Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G205800 Phaseolus vulgaris HOM05D004484 ORTHO05D005370 0.0e+00 1365.9 687 100.0
Glyma.05G125700 Glycine max HOM05D004484 ORTHO05D005370 0.0e+00 1185.6 682 86.8
VMungo0251G1206 Vigna mungo HOM05D004484 ORTHO05D005370 0.0e+00 1185.6 683 87.1
Medtr4g023560 Medicago truncatula HOM05D004484 ORTHO05D005370 0.0e+00 1122.5 681 81.6
Ca_19886_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 0.0e+00 1120.9 682 82.4
Lj3g0013484 Lotus japonicus HOM05D004484 ORTHO05D005370 0.0e+00 1106.7 679 82.0
Psat7g233440 Pisum sativum HOM05D004484 ORTHO05D005370 0.0e+00 1097.4 681 80.8
Ca_27059_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 0.0e+00 1093.2 682 80.1
Lalb_Chr13g0291731 Lupinus albus HOM05D004484 ORTHO05D005370 0.0e+00 1083.6 683 79.2
Lalb_Chr12g0208261 Lupinus albus HOM05D004484 ORTHO05D005370 2.2e-296 1021.9 683 74.8
arahy.Tifrunner.gnm1.ann1.6K85L9 Arachis hypogaea HOM05D004484 ORTHO05D005370 3.9e-293 1011.1 683 75.8
arahy.Tifrunner.gnm1.ann1.HW1IVJ Arachis hypogaea HOM05D004484 ORTHO05D005370 3.9e-293 1011.1 683 75.8
arahy.Tifrunner.gnm1.ann1.V1M046 Arachis hypogaea HOM05D004484 ORTHO05D005370 3.9e-293 1011.1 683 75.8
TPR.G9845 Trifolium pratense HOM05D004484 ORTHO05D005370 2.6e-292 1008.4 713 72.5
arahy.Tifrunner.gnm1.ann1.Q9SWB6 Arachis hypogaea HOM05D004484 ORTHO05D005370 3.3e-292 1008.1 683 75.3
QL08p052472 Quercus lobata HOM05D004484 ORTHO05D005370 8.5e-288 993.4 685 72.3
Dinv32377 Davidia involucrata HOM05D004484 ORTHO05D005370 1.6e-286 989.2 686 72.0
CiPaw.01G262000 Carya illinoinensis HOM05D004484 ORTHO05D005370 3.4e-284 981.5 684 71.1
Prupe.2G145600 Prunus persica HOM05D004484 ORTHO05D005370 6.3e-283 977.2 683 70.1
Haze_16815 Corylus avellana HOM05D004484 ORTHO05D005370 2.9e-280 968.4 742 66.6
MD07G1121000 Malus domestica HOM05D004484 ORTHO05D005370 7.2e-279 963.8 683 70.0
Sed0020955 Sechium edule HOM05D004484 ORTHO05D005370 4.1e-274 948.0 684 68.4
Potri.014G069700 Populus trichocarpa HOM05D004484 ORTHO05D005370 5.4e-274 947.6 682 68.5
Eucgr.E01418 Eucalyptus grandis HOM05D004484 ORTHO05D005370 1.0e-272 943.3 683 68.1
Aqoxy5G00403 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 2.3e-272 942.2 684 68.4
Atru.chr5.309 Acer truncatum HOM05D004484 ORTHO05D005370 2.9e-272 941.8 685 68.0
GSVIVG01027610001 Vitis vinifera HOM05D004484 ORTHO05D005370 1.9e-271 939.1 672 69.6
Hma1.2p1_0086F.1_g044870 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 9.5e-271 936.8 685 68.5
Thecc.01G376200 Theobroma cacao HOM05D004484 ORTHO05D005370 1.2e-270 936.4 685 67.6
Lj7A528T57 Lonicera japonica HOM05D004484 ORTHO05D005370 1.6e-270 936.0 697 68.6
PSO478G5008 Papaver somniferum HOM05D004484 ORTHO05D005370 3.6e-270 934.9 686 67.9
TWI23G0227 Tripterygium wilfordii HOM05D004484 ORTHO05D005370 8.0e-270 933.7 684 68.1
Manes.01G265900 Manihot esculenta HOM05D004484 ORTHO05D005370 1.4e-269 932.9 686 67.8
CANSAT56G4533 Cannabis sativa HOM05D004484 ORTHO05D005370 1.2e-268 929.9 685 68.3
Cc02_g36700 Coffea canephora HOM05D004484 ORTHO05D005370 2.0e-268 929.1 684 67.4
CSS0036976 Camellia sinensis var. sinensis HOM05D004484 ORTHO05D005370 2.6e-268 928.7 689 69.2
FvH4_7g11900 Fragaria vesca HOM05D004484 ORTHO05D005370 9.8e-268 926.8 683 64.7
FAN01G0628 Fragaria x ananassa HOM05D004484 ORTHO05D005370 8.3e-267 923.7 683 64.6
Oeu055487.1 Olea europaea HOM05D004484 ORTHO05D005370 5.4e-266 921.0 685 66.6
ClCG05G002220 Citrullus lanatus HOM05D004484 ORTHO05D005370 7.0e-266 920.6 684 67.4
CANSAT56G1200 Cannabis sativa HOM05D004484 ORTHO05D005370 1.2e-265 919.8 685 67.4
FAN06G3319 Fragaria x ananassa HOM05D004484 ORTHO05D005370 3.5e-265 918.3 683 64.4
CsaV3_3G009680 Cucumis sativus L. HOM05D004484 ORTHO05D005370 4.5e-265 917.9 685 66.1
FAN10G1483 Fragaria x ananassa HOM05D004484 ORTHO05D005370 7.8e-265 917.1 683 64.4
Nitab4.5_0000457g0330 Nicotiana tabacum HOM05D004484 ORTHO05D005370 1.7e-264 916.0 687 65.8
FAN06G1787 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.9e-264 915.2 683 64.3
FAN10G2369 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.9e-263 912.5 683 64.1
CAN.G388.13 Capsicum annuum HOM05D004484 ORTHO05D005370 5.6e-263 911.0 683 65.7
TAR629G2468 Trochodendron aralioides HOM05D004484 ORTHO05D005370 5.6e-263 911.0 668 68.3
Nn1g01233 Nelumbo nucifera HOM05D004484 ORTHO05D005370 4.7e-262 907.9 681 65.6
Peaxi162Scf00021g01723 Petunia axillaris HOM05D004484 ORTHO05D005370 8.0e-262 907.1 687 65.2
DCAR_015907 Daucus carota HOM05D004484 ORTHO05D005370 1.5e-260 902.9 686 65.5
PGR042G0667 Punica granatum HOM05D004484 ORTHO05D005370 3.7e-259 898.3 687 64.9
ECA234G1700 Erigeron canadensis HOM05D004484 ORTHO05D005370 2.4e-258 895.6 686 65.5
Sabra14G0049400 Salix brachista HOM05D004484 ORTHO05D005370 2.4e-258 895.6 696 63.9
Cpa.g.sc18.115 Carica papaya HOM05D004484 ORTHO05D005370 1.2e-257 893.3 687 64.5
MELO3C006188.2 Cucumis melo HOM05D004484 ORTHO05D005370 1.6e-257 892.9 654 67.3
PGSC0003DMG400012761 Solanum tuberosum HOM05D004484 ORTHO05D005370 4.6e-257 891.3 683 64.6
Gorai.007G091100 Gossypium raimondii HOM05D004484 ORTHO05D005370 1.0e-256 890.2 683 64.3
Sc02g0002590 Simmondsia chinensis HOM05D004484 ORTHO05D005370 5.0e-256 887.9 669 65.2
Gohir.D11G085300 Gossypium hirsutum HOM05D004484 ORTHO05D005370 1.5e-255 886.3 683 64.3
MSTRG.20748 Avicennia marina HOM05D004484 ORTHO05D005370 1.9e-255 885.9 683 64.4
HanXRQChr16g0520161 Helianthus annuus HOM05D004484 ORTHO05D005370 1.9e-255 885.9 686 64.4
Ciclev10019016m.g Citrus clementina HOM05D004484 ORTHO05D005370 4.3e-255 884.8 689 63.7
MBI12_g10758_MAGBIO Magnolia biondii HOM05D004484 ORTHO05D005370 4.3e-255 884.8 714 63.6
Nitab4.5_0005372g0070 Nicotiana tabacum HOM05D004484 ORTHO05D005370 3.6e-254 881.7 701 63.3
Gohir.A11G080700 Gossypium hirsutum HOM05D004484 ORTHO05D005370 1.8e-253 879.4 683 63.5
Solyc01g091350.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 1.8e-253 879.4 684 63.6
Sopen01g037090 Solanum pennellii HOM05D004484 ORTHO05D005370 1.2e-252 876.7 683 63.0
SGA_v2.0_scaffold153G37012 Striga asiatica HOM05D004484 ORTHO05D005370 3.4e-252 875.2 685 63.8
Migut.B01635 Erythranthe guttata HOM05D004484 ORTHO05D005370 8.3e-251 870.5 684 63.5
EL10Ac1g00900 Beta vulgaris HOM05D004484 ORTHO05D005370 1.1e-250 870.2 704 60.8
Lsat_1_v5_gn_4_43240 Lactuca sativa HOM05D004484 ORTHO05D005370 5.4e-250 867.8 681 64.0
vmacro13399 Vaccinium macrocarpon HOM05D004484 ORTHO05D005370 1.3e-248 863.2 685 64.7
FAN03G1897 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.6e-246 856.3 684 61.7
AUR62004221 Chenopodium quinoa HOM05D004484 ORTHO05D005370 8.1e-246 854.0 715 60.3
Aqoxy3G02138 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 1.4e-245 853.2 682 61.6
Ah.13g073490 Amaranthus hybridus HOM05D004484 ORTHO05D005370 3.3e-239 832.0 709 60.1
Cfa001721 Carpinus fangiana HOM05D004484 ORTHO05D005370 8.1e-238 827.4 584 71.6
SHI13523 Sapria himalayana HOM05D004484 ORTHO05D005370 1.3e-235 820.1 662 62.1
THA.LOC104817247 Tarenaya hassleriana HOM05D004484 ORTHO05D005370 1.0e-232 810.4 682 60.6
GSVIVG01027609001 Vitis vinifera HOM05D004484 ORTHO05D005370 7.3e-231 804.3 656 61.7
arahy.Tifrunner.gnm1.ann1.03ZR4A Arachis hypogaea HOM05D004484 ORTHO05D005370 3.1e-229 798.9 676 62.7
arahy.Tifrunner.gnm1.ann1.5WGS6V Arachis hypogaea HOM05D004484 ORTHO05D005370 4.9e-227 791.6 657 63.8
BcaB04g17469 Brassica carinata HOM05D004484 ORTHO05D005370 1.6e-225 786.6 685 56.6
Carub.0001s3716 Capsella rubella HOM05D004484 ORTHO05D005370 4.6e-225 785.0 683 57.1
Sp1g35020 Schrenkiella parvula HOM05D004484 ORTHO05D005370 2.5e-223 779.2 673 56.9
BraSC267t45947Z Brassica rapa HOM05D004484 ORTHO05D005370 5.6e-223 778.1 683 56.4
AUR62013627 Chenopodium quinoa HOM05D004484 ORTHO05D005370 1.3e-222 776.9 703 57.8
C08p05620 Brassica napus HOM05D004484 ORTHO05D005370 2.8e-222 775.8 683 56.8
BolC8t47375H Brassica oleracea HOM05D004484 ORTHO05D005370 2.8e-222 775.8 683 56.8
BcaC07g37180 Brassica carinata HOM05D004484 ORTHO05D005370 9.0e-221 770.8 685 56.8
AT1G48050 Arabidopsis thaliana HOM05D004484 ORTHO05D005370 1.5e-220 770.0 682 56.2
CARHR037700 Cardamine hirsuta HOM05D004484 ORTHO05D005370 4.5e-220 768.5 681 56.4
AL1G54570 Arabidopsis lyrata HOM05D004484 ORTHO05D005370 1.9e-218 763.1 670 56.6
A08p05330 Brassica napus HOM05D004484 ORTHO05D005370 8.1e-214 747.7 667 55.9
Hund27347 Selenicereus undatus HOM05D004484 ORTHO05D005370 4.0e-213 745.3 605 62.8
arahy.Tifrunner.gnm1.ann1.5492A7 Arachis hypogaea HOM05D004484 ORTHO05D005370 2.6e-212 742.7 667 60.7
Zm00001eb064930 Zea mays HOM05D004484 ORTHO05D005370 5.7e-207 724.9 676 55.5
arahy.Tifrunner.gnm1.ann1.T9R8PC Arachis hypogaea HOM05D004484 ORTHO05D005370 6.2e-206 721.5 671 59.2
HPP92_027818 Vanilla planifolia HOM05D004484 ORTHO05D005370 1.1e-199 700.7 680 53.5
COL.COLO4_07018 Corchorus olitorius HOM05D004484 ORTHO05D005370 1.3e-195 687.2 536 62.7
COL.COLO4_12548 Corchorus olitorius HOM05D004484 ORTHO05D005370 5.9e-188 661.8 707 50.9
Potri.002G148200 Populus trichocarpa HOM05D004484 ORTHO05D005370 1.1e-183 647.5 490 65.5
unitig_749.g13780 Utricularia gibba HOM05D004484 ORTHO05D005370 6.3e-182 641.7 570 58.8
Hma1.2p1_0086F.1_g044880 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 4.2e-178 629.0 455 69.0
Pp3c22_11100 Physcomitrium patens HOM05D004484 ORTHO05D005370 1.8e-176 623.6 688 46.7
Lj9C569T11 Lonicera japonica HOM05D004484 ORTHO05D005370 2.2e-174 616.7 467 65.7
SMO367G0514 Selaginella moellendorffii HOM05D004484 ORTHO05D005370 3.8e-171 605.9 687 47.2
Thhalv10011351m.g Eutrema salsugineum HOM05D004484 ORTHO05D005370 2.5e-170 603.2 645 48.8
CDE04G3156 Ceratophyllum demersum HOM05D004484 ORTHO05D005370 5.5e-170 602.1 673 48.4
ATR0049G077 Amborella trichopoda HOM05D004484 ORTHO05D005370 6.3e-166 588.6 460 61.1
Aa31LG10G5650 Aethionema arabicum HOM05D004484 ORTHO05D005370 2.2e-163 580.1 582 52.4
PGR119G1536 Punica granatum HOM05D004484 ORTHO05D005370 3.5e-156 556.2 511 54.0
Mapoly0129s0012 Marchantia polymorpha HOM05D004484 ORTHO05D005370 2.8e-153 546.6 629 45.9
RcHm_v2.0_Chr1g0350581 Rosa chinensis HOM05D004484 ORTHO05D005370 8.3e-150 535.0 378 66.7
AagrBONN_evm.TU.Sc2ySwM_368.3373 Anthoceros agrestis HOM05D004484 ORTHO05D005370 2.0e-143 513.8 694 39.8
RcHm_v2.0_Chr1g0350571 Rosa chinensis HOM05D004484 ORTHO05D005370 7.1e-109 399.1 294 67.3
CBR_g30081 Chara braunii HOM05D004484 ORTHO05D005370 7.9e-108 395.6 637 36.4
SHI38996 Sapria himalayana HOM05D004484 ORTHO05D005370 2.4e-80 304.3 212 66.5
SHI38095 Sapria himalayana HOM05D004484 ORTHO05D005370 6.3e-73 279.6 191 68.1
arahy.Tifrunner.gnm1.ann1.47H85H Arachis hypogaea HOM05D004484 ORTHO05D005370 5.3e-72 276.6 338 48.2
Hma1.2p1_0701F.1_g205850 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 2.9e-70 270.8 264 56.4
Glyma.01G142851 Glycine max HOM05D004484 ORTHO05D005370 1.1e-69 268.9 164 84.8
SHI38094 Sapria himalayana HOM05D004484 ORTHO05D005370 3.5e-63 247.3 211 58.3
Glyma.06G243967 Glycine max HOM05D004484 ORTHO05D005370 1.9e-61 241.5 145 79.3
Glyma.17G005802 Glycine max HOM05D004484 ORTHO05D005370 2.1e-60 238.0 196 66.3
SEGI_20047 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 7.5e-50 203.0 221 47.1
QL08p052505 Quercus lobata HOM05D004484 ORTHO05D005370 6.3e-41 173.3 169 55.0
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 1.4e-40 172.2 255 40.4
MCO15G158 Micromonas commoda HOM05D004484 ORTHO05D005370 1.4e-40 172.2 546 28.2
SEGI_29754 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 2.8e-36 157.9 116 66.4
TPR.G22633 Trifolium pratense HOM05D004484 ORTHO05D005370 6.1e-36 156.8 93 80.6
SHI38995 Sapria himalayana HOM05D004484 ORTHO05D005370 8.0e-36 156.4 126 60.3
Hma1.2p1_0170F.1_g075250 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 3.7e-33 147.5 202 43.1
CAN.G594.7 Capsicum annuum HOM05D004484 ORTHO05D005370 5.4e-32 143.7 105 67.6
CAN.G205.22 Capsicum annuum HOM05D004484 ORTHO05D005370 2.5e-29 134.8 89 69.7
Glyma.06G243934 Glycine max HOM05D004484 ORTHO05D005370 2.1e-28 131.7 81 84.0
Glyma.06G244302 Glycine max HOM05D004484 ORTHO05D005370 1.0e-27 129.4 129 59.7
Os03g0856200 Oryza sativa ssp. japonica HOM05D004484 ORTHO05D005370 6.8e-27 126.7 93 63.4
Solyc01g091430.2 Solanum lycopersicum HOM05D004484 ORTHO05D005370 2.6e-26 124.8 98 64.3
Aa31LG10G5660 Aethionema arabicum HOM05D004484 ORTHO05D005370 2.9e-25 121.3 94 58.5
Eucgr.I00725 Eucalyptus grandis HOM05D004484 ORTHO05D005370 4.9e-25 120.6 96 63.5
CAN.G388.14 Capsicum annuum HOM05D004484 ORTHO05D005370 3.0e-22 111.3 73 65.8
SGA_v2.0_scaffold65G22170 Striga asiatica HOM05D004484 ORTHO05D005370 3.0e-22 111.3 202 35.1
CAN.G279.6 Capsicum annuum HOM05D004484 ORTHO05D005370 5.2e-19 100.5 72 66.7
Eucgr.E01421 Eucalyptus grandis HOM05D004484 ORTHO05D005370 2.6e-18 98.2 64 73.4
TPR.G9848 Trifolium pratense HOM05D000164 ORTHO05D000096 3.7e-17 94.4 55 81.8
Eucgr.L02075 Eucalyptus grandis HOM05D004484 ORTHO05D005370 1.1e-16 92.8 64 71.9
Solyc01g091440.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 6.0e-15 87.0 133 41.4
PRCOL_00002704 Prasinoderma coloniale HOM05D004484 ORTHO05D005370 5.6e-13 80.5 259 31.3
SGA_v2.0_scaffold10G05342 Striga asiatica HOM05D004484 ORTHO05D005370 8.9e-11 73.2 168 30.4
arahy.Tifrunner.gnm1.ann1.0F06NC Arachis hypogaea HOM05D004484 ORTHO05D005370 2.6e-10 71.6 48 66.7
SGA_v2.0_scaffold172G39032 Striga asiatica HOM05D004484 ORTHO05D005370 5.8e-10 70.5 168 29.2
SGA_v2.0_scaffold29G12247 Striga asiatica HOM05D004484 ORTHO05D005370 4.9e-09 67.4 188 29.8
Oeu032522.1 Olea europaea HOM05D004484 ORTHO05D005370 1.1e-08 66.2 63 54.0
CAN.G321.48 Capsicum annuum HOM05D001267 ORTHO05D002376 2.4e-08 65.1 104 37.5
Hma1.2p1_1470F.1_g285600 Hydrangea macrophylla HOM05D000467 ORTHO05D011800 2.3e-06 58.5 46 63.0


User provided reference genes

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