Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G8491 Papaver somniferum HOM05D003938 ORTHO05D004759 6.2e-137 490.7 238 100.0
PSO717G0129 Papaver somniferum HOM05D003938 ORTHO05D004759 5.7e-98 361.3 230 80.4
PSO675G9176 Papaver somniferum HOM05D003938 ORTHO05D004759 7.4e-98 360.9 230 80.4
GSVIVG01020281001 Vitis vinifera HOM05D003938 ORTHO05D004759 1.5e-82 310.1 227 67.4
Gohir.A05G003300 Gossypium hirsutum HOM05D003938 ORTHO05D004759 3.3e-82 308.9 227 68.7
Gorai.009G003300 Gossypium raimondii HOM05D003938 ORTHO05D004759 7.5e-82 307.8 227 68.3
CSS0000259 Camellia sinensis var. sinensis HOM05D003938 ORTHO05D004759 1.3e-81 307.0 228 67.1
TAR626G0088 Trochodendron aralioides HOM05D003938 ORTHO05D004759 1.1e-80 303.9 228 68.0
Dinv19621 Davidia involucrata HOM05D003938 ORTHO05D004759 2.4e-80 302.8 228 66.7
Duzib168G1061 Durio zibethinus HOM05D003938 ORTHO05D004759 5.3e-80 301.6 227 68.3
CSS0016392 Camellia sinensis var. sinensis HOM05D003938 ORTHO05D004759 7.0e-80 301.2 228 65.8
Potri.005G097500 Populus trichocarpa HOM05D003938 ORTHO05D004759 7.0e-80 301.2 227 66.5
Manes.06G173850 Manihot esculenta HOM05D003938 ORTHO05D004759 5.9e-79 298.1 228 68.0
Aqoxy3G04185_Aqoxy3G04186 Aquilegia oxysepala HOM05D003938 ORTHO05D004759 1.3e-78 297.0 227 67.4
CSS0019207 Camellia sinensis var. sinensis HOM05D003938 ORTHO05D004759 3.8e-78 295.4 219 67.6
Nn7g37935 Nelumbo nucifera HOM05D003938 ORTHO05D004759 3.8e-78 295.4 228 64.9
CANSAT80G1380 Cannabis sativa HOM05D003938 ORTHO05D004759 1.9e-77 293.1 228 65.4
Peaxi162Scf00452g00848 Petunia axillaris HOM05D003938 ORTHO05D004759 1.9e-77 293.1 226 67.7
MD05G1222400 Malus domestica HOM05D003938 ORTHO05D004759 3.2e-77 292.4 228 64.9
Prupe.4G137900 Prunus persica HOM05D003938 ORTHO05D004759 1.2e-76 290.4 226 64.2
TWI74G0164 Tripterygium wilfordii HOM05D003938 ORTHO05D004759 1.6e-76 290.0 228 64.0
Cc05_g16030 Coffea canephora HOM05D003938 ORTHO05D004759 3.6e-76 288.9 228 65.4
MD10G1204000 Malus domestica HOM05D003938 ORTHO05D004759 6.1e-76 288.1 228 64.5
PSO447G0031 Papaver somniferum HOM05D003938 ORTHO05D004759 8.0e-76 287.7 227 64.8
Sabra05G0079800 Salix brachista HOM05D003938 ORTHO05D004759 8.0e-76 287.7 243 62.6
PGR119G1566 Punica granatum HOM05D003938 ORTHO05D004759 2.3e-75 286.2 224 64.3
MSTRG.16112 Avicennia marina HOM05D003938 ORTHO05D004759 4.0e-75 285.4 227 65.6
Ciclev10004604m.g Citrus clementina HOM05D003938 ORTHO05D004759 4.0e-75 285.4 226 64.6
Glyma.19G004200 Glycine max HOM05D003938 ORTHO05D004759 5.2e-75 285.0 227 65.2
QL04p077115 Quercus lobata HOM05D003938 ORTHO05D004759 6.8e-75 284.6 226 65.5
Lj3g0013935 Lotus japonicus HOM05D003938 ORTHO05D004759 1.2e-74 283.9 227 65.6
Sed0018665 Sechium edule HOM05D003938 ORTHO05D004759 1.2e-74 283.9 228 64.5
Sopen07g034590 Solanum pennellii HOM05D003938 ORTHO05D004759 1.2e-74 283.9 228 66.2
CsaV3_7G022770 Cucumis sativus L. HOM05D003938 ORTHO05D004759 1.5e-74 283.5 228 64.5
Lalb_Chr01g0007211 Lupinus albus HOM05D003938 ORTHO05D004759 1.5e-74 283.5 227 64.3
Solyc07g066420.4 Solanum lycopersicum HOM05D003938 ORTHO05D004759 1.5e-74 283.5 228 66.2
Phvul.011G177175 Phaseolus vulgaris HOM05D003938 ORTHO05D004759 2.6e-74 282.7 225 64.9
AT1G53720 Arabidopsis thaliana HOM05D003938 ORTHO05D004759 4.4e-74 282.0 225 65.3
Glyma.15G213200 Glycine max HOM05D003938 ORTHO05D004759 5.7e-74 281.6 227 64.3
Actinidia07348 Actinidia chinensis HOM05D003938 ORTHO05D004759 7.5e-74 281.2 231 63.6
Migut.M01560 Erythranthe guttata HOM05D003938 ORTHO05D004759 1.3e-73 280.4 227 64.3
FAN21G1947 Fragaria x ananassa HOM05D003938 ORTHO05D004759 1.3e-73 280.4 226 63.3
AL1G62420 Arabidopsis lyrata HOM05D003938 ORTHO05D004759 1.7e-73 280.0 228 63.6
CAN.G943.34 Capsicum annuum HOM05D003938 ORTHO05D004759 1.7e-73 280.0 223 66.4
MELO3C012622.2 Cucumis melo HOM05D003938 ORTHO05D004759 2.2e-73 279.6 228 63.6
SGA_v2.0_scaffold7G03579 Striga asiatica HOM05D003938 ORTHO05D004759 2.2e-73 279.6 229 63.3
FAN25G2080 Fragaria x ananassa HOM05D003938 ORTHO05D004759 2.8e-73 279.3 226 62.8
Medtr8g442420 Medicago truncatula HOM05D003938 ORTHO05D004759 2.8e-73 279.3 228 64.5
Nitab4.5_0009317g0010 Nicotiana tabacum HOM05D003938 ORTHO05D004759 4.8e-73 278.5 223 65.9
Carub.0001s4300 Capsella rubella HOM05D003938 ORTHO05D004759 6.3e-73 278.1 228 62.3
FvH4_3g15530 Fragaria vesca HOM05D003938 ORTHO05D004759 6.3e-73 278.1 226 62.4
Nitab4.5_0001749g0120 Nicotiana tabacum HOM05D003938 ORTHO05D004759 6.3e-73 278.1 223 65.9
CDE01G0219 Ceratophyllum demersum HOM05D003938 ORTHO05D004759 1.1e-72 277.3 231 64.5
RcHm_v2.0_Chr5g0026161 Rosa chinensis HOM05D003938 ORTHO05D004759 1.1e-72 277.3 226 62.8
Thhalv10011414m.g Eutrema salsugineum HOM05D003938 ORTHO05D004759 1.4e-72 276.9 228 62.3
Sc09g0007280 Simmondsia chinensis HOM05D003938 ORTHO05D004759 1.4e-72 276.9 228 64.9
HanXRQChr05g0160881 Helianthus annuus HOM05D003938 ORTHO05D004759 1.8e-72 276.6 225 64.4
Aa31LG10G170 Aethionema arabicum HOM05D003938 ORTHO05D004759 2.4e-72 276.2 228 62.3
Lsat_1_v5_gn_7_71321 Lactuca sativa HOM05D003938 ORTHO05D004759 2.4e-72 276.2 233 64.4
CARHR044020 Cardamine hirsuta HOM05D003938 ORTHO05D004759 3.1e-72 275.8 228 62.7
TPR.G9407 Trifolium pratense HOM05D003938 ORTHO05D004759 4.1e-72 275.4 222 65.8
arahy.Tifrunner.gnm1.ann1.TD7I6F Arachis hypogaea HOM05D003938 ORTHO05D004759 5.4e-72 275.0 227 64.3
Eucgr.F01467 Eucalyptus grandis HOM05D003938 ORTHO05D004759 5.4e-72 275.0 228 62.3
arahy.Tifrunner.gnm1.ann1.KA488U Arachis hypogaea HOM05D003938 ORTHO05D004759 9.1e-72 274.2 226 64.6
BcaB04g16924 Brassica carinata HOM05D003938 ORTHO05D004759 1.2e-71 273.9 228 62.3
BolC3t21636H Brassica oleracea HOM05D003938 ORTHO05D008065 1.2e-71 273.9 228 62.3
FAN16G1651 Fragaria x ananassa HOM05D003938 ORTHO05D004759 1.2e-71 273.9 226 61.9
Thecc.09G180900 Theobroma cacao HOM05D003938 ORTHO05D004759 1.2e-71 273.9 282 54.3
A08p00110 Brassica napus HOM05D000173 ORTHO05D008065 1.6e-71 273.5 228 62.7
BraA08t32068Z Brassica rapa HOM05D003938 ORTHO05D008065 1.6e-71 273.5 228 62.7
TPR.G22448 Trifolium pratense HOM05D003938 ORTHO05D004759 1.6e-71 273.5 222 64.9
C03p93390 Brassica napus HOM05D003938 ORTHO05D008065 2.7e-71 272.7 228 62.3
Medtr6g084140 Medicago truncatula HOM05D003938 ORTHO05D004759 3.8e-70 268.9 223 64.1
AUR62037621 Chenopodium quinoa HOM05D003938 ORTHO05D004759 5.0e-70 268.5 228 63.6
THA.LOC104822756 Tarenaya hassleriana HOM05D003938 ORTHO05D004759 1.1e-69 267.3 229 62.4
AUR62040863 Chenopodium quinoa HOM05D003938 ORTHO05D004759 2.5e-69 266.2 227 63.4
Ca_12645_v3 Cicer arietinum L. HOM05D003938 ORTHO05D004759 5.5e-69 265.0 219 64.4
ECA240G3729 Erigeron canadensis HOM05D003938 ORTHO05D004759 1.6e-68 263.5 229 61.6
CSS0024659 Camellia sinensis var. sinensis HOM05D003938 ORTHO05D004759 8.0e-68 261.2 228 58.8
FAN11G2591 Fragaria x ananassa HOM05D003938 ORTHO05D004759 1.4e-67 260.4 252 55.6
unitig_26.g10081 Utricularia gibba HOM05D003938 ORTHO05D004759 1.4e-67 260.4 228 60.5
ATR0763G204 Amborella trichopoda HOM05D003938 ORTHO05D004759 1.5e-66 256.9 226 58.8
Os06g0670500 Oryza sativa ssp. japonica HOM05D003938 ORTHO05D004759 2.6e-66 256.1 223 59.6
ClCG09G022610 Citrullus lanatus HOM05D003938 ORTHO05D004759 5.7e-66 255.0 296 50.7
EL10Ac2g03350 Beta vulgaris HOM05D003938 ORTHO05D004759 2.8e-65 252.7 281 52.3
Zm00001eb274050 Zea mays HOM05D003938 ORTHO05D004759 8.3e-65 251.1 223 57.8
CSS0007376 Camellia sinensis var. sinensis HOM05D003938 ORTHO05D004759 1.8e-64 250.0 228 58.3
Psat4g174120 Pisum sativum HOM05D003938 ORTHO05D004759 3.1e-64 249.2 212 63.2
CiPaw.01G119900 Carya illinoinensis HOM05D003938 ORTHO05D004759 7.8e-63 244.6 188 67.6
Gohir.D05G003701 Gossypium hirsutum HOM05D003938 ORTHO05D004759 1.5e-61 240.4 185 68.6
HPP92_008859 Vanilla planifolia HOM05D003938 ORTHO05D004759 5.6e-61 238.4 220 56.8
HPP92_008853 Vanilla planifolia HOM05D003938 ORTHO05D004759 1.2e-60 237.3 220 56.4
AagrBONN_evm.TU.Sc2ySwM_368.1871 Anthoceros agrestis HOM05D003938 ORTHO05D004759 9.8e-58 227.6 236 52.1
Pp3c1_5600 Physcomitrium patens HOM05D003938 ORTHO05D004759 2.9e-57 226.1 236 53.0
Mapoly0010s0175 Marchantia polymorpha HOM05D003938 ORTHO05D004759 1.9e-56 223.4 238 50.0
Sp1g38950 Schrenkiella parvula HOM05D003938 ORTHO05D004759 1.9e-56 223.4 186 63.4
Lj8A187T28 Lonicera japonica HOM05D003938 ORTHO05D004759 7.8e-55 218.0 185 62.2
Carub.0008s0543 Capsella rubella HOM05D003938 ORTHO05D004759 9.2e-48 194.5 187 56.7
vmacro11660 Vaccinium macrocarpon HOM05D003938 ORTHO05D004759 2.7e-47 193.0 228 48.2
SMO351G0536 Selaginella moellendorffii HOM05D003938 ORTHO05D004759 2.5e-45 186.4 181 53.6
Solyc12g049430.1 Solanum lycopersicum HOM05D003938 ORTHO05D004759 7.3e-45 184.9 195 54.9
Sopen12g023920 Solanum pennellii HOM05D003938 ORTHO05D004759 9.5e-45 184.5 197 54.3
Sopen02g012840 Solanum pennellii HOM05D003938 ORTHO05D004759 1.6e-44 183.7 184 56.0
Atru.chr1.190 Acer truncatum HOM05D003938 ORTHO05D004759 1.8e-43 180.3 181 56.4
Lj2g0001970 Lotus japonicus HOM05D003938 ORTHO05D004759 8.9e-43 177.9 124 71.8
PGSC0003DMG400004370 Solanum tuberosum HOM05D003938 ORTHO05D004759 1.5e-42 177.2 191 53.9
Solyc12g038120.3 Solanum lycopersicum HOM05D003938 ORTHO05D004759 4.4e-42 175.6 183 53.6
Sopen12g031080 Solanum pennellii HOM05D003938 ORTHO05D004759 4.4e-42 175.6 227 48.0
Cre11.g479850 Chlamydomonas reinhardtii HOM05D003938 ORTHO05D004759 5.4e-40 168.7 172 51.7
DCAR_013743 Daucus carota HOM05D003938 ORTHO05D004759 6.0e-39 165.2 110 75.5
Haze_07842 Corylus avellana HOM05D003938 ORTHO05D004759 1.3e-38 164.1 109 77.1
Nitab4.5_0004242g0030 Nicotiana tabacum HOM05D003938 ORTHO05D004759 6.6e-38 161.8 165 56.4
Ciclev10007155m.g Citrus clementina HOM05D003938 ORTHO05D004759 3.3e-37 159.5 169 53.3
EL10Ac6g14407 Beta vulgaris HOM05D003938 ORTHO05D004759 7.3e-37 158.3 181 52.5
EL10Ac6g14412 Beta vulgaris HOM05D003938 ORTHO05D004759 7.3e-37 158.3 148 58.1
VMungo1127G1769 Vigna mungo HOM05D003938 ORTHO05D004759 1.6e-36 157.1 107 75.7
PGSC0003DMG400026878 Solanum tuberosum HOM05D003938 ORTHO05D004759 4.7e-36 155.6 196 49.0
AUR62039463 Chenopodium quinoa HOM05D003938 ORTHO05D004759 3.4e-34 149.4 169 48.5
Aqoxy7G03516 Aquilegia oxysepala HOM05D003938 ORTHO05D004759 1.3e-33 147.5 133 62.4
Haze_26935 Corylus avellana HOM05D003938 ORTHO05D004759 4.9e-33 145.6 170 48.2
ECA248G1281 Erigeron canadensis HOM05D003938 ORTHO05D004759 8.4e-33 144.8 155 54.2
MCO01G120 Micromonas commoda HOM05D003938 ORTHO05D004759 1.9e-32 143.7 184 46.7
THA.LOC104822789 Tarenaya hassleriana HOM05D003938 ORTHO05D004759 2.1e-31 140.2 97 72.2
Cpa.g.sc331.3 Carica papaya HOM05D003938 ORTHO05D004759 2.7e-31 139.8 98 69.4
Cfa023095 Carpinus fangiana HOM05D003938 ORTHO05D004759 2.5e-29 133.3 175 44.0
VMungo1127G1443 Vigna mungo HOM05D003938 ORTHO05D004759 4.3e-29 132.5 117 58.1
Os06g0670400 Oryza sativa ssp. japonica HOM05D003938 ORTHO05D004759 8.1e-28 128.3 223 36.3
Haze_07837 Corylus avellana HOM05D002071 ORTHO05D004759 1.2e-26 124.4 114 51.8
SMO353G0235 Selaginella moellendorffii HOM05D003938 ORTHO05D004759 1.7e-25 120.6 169 42.6
PGSC0003DMG400004369 Solanum tuberosum HOM05D003938 ORTHO05D004759 1.7e-25 120.6 124 55.6
PGSC0003DMG400017036 Solanum tuberosum HOM05D003938 ORTHO05D004759 4.9e-25 119.0 125 54.4
PGSC0003DMG400022237 Solanum tuberosum HOM05D003938 ORTHO05D004759 1.4e-24 117.5 78 74.4
Sopen12g017720 Solanum pennellii HOM05D000006 ORTHO05D000001 4.2e-24 115.9 116 54.3
DCAR_013742 Daucus carota HOM05D003938 ORTHO05D004759 1.2e-23 114.4 108 54.6
Potri.007G067000 Populus trichocarpa HOM05D003938 ORTHO05D004759 7.8e-23 111.7 115 53.9
CBR_g2919 Chara braunii HOM05D003938 ORTHO05D004759 1.3e-22 110.9 89 61.8
Eucgr.F01469 Eucalyptus grandis HOM05D003938 ORTHO05D004759 1.7e-22 110.5 79 62.0
AL1G53090 Arabidopsis lyrata HOM05D000070 ORTHO05D004759 2.3e-22 110.2 172 39.5
Sopen12g023950 Solanum pennellii HOM05D003938 ORTHO05D004759 5.1e-22 109.0 111 54.1
PRCOL_00005663 Prasinoderma coloniale HOM05D000144 ORTHO05D004759 6.6e-22 108.6 117 52.1
SHI21602 Sapria himalayana HOM05D003938 ORTHO05D004759 5.6e-21 105.5 73 64.4
SHI21597 Sapria himalayana HOM05D003938 ORTHO05D004759 9.6e-21 104.8 102 53.9
Solyc02g061800.2 Solanum lycopersicum HOM05D003938 ORTHO05D004759 2.1e-20 103.6 175 39.4
AagrBONN_evm.TU.Sc2ySwM_344.2630 Anthoceros agrestis HOM05D003938 ORTHO05D004759 4.8e-20 102.4 112 54.5
TPR.G24716 Trifolium pratense HOM05D003938 ORTHO05D004759 1.5e-18 97.4 106 52.8
MBI01_g43617_MAGBIO Magnolia biondii HOM05D003938 ORTHO05D004759 8.4e-17 91.7 73 63.0
SEGI_12892 Sequoiadendron giganteum HOM05D003938 ORTHO05D004759 5.4e-16 89.0 73 57.5
Solyc12g038020.3 Solanum lycopersicum HOM05D003938 ORTHO05D004759 1.9e-13 80.5 161 37.3
CBR_g2917 Chara braunii HOM05D003938 ORTHO05D004759 3.3e-13 79.7 93 48.4
Sp1g41710 Schrenkiella parvula HOM05D003938 ORTHO05D039178 1.7e-09 67.4 39 76.9
Haze_10874 Corylus avellana HOM05D003938 ORTHO05D004759 2.2e-09 67.0 43 72.1
Solyc09g018480.1 Solanum lycopersicum HOM05D003938 ORTHO05D004759 2.2e-09 67.0 107 37.4
AL1G64340 Arabidopsis lyrata HOM05D003938 ORTHO05D004759 8.4e-09 65.1 43 69.8
Cpa.g.sc331.2 Carica papaya HOM05D003938 ORTHO05D004759 7.1e-08 62.0 44 61.4
Oeu003830.4 Olea europaea HOM05D003938 ORTHO05D004759 2.1e-07 60.5 34 82.4
FAN08G3613 Fragaria x ananassa HOM05D020646 ORTHO05D015666 7.9e-07 58.5 81 40.7
FAN18G2416 Fragaria x ananassa HOM05D020646 ORTHO05D015666 2.3e-06 57.0 43 58.1
FvH4_2g09020 Fragaria vesca HOM05D020646 ORTHO05D015666 5.1e-06 55.8 43 58.1
Phvul.008G006500 Phaseolus vulgaris HOM05D004170 ORTHO05D005976 5.1e-06 55.8 96 35.4
SEGI_40305 Sequoiadendron giganteum HOM05D003938 ORTHO05D004759 5.1e-06 55.8 34 73.5


User provided reference genes

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