Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402024850 Solanum tuberosum HOM05D001605 ORTHO05D003014 1.5e-130 469.5 246 100.0
Solyc04g064700.4 Solanum lycopersicum HOM05D001605 ORTHO05D003014 5.0e-105 384.8 217 96.3
Sopen04g026660 Solanum pennellii HOM05D001605 ORTHO05D003014 5.0e-105 384.8 217 96.3
Nitab4.5_0000445g0150 Nicotiana tabacum HOM05D001605 ORTHO05D003014 6.1e-103 377.9 217 93.5
Peaxi162Scf00263g00122 Petunia axillaris HOM05D001605 ORTHO05D003014 5.3e-99 364.8 217 89.4
Nitab4.5_0009413g0010 Nicotiana tabacum HOM05D001605 ORTHO05D003014 2.0e-98 362.8 211 92.4
Nitab4.5_0010232g0010 Nicotiana tabacum HOM05D001605 ORTHO05D003014 2.3e-86 322.8 208 86.1
Lj4C691T3 Lonicera japonica HOM05D001605 ORTHO05D003014 6.7e-86 321.2 227 75.3
Dinv25801 Davidia involucrata HOM05D001605 ORTHO05D003014 1.7e-81 306.6 224 73.2
DCAR_010233 Daucus carota HOM05D001605 ORTHO05D003014 1.5e-80 303.5 214 75.2
HanXRQChr04g0125191 Helianthus annuus HOM05D001605 ORTHO05D003014 1.5e-80 303.5 215 73.5
Lsat_1_v5_gn_3_132801 Lactuca sativa HOM05D001605 ORTHO05D003014 8.0e-79 297.7 231 72.3
ClCG08G006430 Citrullus lanatus HOM05D001605 ORTHO05D003014 1.8e-78 296.6 224 71.4
CsaV3_6G031000 Cucumis sativus L. HOM05D001605 ORTHO05D003014 1.8e-78 296.6 224 71.4
MSTRG.1376 Avicennia marina HOM05D001605 ORTHO05D003014 4.8e-76 288.5 227 71.8
Hma1.2p1_0107F.1_g051400 Hydrangea macrophylla HOM05D001605 ORTHO05D003014 8.3e-76 287.7 219 72.1
Hund26733 Selenicereus undatus HOM05D001605 ORTHO05D003014 8.3e-76 287.7 228 68.0
Sed0025239 Sechium edule HOM05D001605 ORTHO05D003014 1.4e-75 287.0 228 71.1
unitig_748.g7696 Utricularia gibba HOM05D001605 ORTHO05D003014 1.4e-75 287.0 222 68.9
Ah.05g167510 Amaranthus hybridus HOM05D001605 ORTHO05D003014 4.1e-75 285.4 225 71.6
Manes.18G086700 Manihot esculenta HOM05D001605 ORTHO05D003014 4.1e-75 285.4 224 70.5
MD05G1013100 Malus domestica HOM05D001605 ORTHO05D003014 7.0e-75 284.6 227 69.6
ECA247G0063 Erigeron canadensis HOM05D001605 ORTHO05D003014 3.5e-74 282.3 197 75.1
MBI04_g13672_MAGBIO Magnolia biondii HOM05D001605 ORTHO05D003014 5.9e-74 281.6 226 65.0
MD10G1013600 Malus domestica HOM05D001605 ORTHO05D003014 1.3e-73 280.4 227 69.6
SalBow7G2351 Salvia bowleyana HOM05D001605 ORTHO05D003014 2.2e-73 279.6 187 80.2
TWI34G1926 Tripterygium wilfordii HOM05D001605 ORTHO05D003014 2.2e-73 279.6 217 71.0
Cpa.g.sc188.8 Carica papaya HOM05D001605 ORTHO05D003014 3.8e-73 278.9 224 66.5
Cfa018371 Carpinus fangiana HOM05D001605 ORTHO05D003014 5.0e-73 278.5 215 73.5
Haze_17697 Corylus avellana HOM05D001605 ORTHO05D003014 5.0e-73 278.5 215 73.5
SGA_v2.0_scaffold48G17942 Striga asiatica HOM05D001605 ORTHO05D003014 5.0e-73 278.5 224 68.3
Sed0025518 Sechium edule HOM05D001605 ORTHO05D003014 6.5e-73 278.1 203 74.9
Nn5g28614 Nelumbo nucifera HOM05D001605 ORTHO05D003014 8.5e-73 277.7 228 68.9
Prupe.8G018000 Prunus persica HOM05D001605 ORTHO05D003014 1.9e-72 276.6 223 69.1
TWI60G0151 Tripterygium wilfordii HOM05D001605 ORTHO05D003014 5.5e-72 275.0 215 73.5
Oeu001561.1 Olea europaea HOM05D001605 ORTHO05D003014 7.2e-72 274.6 217 68.7
PSO063G1730 Papaver somniferum HOM05D001605 ORTHO05D003014 9.4e-72 274.2 234 62.4
PSO782G0565 Papaver somniferum HOM05D001605 ORTHO05D003014 9.4e-72 274.2 234 62.4
RcHm_v2.0_Chr6g0277331 Rosa chinensis HOM05D001605 ORTHO05D003014 9.4e-72 274.2 227 67.4
FAN15G1258 Fragaria x ananassa HOM05D001605 ORTHO05D003014 1.6e-71 273.5 227 67.0
TAR625G1035 Trochodendron aralioides HOM05D001605 ORTHO05D003014 1.6e-71 273.5 219 70.8
Cc10_g12970 Coffea canephora HOM05D001605 ORTHO05D003014 2.1e-71 273.1 215 71.2
DCAR_001109 Daucus carota HOM05D001605 ORTHO05D003014 2.1e-71 273.1 214 68.7
TAR381G0699 Trochodendron aralioides HOM05D001605 ORTHO05D003014 2.1e-71 273.1 215 69.8
Gohir.A02G067000 Gossypium hirsutum HOM05D001605 ORTHO05D003014 2.7e-71 272.7 213 70.4
Lalb_Chr23g0271331 Lupinus albus HOM05D001605 ORTHO05D003014 2.7e-71 272.7 227 69.2
FvH4_2g14770 Fragaria vesca HOM05D001605 ORTHO05D003014 3.6e-71 272.3 227 66.5
FAN20G0370 Fragaria x ananassa HOM05D001605 ORTHO05D003014 3.6e-71 272.3 227 66.5
FAN24G3135 Fragaria x ananassa HOM05D001605 ORTHO05D003014 3.6e-71 272.3 227 66.5
Thecc.08G143700 Theobroma cacao HOM05D001605 ORTHO05D003014 6.1e-71 271.6 214 71.0
Psat5g080840 Pisum sativum HOM05D001605 ORTHO05D003014 8.0e-71 271.2 224 68.3
Potri.004G162500 Populus trichocarpa HOM05D001605 ORTHO05D003014 8.0e-71 271.2 224 65.2
Dinv41129 Davidia involucrata HOM05D001605 ORTHO05D003014 1.0e-70 270.8 181 79.0
ATR0665G314 Amborella trichopoda HOM05D001605 ORTHO05D003014 2.3e-70 269.6 201 73.6
Lalb_Chr08g0240791 Lupinus albus HOM05D001605 ORTHO05D003014 2.3e-70 269.6 214 70.6
Migut.C01045 Erythranthe guttata HOM05D001605 ORTHO05D003014 4.0e-70 268.9 227 65.2
Lalb_Chr11g0066411 Lupinus albus HOM05D001605 ORTHO05D003014 5.2e-70 268.5 217 70.5
Gohir.A05G269500 Gossypium hirsutum HOM05D001605 ORTHO05D003014 6.8e-70 268.1 214 71.5
Gohir.D05G271600 Gossypium hirsutum HOM05D001605 ORTHO05D003014 6.8e-70 268.1 214 71.5
Gorai.009G252200 Gossypium raimondii HOM05D001605 ORTHO05D003014 6.8e-70 268.1 214 69.6
Duzib116G0915 Durio zibethinus HOM05D001605 ORTHO05D003014 1.5e-69 266.9 214 70.1
CDE07G1070 Ceratophyllum demersum HOM05D001605 ORTHO05D003014 4.4e-69 265.4 216 66.2
Gorai.005G082600 Gossypium raimondii HOM05D001605 ORTHO05D003014 4.4e-69 265.4 234 63.7
Duzib041G0436 Durio zibethinus HOM05D001605 ORTHO05D003014 7.5e-69 264.6 214 69.6
Manes.02G174700 Manihot esculenta HOM05D001605 ORTHO05D003014 9.8e-69 264.2 217 68.7
Atru.chr13.1705 Acer truncatum HOM05D001605 ORTHO05D003014 1.3e-68 263.8 217 69.6
Gohir.D02G073200 Gossypium hirsutum HOM05D001605 ORTHO05D003014 1.3e-68 263.8 213 67.6
Gorai.009G284500 Gossypium raimondii HOM05D001605 ORTHO05D003014 1.7e-68 263.5 215 71.2
Aqoxy3G04296 Aquilegia oxysepala HOM05D001605 ORTHO05D003014 4.9e-68 261.9 214 68.2
Gohir.D05G242900 Gossypium hirsutum HOM05D001605 ORTHO05D003014 4.9e-68 261.9 214 68.7
CANSAT25G3051 Cannabis sativa HOM05D001605 ORTHO05D003014 1.8e-67 260.0 217 64.5
CAN.G1045.24 Capsicum annuum HOM05D001605 ORTHO05D003014 7.0e-67 258.1 215 70.7
Potri.009G124200 Populus trichocarpa HOM05D001605 ORTHO05D003014 4.5e-66 255.4 215 67.4
Lsat_1_v5_gn_2_107160 Lactuca sativa HOM05D001605 ORTHO05D003014 1.0e-65 254.2 222 65.8
GSVIVG01010022001 Vitis vinifera HOM05D001605 ORTHO05D003014 1.7e-65 253.4 200 70.0
arahy.Tifrunner.gnm1.ann1.SUKE0C Arachis hypogaea HOM05D001605 ORTHO05D003014 3.8e-65 252.3 214 66.8
arahy.Tifrunner.gnm1.ann1.XKFQ8F Arachis hypogaea HOM05D001605 ORTHO05D003014 3.8e-65 252.3 214 66.8
THA.LOC104798874 Tarenaya hassleriana HOM05D001605 ORTHO05D003014 5.0e-65 251.9 212 62.3
CiPaw.16G018200 Carya illinoinensis HOM05D001605 ORTHO05D003014 6.6e-65 251.5 214 68.2
QL02p025489 Quercus lobata HOM05D001605 ORTHO05D003014 8.6e-65 251.1 185 73.5
Carub.0006s2691 Capsella rubella HOM05D001605 ORTHO05D003014 1.1e-64 250.8 223 59.6
Glyma.04G240900 Glycine max HOM05D001605 ORTHO05D003014 1.5e-64 250.4 215 68.4
Lsat_1_v5_gn_7_47540 Lactuca sativa HOM05D001605 ORTHO05D003014 1.5e-64 250.4 226 64.2
Rhsim06G0090800 Rhododendron simsii HOM05D001605 ORTHO05D003014 1.5e-64 250.4 228 64.5
vmacro21127 Vaccinium macrocarpon HOM05D001605 ORTHO05D003014 1.9e-64 250.0 188 73.9
CARHR259450 Cardamine hirsuta HOM05D001605 ORTHO05D003014 2.5e-64 249.6 213 62.0
Phvul.009G134600 Phaseolus vulgaris HOM05D001605 ORTHO05D003014 4.3e-64 248.8 218 68.3
Lj1g0017948 Lotus japonicus HOM05D001605 ORTHO05D003014 9.5e-64 247.7 214 66.4
VMungo1309G2477 Vigna mungo HOM05D001605 ORTHO05D003014 1.2e-63 247.3 215 68.4
Ciclev10000121m.g Citrus clementina HOM05D001605 ORTHO05D003014 1.6e-63 246.9 214 66.4
Actinidia16593 Actinidia chinensis HOM05D001605 ORTHO05D003014 2.1e-63 246.5 214 66.4
vmacro01512 Vaccinium macrocarpon HOM05D001605 ORTHO05D003014 6.1e-63 245.0 197 68.5
COL.COLO4_08860 Corchorus olitorius HOM05D001605 ORTHO05D003014 1.8e-62 243.4 185 74.1
Sabra09G0095400 Salix brachista HOM05D001605 ORTHO05D003014 2.3e-62 243.0 238 60.9
Glyma.06G122500 Glycine max HOM05D001605 ORTHO05D003014 6.8e-62 241.5 186 74.2
AUR62026789 Chenopodium quinoa HOM05D001605 ORTHO05D003014 1.5e-61 240.4 232 60.8
AUR62013483 Chenopodium quinoa HOM05D001605 ORTHO05D003014 2.6e-61 239.6 232 60.8
Ca_16648_v3 Cicer arietinum L. HOM05D001605 ORTHO05D003014 4.4e-61 238.8 185 73.0
Os06g0208300 Oryza sativa ssp. japonica HOM05D001605 ORTHO05D003014 2.9e-60 236.1 214 65.0
HPP92_021877 Vanilla planifolia HOM05D001605 ORTHO05D003014 4.9e-60 235.3 224 59.8
Aa31LG9G14140 Aethionema arabicum HOM05D001605 ORTHO05D003014 6.4e-60 235.0 213 58.2
MELO3C008414.2 Cucumis melo HOM05D001605 ORTHO05D003014 9.2e-59 231.1 224 55.4
AT4G08350 Arabidopsis thaliana HOM05D001605 ORTHO05D003014 3.5e-58 229.2 213 58.7
PGR042G1363 Punica granatum HOM05D001605 ORTHO05D003014 5.9e-58 228.4 214 58.4
AL6G42110 Arabidopsis lyrata HOM05D001605 ORTHO05D003014 7.8e-58 228.0 213 58.7
EL10Ac1g01470 Beta vulgaris HOM05D001605 ORTHO05D003014 1.3e-57 227.3 252 56.3
Rhsim12G0009500 Rhododendron simsii HOM05D001605 ORTHO05D003014 1.7e-57 226.9 230 60.9
Eucgr.F02745 Eucalyptus grandis HOM05D001605 ORTHO05D003014 5.0e-57 225.3 225 56.9
Medtr1g023870 Medicago truncatula HOM05D001605 ORTHO05D003014 1.5e-56 223.8 229 58.5
Actinidia15162 Actinidia chinensis HOM05D001605 ORTHO05D003014 3.3e-56 222.6 234 54.3
THA.LOC104806843 Tarenaya hassleriana HOM05D001605 ORTHO05D003014 3.3e-56 222.6 218 55.5
A03p27980 Brassica napus HOM05D001605 ORTHO05D003014 3.6e-55 219.2 213 55.4
BraA03t12015Z Brassica rapa HOM05D001605 ORTHO05D003014 3.6e-55 219.2 213 55.4
BcaC01g04775 Brassica carinata HOM05D001605 ORTHO05D003014 4.7e-55 218.8 213 55.4
C03p33860 Brassica napus HOM05D001605 ORTHO05D003014 4.7e-55 218.8 213 55.4
BolC3t15701H Brassica oleracea HOM05D001605 ORTHO05D003014 4.7e-55 218.8 213 55.4
Thhalv10028382m.g Eutrema salsugineum HOM05D001605 ORTHO05D003014 4.7e-55 218.8 189 59.3
Medtr3g089910 Medicago truncatula HOM05D001605 ORTHO05D003014 4.7e-55 218.8 216 60.2
Sp6g09600 Schrenkiella parvula HOM05D001605 ORTHO05D003014 1.0e-54 217.6 213 55.4
CSS0028371 Camellia sinensis var. sinensis HOM05D001605 ORTHO05D003014 3.1e-54 216.1 169 73.4
BcaB01g02866 Brassica carinata HOM05D001605 ORTHO05D003014 1.5e-53 213.8 213 54.9
SEGI_21526 Sequoiadendron giganteum HOM05D001605 ORTHO05D003014 3.4e-53 212.6 216 61.1
BcaB01g01341 Brassica carinata HOM05D001605 ORTHO05D003014 4.4e-53 212.2 213 54.5
A09p30220 Brassica napus HOM05D001605 ORTHO05D003014 2.2e-52 209.9 184 59.2
ECA240G4004 Erigeron canadensis HOM05D001605 ORTHO05D003014 7.0e-51 204.9 227 52.9
BcaC04g20905 Brassica carinata HOM05D001605 ORTHO05D003014 2.0e-50 203.4 184 57.6
C09p38130 Brassica napus HOM05D001605 ORTHO05D003014 2.0e-50 203.4 184 57.6
BolC9t56650H Brassica oleracea HOM05D001605 ORTHO05D003014 2.0e-50 203.4 184 57.6
Gohir.A05G241600 Gossypium hirsutum HOM05D001605 ORTHO05D003014 6.0e-50 201.8 180 65.6
Pp3c16_360 Physcomitrium patens HOM05D001605 ORTHO05D003014 1.0e-49 201.1 222 54.5
TPR.G819 Trifolium pratense HOM05D001605 ORTHO05D003014 5.0e-49 198.7 154 67.5
Zm00001eb373500 Zea mays HOM05D001605 ORTHO05D003014 5.0e-49 198.7 214 57.0
Pp3c25_8110 Physcomitrium patens HOM05D001605 ORTHO05D003014 4.3e-48 195.7 214 55.1
BcaB01g03900 Brassica carinata HOM05D001605 ORTHO05D003014 5.2e-46 188.7 228 50.0
A03p19040 Brassica napus HOM05D001605 ORTHO05D003014 2.0e-45 186.8 217 50.2
CDE06G0467 Ceratophyllum demersum HOM05D001605 ORTHO05D003014 2.4e-43 179.9 172 58.1
AagrBONN_evm.TU.Sc2ySwM_369.275 Anthoceros agrestis HOM05D001605 ORTHO05D003014 2.3e-41 173.3 218 51.8
arahy.Tifrunner.gnm1.ann1.E7CKP3 Arachis hypogaea HOM05D001605 ORTHO05D003014 5.6e-40 168.7 128 65.6
Mapoly0027s0102 Marchantia polymorpha HOM05D001605 ORTHO05D003014 5.6e-40 168.7 228 48.7
AL4G30140 Arabidopsis lyrata HOM05D001605 ORTHO05D003014 7.3e-40 168.3 210 49.5
Sc23g0005020 Simmondsia chinensis HOM05D001605 ORTHO05D003014 6.2e-39 165.2 163 58.9
BraA03t11162Z Brassica rapa HOM05D001605 ORTHO05D003014 4.4e-37 159.1 223 43.9
AT2G34210 Arabidopsis thaliana HOM05D001605 ORTHO05D003014 1.3e-36 157.5 224 45.1
Carub.0004s1584 Capsella rubella HOM05D001605 ORTHO05D003014 1.3e-36 157.5 222 45.0
QL07p038796 Quercus lobata HOM05D001605 ORTHO05D003014 2.2e-36 156.8 123 61.8
QL07p039046 Quercus lobata HOM05D001605 ORTHO05D003014 2.2e-36 156.8 123 61.8
BcaC01g05804 Brassica carinata HOM05D001605 ORTHO05D003014 3.8e-36 156.0 225 44.9
C03p22230 Brassica napus HOM05D001605 ORTHO05D003014 3.8e-36 156.0 225 44.9
BolC3t14607H Brassica oleracea HOM05D001605 ORTHO05D003014 3.8e-36 156.0 225 44.9
CBR_g27949 Chara braunii HOM05D001605 ORTHO05D003014 1.0e-33 147.9 220 42.7
SMO137G0201 Selaginella moellendorffii HOM05D001605 ORTHO05D003014 5.1e-33 145.6 215 48.8
SMO162G0003 Selaginella moellendorffii HOM05D001605 ORTHO05D003014 6.6e-33 145.2 218 48.2
Sp4g16520 Schrenkiella parvula HOM05D001605 ORTHO05D003014 2.5e-32 143.3 116 56.9
BraA09t38589Z Brassica rapa HOM05D001605 ORTHO05D003014 4.0e-30 136.0 111 56.8
arahy.Tifrunner.gnm1.ann1.0IUR8P Arachis hypogaea HOM05D001605 ORTHO05D003014 3.9e-25 119.4 109 56.0
arahy.Tifrunner.gnm1.ann1.XYB1GT Arachis hypogaea HOM05D001605 ORTHO05D003014 3.9e-25 119.4 109 56.0
Sc26g0002740 Simmondsia chinensis HOM05D001605 ORTHO05D003014 2.5e-24 116.7 113 67.3
QL12p037358 Quercus lobata HOM05D001605 ORTHO05D003014 5.3e-22 109.0 95 56.8
AT4G08360 Arabidopsis thaliana HOM05D001605 ORTHO05D003014 6.9e-22 108.6 102 54.9
TPR.G18764 Trifolium pratense HOM05D001605 ORTHO05D003014 6.4e-20 102.1 127 51.2
Hma1.2p1_1530F.1_g289170 Hydrangea macrophylla HOM05D001605 ORTHO05D003014 2.3e-17 93.6 113 44.2
Mapoly0084s0047 Marchantia polymorpha HOM05D001605 ORTHO05D003014 1.1e-11 74.7 105 34.3
Nitab4.5_0008996g0020 Nicotiana tabacum HOM05D001605 ORTHO05D003014 4.2e-11 72.8 112 42.9
Cre01.g031050 Chlamydomonas reinhardtii HOM05D001605 ORTHO05D003014 3.1e-06 56.6 218 35.3


User provided reference genes

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