-86 322.8 247 64.8
BolC3t14451H Brassica oleracea HOM05D004358 ORTHO05D004960 3.0e-86 322.8 247 64.8
SalBow7G0323 Salvia bowleyana HOM05D004358 ORTHO05D004960 3.9e-86 322.4 292 58.2
CAN.G65.181 Capsicum annuum HOM05D004358 ORTHO05D004960 6.7e-86 321.6 259 63.7
BcaC01g05950 Brassica carinata HOM05D004358 ORTHO05D004960 8.7e-86 321.2 244 65.2
AUR62015399 Chenopodium quinoa HOM05D004358 ORTHO05D004960 1.9e-85 320.1 246 65.0
Peaxi162Scf00058g01717 Petunia axillaris HOM05D004358 ORTHO05D004960 2.5e-85 319.7 304 58.6
BcaC07g42102 Brassica carinata HOM05D004358 ORTHO05D004960 5.7e-85 318.5 309 54.7
PSO732G0822 Papaver somniferum HOM05D004358 ORTHO05D004960 9.7e-85 317.8 243 65.4
Psat1g007160 Pisum sativum HOM05D004358 ORTHO05D004960 3.7e-84 315.8 274 62.8
Nn1g09578 Nelumbo nucifera HOM05D004358 ORTHO05D004960 5.3e-83 312.0 209 70.3
arahy.Tifrunner.gnm1.ann1.Z962T9 Arachis hypogaea HOM05D004358 ORTHO05D004960 9.0e-83 311.2 202 75.7
Nitab4.5_0000941g0030 Nicotiana tabacum HOM05D004358 ORTHO05D004960 1.2e-82 310.8 314 55.7
ECA236G3148 Erigeron canadensis HOM05D004358 ORTHO05D004960 1.5e-82 310.5 243 61.3
SGA_v2.0_scaffold181G39728 Striga asiatica HOM05D004358 ORTHO05D004960 7.7e-82 308.1 292 56.8
Sabra07G0103600 Salix brachista HOM05D004358 ORTHO05D004960 1.3e-81 307.4 268 60.4
EL10Ac3g05922 Beta vulgaris HOM05D004358 ORTHO05D004960 2.2e-81 306.6 249 62.2
Lsat_1_v5_gn_8_80540 Lactuca sativa HOM05D004358 ORTHO05D004960 2.9e-81 306.2 232 65.1
SHI24906 Sapria himalayana HOM05D004358 ORTHO05D004960 6.5e-81 305.1 287 55.7
HanXRQChr06g0172341 Helianthus annuus HOM05D004358 ORTHO05D004960 1.4e-80 303.9 325 52.6
QL10p048514 Quercus lobata HOM05D004358 ORTHO05D004960 2.5e-80 303.1 186 76.3
Rhsim02G0076600 Rhododendron simsii HOM05D004358 ORTHO05D004960 4.2e-80 302.4 361 48.8
vmacro15647 Vaccinium macrocarpon HOM05D004358 ORTHO05D004960 4.2e-80 302.4 305 53.8
Haze_01520 Corylus avellana HOM05D004358 ORTHO05D004960 2.1e-79 300.1 220 65.9
Gohir.D10G133000 Gossypium hirsutum HOM05D004358 ORTHO05D004960 1.4e-78 297.4 247 62.8
ClCG07G015600 Citrullus lanatus HOM05D004358 ORTHO05D004960 8.8e-78 294.7 199 71.4
CSS0013619 Camellia sinensis var. sinensis HOM05D004358 ORTHO05D004960 7.4e-77 291.6 242 61.6
Aqoxy7G00191 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 9.7e-77 291.2 246 60.2
Aqoxy7G00192 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 9.7e-77 291.2 254 60.6
DCAR_028143 Daucus carota HOM05D004358 ORTHO05D004960 1.3e-76 290.8 184 73.4
ECA236G1172 Erigeron canadensis HOM05D004358 ORTHO05D004960 9.1e-75 284.6 205 68.8
SMO347G0587 Selaginella moellendorffii HOM05D004358 ORTHO05D004960 3.4e-74 282.7 238 60.1
Thecc.04G185400 Theobroma cacao HOM05D004358 ORTHO05D004960 3.4e-74 282.7 300 54.3
Zm00001eb406830 Zea mays HOM05D004358 ORTHO05D004960 3.4e-74 282.7 239 57.7
Solyc09g083003.1 Solanum lycopersicum HOM05D004358 ORTHO05D004960 3.8e-73 279.3 184 69.6
CARHR005460 Cardamine hirsuta HOM05D004358 ORTHO05D004960 1.1e-72 277.7 184 69.6
Eucgr.H00376 Eucalyptus grandis HOM05D004358 ORTHO05D004960 3.2e-72 276.2 169 75.7
Mapoly0058s0068 Marchantia polymorpha HOM05D004358 ORTHO05D004960 7.2e-72 275.0 259 52.9
CBR_g29622 Chara braunii HOM05D004358 ORTHO05D004960 1.2e-66 257.7 237 55.3
Mapoly0058s0067 Marchantia polymorpha HOM05D004358 ORTHO05D004960 2.9e-65 253.1 247 53.4
Nitab4.5_0003132g0140 Nicotiana tabacum HOM05D004358 ORTHO05D004960 3.8e-65 252.7 245 57.6
Migut.M00111 Erythranthe guttata HOM05D004358 ORTHO05D004960 1.7e-60 237.3 183 67.8
SalBow7G1435 Salvia bowleyana HOM05D004358 ORTHO05D004960 1.0e-57 228.0 129 76.0
Sp1g04740 Schrenkiella parvula HOM05D004358 ORTHO05D004960 5.0e-57 225.7 232 51.7
Haze_27447 Corylus avellana HOM05D004358 ORTHO05D004960 7.7e-50 201.8 231 47.6
Ca_18838_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 1.3e-49 201.1 114 81.6
Gohir.A10G133700 Gossypium hirsutum HOM05D004358 ORTHO05D004960 9.8e-45 184.9 149 66.4
CAN.G80.26 Capsicum annuum HOM05D004358 ORTHO05D004960 7.0e-43 178.7 219 48.4
Glyma.12G053100 Glycine max HOM05D004358 ORTHO05D004960 1.6e-42 177.6 110 74.5
PGSC0003DMG401026906 Solanum tuberosum HOM05D004358 ORTHO05D004960 1.6e-42 177.6 106 75.5
Pp3c17_17810 Physcomitrium patens HOM05D004358 ORTHO05D004960 1.0e-41 174.9 239 40.6
Cfa026201 Carpinus fangiana HOM05D004358 ORTHO05D004960 5.7e-37 159.1 288 38.2
AagrBONN_evm.TU.Sc2ySwM_368.679 Anthoceros agrestis HOM05D004358 ORTHO05D004960 4.1e-35 152.9 210 41.0
BcaC07g42101 Brassica carinata HOM05D004358 ORTHO05D004960 3.9e-33 146.4 99 72.7
DCAR_028139 Daucus carota HOM05D004358 ORTHO05D004960 9.5e-32 141.7 75 81.3
Glyma.15G030650 Glycine max HOM05D004358 ORTHO05D004960 1.2e-31 141.4 98 78.6
Mapoly0058s0064 Marchantia polymorpha HOM05D004358 ORTHO05D004960 4.4e-29 132.9 92 62.0
Cpa.g.sc41.25 Carica papaya HOM05D004358 ORTHO05D004960 9.8e-21 105.1 74 64.9
Cpa.g.sc41.31 Carica papaya HOM05D004358 ORTHO05D004960 1.9e-19 100.9 60 71.7
Rhsim02G0076400 Rhododendron simsii HOM05D004358 ORTHO05D004960 1.2e-18 98.2 94 52.1
Cre17.g732050 Chlamydomonas reinhardtii HOM05D004358 ORTHO05D004960 2.8e-15 87.0 186 31.7
PGSC0003DMG402006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 4.7e-15 86.3 56 69.6
Ca_29315_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 2.6e-13 80.5 154 31.8
PRCOL_00001550 Prasinoderma coloniale HOM05D004358 ORTHO05D004960 2.4e-11 73.9 164 30.5
QL10p048520 Quercus lobata HOM05D004358 ORTHO05D004960 1.7e-09 67.8 70 58.6
Lj3C203G5 Lonicera japonica HOM05D009066 ORTHO05D004960 4.3e-08 63.2 37 67.6
MCO12G048 Micromonas commoda HOM05D006570 ORTHO05D008193 1.6e-07 61.2 208 27.4
Pp3c18_200 Physcomitrium patens HOM05D006570 ORTHO05D008193 1.6e-07 61.2 188 29.3
Lj3A203T17 Lonicera japonica HOM05D004358 ORTHO05D004960 2.8e-07 60.5 63 58.7
PGSC0003DMG402026906 Solanum tuberosum HOM05D004358 ORTHO05D004960 6.2e-07 59.3 77 53.2
SalBow1G3505 Salvia bowleyana HOM05D004358 ORTHO05D004960 2.4e-06 57.4 128 39.1
C01p04760 Brassica napus HOM05D001201 ORTHO05D001100 3.1e-06 57.0 185 27.0
BolC1t00460H Brassica oleracea HOM05D001201 ORTHO05D001100 3.1e-06 57.0 185 27.0
Solyc09g083007.1 Solanum lycopersicum HOM05D004358 ORTHO05D004960 3.1e-06 57.0 79 48.1
Thecc.01G203700 Theobroma cacao HOM05D006570 ORTHO05D008193 4.0e-06 56.6 197 25.4
Gohir.D08G144100 Gossypium hirsutum HOM05D004358 ORTHO05D004960 8.9e-06 55.5 76 50.0


User provided reference genes

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