Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401017464 Solanum tuberosum HOM05D002182 ORTHO05D004671 2.1e-73 278.9 136 100.0
Solyc05g014750.2 Solanum lycopersicum HOM05D002182 ORTHO05D004671 4.2e-53 211.5 103 96.1
Sopen05g009910 Solanum pennellii HOM05D002182 ORTHO05D004671 7.1e-53 210.7 103 96.1
CAN.G163.2 Capsicum annuum HOM05D002182 ORTHO05D004671 6.0e-52 207.6 103 94.2
Nitab4.5_0000120g0170 Nicotiana tabacum HOM05D002182 ORTHO05D004671 2.1e-49 199.1 101 92.1
Nitab4.5_0001277g0020 Nicotiana tabacum HOM05D002182 ORTHO05D004671 2.1e-49 199.1 101 92.1
Peaxi162Scf00151g00610 Petunia axillaris HOM05D002182 ORTHO05D004671 1.1e-48 196.8 101 94.1
Cc07_g19240 Coffea canephora HOM05D002182 ORTHO05D004671 7.9e-44 180.6 101 81.2
Cc07_g20300 Coffea canephora HOM05D002182 ORTHO05D004671 2.3e-43 179.1 99 82.8
Actinidia20029 Actinidia chinensis HOM05D002182 ORTHO05D004671 3.9e-43 178.3 100 83.0
CSS0026830 Camellia sinensis var. sinensis HOM05D002182 ORTHO05D004671 6.7e-43 177.6 101 82.2
Migut.H00785 Erythranthe guttata HOM05D002182 ORTHO05D004671 6.7e-43 177.6 104 81.7
Dinv35485 Davidia involucrata HOM05D002182 ORTHO05D004671 1.1e-42 176.8 99 82.8
Migut.H00803 Erythranthe guttata HOM05D002182 ORTHO05D004671 1.9e-42 176.0 104 80.8
Ciclev10003112m.g Citrus clementina HOM05D002182 ORTHO05D004671 3.3e-42 175.3 104 78.8
HanXRQChr01g0016911 Helianthus annuus HOM05D002182 ORTHO05D004671 9.6e-42 173.7 101 79.2
Medtr3g096640 Medicago truncatula HOM05D002182 ORTHO05D004671 1.3e-41 173.3 103 78.6
Lalb_Chr11g0068591 Lupinus albus HOM05D002182 ORTHO05D004671 1.6e-41 172.9 103 78.6
CiPaw.04G079900 Carya illinoinensis HOM05D002182 ORTHO05D004671 2.8e-41 172.2 99 80.8
Gohir.A11G057650 Gossypium hirsutum HOM05D002182 ORTHO05D004671 4.8e-41 171.4 95 83.2
Lj4C830T7 Lonicera japonica HOM05D002182 ORTHO05D004671 4.8e-41 171.4 105 80.0
Gohir.D11G061900 Gossypium hirsutum HOM05D002182 ORTHO05D004671 8.1e-41 170.6 95 83.2
Atru.chr4.980 Acer truncatum HOM05D002182 ORTHO05D004671 1.1e-40 170.2 100 80.0
arahy.Tifrunner.gnm1.ann1.XVSB6Y Arachis hypogaea HOM05D002182 ORTHO05D004671 1.8e-40 169.5 103 76.7
Rhsim10G0124200 Rhododendron simsii HOM05D002182 ORTHO05D004671 1.8e-40 169.5 99 81.8
Gorai.007G066700 Gossypium raimondii HOM05D002182 ORTHO05D004671 2.4e-40 169.1 95 82.1
PGR102G1182 Punica granatum HOM05D002182 ORTHO05D004671 2.4e-40 169.1 100 79.0
SGA_v2.0_scaffold54G19590 Striga asiatica HOM05D002182 ORTHO05D004671 2.4e-40 169.1 104 78.8
Duzib264G0915 Durio zibethinus HOM05D002182 ORTHO05D004671 4.0e-40 168.3 95 82.1
Nn5g28440 Nelumbo nucifera HOM05D002182 ORTHO05D004671 4.0e-40 168.3 98 79.6
Ca_16971_v3 Cicer arietinum L. HOM05D002182 ORTHO05D004671 5.3e-40 167.9 102 77.5
Haze_25331 Corylus avellana HOM05D002182 ORTHO05D004671 9.0e-40 167.2 99 78.8
TPR.G33581 Trifolium pratense HOM05D002182 ORTHO05D004671 9.0e-40 167.2 102 78.4
vmacro12743 Vaccinium macrocarpon HOM05D002182 ORTHO05D004671 9.0e-40 167.2 95 81.1
COL.COLO4_35815 Corchorus olitorius HOM05D002182 ORTHO05D004671 1.5e-39 166.4 95 82.1
Thecc.01G137400 Theobroma cacao HOM05D002182 ORTHO05D004671 1.5e-39 166.4 95 80.0
CSS0041549 Camellia sinensis var. sinensis HOM05D002182 ORTHO05D004671 2.6e-39 165.6 111 73.9
Manes.13G078050 Manihot esculenta HOM05D002182 ORTHO05D004671 3.4e-39 165.2 96 78.1
Oeu050090.2 Olea europaea HOM05D002182 ORTHO05D004671 3.4e-39 165.2 100 80.0
ClCG10G017010 Citrullus lanatus HOM05D002182 ORTHO05D004671 4.5e-39 164.9 102 78.4
MBI07_g33104_MAGBIO Magnolia biondii HOM05D002182 ORTHO05D004671 7.6e-39 164.1 100 79.0
Phvul.009G154850 Phaseolus vulgaris HOM05D002182 ORTHO05D004671 7.6e-39 164.1 99 77.8
arahy.Tifrunner.gnm1.ann1.K5KUZ3 Arachis hypogaea HOM05D002182 ORTHO05D004671 1.3e-38 163.3 103 74.8
TAR376G0522 Trochodendron aralioides HOM05D002182 ORTHO05D004671 1.3e-38 163.3 99 77.8
VMungo1309G0220 Vigna mungo HOM05D002182 ORTHO05D004671 1.7e-38 162.9 99 77.8
AUR62000512 Chenopodium quinoa HOM05D002182 ORTHO05D004671 2.9e-38 162.2 99 78.8
AUR62006857 Chenopodium quinoa HOM05D002182 ORTHO05D004671 2.9e-38 162.2 99 78.8
EL10Ac4g09621 Beta vulgaris HOM05D002182 ORTHO05D004671 6.4e-38 161.0 97 80.4
CDE09G0651 Ceratophyllum demersum HOM05D002182 ORTHO05D004671 6.4e-38 161.0 102 75.5
Lsat_1_v5_gn_1_78841 Lactuca sativa HOM05D002182 ORTHO05D004671 8.4e-38 160.6 95 75.8
Sed0010212 Sechium edule HOM05D002182 ORTHO05D004671 8.4e-38 160.6 99 78.8
Glyma.06G155600 Glycine max HOM05D002182 ORTHO05D004671 1.1e-37 160.2 99 74.7
Psat5g060640 Pisum sativum HOM05D002182 ORTHO05D004671 1.4e-37 159.8 102 75.5
CsaV3_3G039390 Cucumis sativus L. HOM05D002182 ORTHO05D004671 1.9e-37 159.5 98 77.6
Lj1g0008046 Lotus japonicus HOM05D002182 ORTHO05D004671 3.2e-37 158.7 99 76.8
Hund21801 Selenicereus undatus HOM05D002182 ORTHO05D004671 4.2e-37 158.3 99 76.8
MELO3C009682.2 Cucumis melo HOM05D002182 ORTHO05D004671 5.5e-37 157.9 99 75.8
Ah.06g191020 Amaranthus hybridus HOM05D002182 ORTHO05D004671 7.1e-37 157.5 99 75.8
Eucgr.H05141 Eucalyptus grandis HOM05D002182 ORTHO05D004671 7.1e-37 157.5 100 75.0
RcHm_v2.0_Chr2g0122231 Rosa chinensis HOM05D002182 ORTHO05D004671 7.1e-37 157.5 97 75.3
TWI79G1433 Tripterygium wilfordii HOM05D002182 ORTHO05D004671 2.1e-36 156.0 104 70.2
unitig_62.g23374 Utricularia gibba HOM05D002182 ORTHO05D004671 2.1e-36 156.0 98 74.5
Potri.005G067100 Populus trichocarpa HOM05D002182 ORTHO05D004671 3.5e-36 155.2 96 75.0
QL10p041326 Quercus lobata HOM05D002182 ORTHO05D004671 3.5e-36 155.2 105 70.5
GSVIVG01026459001 Vitis vinifera HOM05D002182 ORTHO05D004671 3.5e-36 155.2 95 75.8
ECA248G2894 Erigeron canadensis HOM05D002182 ORTHO05D004671 4.6e-36 154.8 97 74.2
COL.COLO4_35769 Corchorus olitorius HOM05D003519 ORTHO05D004443 6.0e-36 154.5 90 80.0
SHI11490 Sapria himalayana HOM05D002182 ORTHO05D004671 6.0e-36 154.5 96 75.0
CARHR277840 Cardamine hirsuta HOM05D002182 ORTHO05D004671 1.8e-35 152.9 104 71.2
Cpa.g.sc37.4 Carica papaya HOM05D002182 ORTHO05D004671 1.8e-35 152.9 103 70.9
DCAR_023889 Daucus carota HOM05D002182 ORTHO05D004671 1.8e-35 152.9 95 74.7
Os03g0165000 Oryza sativa ssp. japonica HOM05D002182 ORTHO05D004671 2.3e-35 152.5 101 70.3
Sp2g26990 Schrenkiella parvula HOM05D002182 ORTHO05D004671 2.3e-35 152.5 107 68.2
THA.LOC104818422 Tarenaya hassleriana HOM05D002182 ORTHO05D004671 3.0e-35 152.1 107 69.2
Cfa002178 Carpinus fangiana HOM05D002182 ORTHO05D004671 3.9e-35 151.8 114 64.0
Sabra05G0055200 Salix brachista HOM05D002182 ORTHO05D004671 3.9e-35 151.8 96 72.9
Aa31LG1G17970 Aethionema arabicum HOM05D002182 ORTHO05D004671 5.1e-35 151.4 107 68.2
COL.COLO4_33656 Corchorus olitorius HOM05D002182 ORTHO05D004671 5.1e-35 151.4 94 78.7
Carub.0008s2470 Capsella rubella HOM05D002182 ORTHO05D004671 6.7e-35 151.0 107 67.3
FvH4_1g24710 Fragaria vesca HOM05D002182 ORTHO05D004671 6.7e-35 151.0 96 72.9
FAN19G2097 Fragaria x ananassa HOM05D002182 ORTHO05D004671 6.7e-35 151.0 101 70.3
FAN26G0537 Fragaria x ananassa HOM05D002182 ORTHO05D004671 6.7e-35 151.0 96 72.9
Sabra11G0021400 Salix brachista HOM05D002182 ORTHO05D004671 6.7e-35 151.0 96 72.9
HPP92_005922 Vanilla planifolia HOM05D002182 ORTHO05D004671 6.7e-35 151.0 100 74.0
HPP92_005924 Vanilla planifolia HOM05D002182 ORTHO05D004671 6.7e-35 151.0 100 74.0
AT5G63920 Arabidopsis thaliana HOM05D002182 ORTHO05D004671 8.7e-35 150.6 107 68.2
Thhalv10003618m.g Eutrema salsugineum HOM05D002182 ORTHO05D004671 8.7e-35 150.6 107 67.3
AL8G41160 Arabidopsis lyrata HOM05D002182 ORTHO05D004671 1.5e-34 149.8 107 68.2
FAN23G2830 Fragaria x ananassa HOM05D002182 ORTHO05D004671 1.9e-34 149.4 100 70.0
MD15G1134700 Malus domestica HOM05D002182 ORTHO05D004671 1.9e-34 149.4 103 68.9
BcaB07g29709 Brassica carinata HOM05D002182 ORTHO05D004671 2.5e-34 149.1 107 66.4
BcaC03g18232 Brassica carinata HOM05D002182 ORTHO05D004671 2.5e-34 149.1 107 66.4
A02p43050 Brassica napus HOM05D002182 ORTHO05D004671 2.5e-34 149.1 107 66.4
BolC2t12375H Brassica oleracea HOM05D002182 ORTHO05D004671 2.5e-34 149.1 107 66.4
BraA02t09226Z Brassica rapa HOM05D002182 ORTHO05D004671 2.5e-34 149.1 107 66.4
Sabra14G0091800 Salix brachista HOM05D002182 ORTHO05D004671 2.5e-34 149.1 96 71.9
Prupe.4G275500 Prunus persica HOM05D002182 ORTHO05D004671 4.3e-34 148.3 95 71.6
CANSAT01G2275 Cannabis sativa HOM05D002182 ORTHO05D004671 5.6e-34 147.9 100 72.0
ATR1001G007 Amborella trichopoda HOM05D002182 ORTHO05D004671 2.1e-33 146.0 95 70.5
C02p63010 Brassica napus HOM05D002182 ORTHO05D004671 2.1e-33 146.0 107 65.4
SEGI_35171 Sequoiadendron giganteum HOM05D002182 ORTHO05D004671 2.8e-33 145.6 103 68.9
Mapoly0113s0011 Marchantia polymorpha HOM05D002182 ORTHO05D004671 6.2e-33 144.4 96 71.9
Sabra09G0025500 Salix brachista HOM05D002182 ORTHO05D004671 6.2e-33 144.4 101 69.3
Sabra14G0026900 Salix brachista HOM05D002182 ORTHO05D004671 6.2e-33 144.4 101 69.3
Pp3c21_9710 Physcomitrium patens HOM05D002182 ORTHO05D004671 6.9e-32 141.0 97 69.1
Zm00001eb005010 Zea mays HOM05D002182 ORTHO05D004671 1.5e-31 139.8 111 60.4
Aqoxy5G02289 Aquilegia oxysepala HOM05D002182 ORTHO05D004671 5.8e-31 137.9 100 68.0
PSO384G2582 Papaver somniferum HOM05D002182 ORTHO05D004671 5.8e-31 137.9 98 69.4
PSO443G0075 Papaver somniferum HOM05D002182 ORTHO05D004671 9.3e-29 130.6 107 60.7
SMO114G0082 Selaginella moellendorffii HOM05D002182 ORTHO05D004671 4.3e-26 121.7 95 57.9
MCO11G433 Micromonas commoda HOM05D002182 ORTHO05D004671 1.9e-18 96.3 83 57.8
PRCOL_00003192 Prasinoderma coloniale HOM05D002182 ORTHO05D004671 1.9e-18 96.3 91 54.9
Haze_26976 Corylus avellana HOM05D002182 ORTHO05D004671 2.1e-12 76.3 93 43.0
FvH4_4g12750 Fragaria vesca HOM05D002182 ORTHO05D008382 1.0e-11 73.9 89 42.7
FAN12G0184 Fragaria x ananassa HOM05D002182 ORTHO05D008382 1.0e-11 73.9 89 42.7
FAN22G0833 Fragaria x ananassa HOM05D002182 ORTHO05D008382 1.0e-11 73.9 89 42.7
FAN17G1163 Fragaria x ananassa HOM05D002182 ORTHO05D008382 3.9e-11 72.0 89 41.6
HanXRQChr16g0517731 Helianthus annuus HOM05D002182 ORTHO05D004671 1.5e-10 70.1 93 39.8
RcHm_v2.0_Chr4g0412031 Rosa chinensis HOM05D002182 ORTHO05D008382 1.5e-10 70.1 89 41.6
GSVIVG01031636001 Vitis vinifera HOM05D002182 ORTHO05D008382 1.5e-10 70.1 88 42.0
BcaC01g05921 Brassica carinata HOM05D002182 ORTHO05D008382 2.0e-10 69.7 89 39.3
BraA03t11062Z Brassica rapa HOM05D002182 ORTHO05D008382 2.0e-10 69.7 89 39.3
BcaB01g03999 Brassica carinata HOM05D002182 ORTHO05D008382 2.6e-10 69.3 89 39.3
A03p18020 Brassica napus HOM05D002182 ORTHO05D008382 2.6e-10 69.3 89 39.3
C03p21060 Brassica napus HOM05D002182 ORTHO05D008382 3.3e-10 68.9 89 39.3
BolC3t14488H Brassica oleracea HOM05D002182 ORTHO05D008382 3.3e-10 68.9 89 39.3
CARHR125770 Cardamine hirsuta HOM05D002182 ORTHO05D008382 3.3e-10 68.9 89 39.3
AT2G32000 Arabidopsis thaliana HOM05D002182 ORTHO05D008382 4.4e-10 68.6 91 38.5
THA.LOC104800954 Tarenaya hassleriana HOM05D002182 ORTHO05D008382 4.4e-10 68.6 89 40.4
AL4G27360 Arabidopsis lyrata HOM05D002182 ORTHO05D008382 5.7e-10 68.2 89 39.3
Thhalv10016222m.g Eutrema salsugineum HOM05D002182 ORTHO05D008382 5.7e-10 68.2 89 39.3
Lalb_Chr23g0278251 Lupinus albus HOM05D002182 ORTHO05D008382 5.7e-10 68.2 89 40.4
AagrBONN_evm.TU.Sc2ySwM_228.2256 Anthoceros agrestis HOM05D002182 ORTHO05D008382 9.7e-10 67.4 88 39.8
SGA_v2.0_scaffold128G34129 Striga asiatica HOM05D002182 ORTHO05D008382 9.7e-10 67.4 89 41.6
Cc03_g09640 Coffea canephora HOM05D002182 ORTHO05D008382 1.3e-09 67.0 89 38.2
Migut.N00431 Erythranthe guttata HOM05D002182 ORTHO05D008382 1.3e-09 67.0 89 40.4
Medtr3g084800 Medicago truncatula HOM05D002182 ORTHO05D008382 1.7e-09 66.6 89 39.3
PSO063G4176 Papaver somniferum HOM05D002182 ORTHO05D008382 3.7e-09 65.5 89 39.3
MD04G1023600 Malus domestica HOM05D002182 ORTHO05D008382 4.8e-09 65.1 89 39.3
Ca_16436_v3 Cicer arietinum L. HOM05D002182 ORTHO05D008382 6.3e-09 64.7 89 38.2
Eucgr.L00646 Eucalyptus grandis HOM05D002182 ORTHO05D008382 6.3e-09 64.7 89 41.6
VMungo1383G0373 Vigna mungo HOM05D002182 ORTHO05D008382 8.2e-09 64.3 89 38.2
Mapoly0014s0219 Marchantia polymorpha HOM05D002182 ORTHO05D008382 1.1e-08 63.9 115 31.3
Phvul.001G264300 Phaseolus vulgaris HOM05D002182 ORTHO05D008382 1.1e-08 63.9 89 36.0
CANSAT78G1786 Cannabis sativa HOM05D002182 ORTHO05D008382 1.4e-08 63.5 89 37.1
MSTRG.420 Avicennia marina HOM05D002182 ORTHO05D008382 1.8e-08 63.2 89 37.1
Haze_11692 Corylus avellana HOM05D002182 ORTHO05D008382 1.8e-08 63.2 89 37.1
Glyma.11G253100 Glycine max HOM05D002182 ORTHO05D008382 1.8e-08 63.2 89 38.2
Pp3c8_22620 Physcomitrium patens HOM05D002182 ORTHO05D008382 1.8e-08 63.2 88 34.1
TPR.G18108 Trifolium pratense HOM05D002182 ORTHO05D008382 2.4e-08 62.8 89 38.2
CiPaw.01G112100 Carya illinoinensis HOM05D002182 ORTHO05D008382 4.1e-08 62.0 89 38.2
Ciclev10005848m.g Citrus clementina HOM05D002182 ORTHO05D008382 4.1e-08 62.0 90 36.7
COL.COLO4_35972 Corchorus olitorius HOM05D002182 ORTHO05D008382 4.1e-08 62.0 89 37.1
Oeu034295.1 Olea europaea HOM05D002182 ORTHO05D008382 4.1e-08 62.0 89 38.2
arahy.Tifrunner.gnm1.ann1.RWIY1E Arachis hypogaea HOM05D002182 ORTHO05D008382 5.3e-08 61.6 85 35.3
ECA238G0923 Erigeron canadensis HOM05D002182 ORTHO05D008382 5.3e-08 61.6 89 39.3
Gohir.A10G131800 Gossypium hirsutum HOM05D002182 ORTHO05D008382 5.3e-08 61.6 89 37.1
Psat5g097840 Pisum sativum HOM05D002182 ORTHO05D008382 5.3e-08 61.6 89 37.1
Sc19g0007480 Simmondsia chinensis HOM05D002182 ORTHO05D008382 5.3e-08 61.6 89 37.1
Gorai.011G150100 Gossypium raimondii HOM05D002182 ORTHO05D008382 9.1e-08 60.8 89 36.0
Ah.04g149650 Amaranthus hybridus HOM05D002182 ORTHO05D008382 1.2e-07 60.5 89 36.0
SEGI_13382 Sequoiadendron giganteum HOM05D002182 ORTHO05D008382 1.5e-07 60.1 88 35.2
Manes.01G002901 Manihot esculenta HOM05D002182 ORTHO05D008382 2.0e-07 59.7 88 36.4
Aqoxy2G03986 Aquilegia oxysepala HOM05D002182 ORTHO05D008382 2.6e-07 59.3 89 37.1
CDE05G0942 Ceratophyllum demersum HOM05D002182 ORTHO05D008382 2.6e-07 59.3 89 37.1
Potri.014G148800 Populus trichocarpa HOM05D002182 ORTHO05D008382 2.6e-07 59.3 89 33.7
Os09g0500600 Oryza sativa ssp. japonica HOM05D002182 ORTHO05D008382 3.4e-07 58.9 86 37.2
Sopen09g035820 Solanum pennellii HOM05D002182 ORTHO05D008382 4.5e-07 58.5 89 34.8
TAR365G1258 Trochodendron aralioides HOM05D002182 ORTHO05D008382 4.5e-07 58.5 89 37.1
CsaV3_3G015890 Cucumis sativus L. HOM05D002182 ORTHO05D008382 5.9e-07 58.2 88 37.5
Nn1g08084 Nelumbo nucifera HOM05D002182 ORTHO05D008382 5.9e-07 58.2 85 37.6
CSS0003059 Camellia sinensis var. sinensis HOM05D002182 ORTHO05D008382 7.7e-07 57.8 85 37.6
MCO11G923 Micromonas commoda HOM05D002182 ORTHO05D008382 1.0e-06 57.4 88 36.4
ATR0686G228 Amborella trichopoda HOM05D002182 ORTHO05D008382 1.3e-06 57.0 88 35.2
ClCG05G007130 Citrullus lanatus HOM05D002182 ORTHO05D008382 1.7e-06 56.6 90 36.7
Cfa022087 Carpinus fangiana HOM05D002182 ORTHO05D004671 2.2e-06 56.2 63 34.9
MELO3C006788.2 Cucumis melo HOM05D002182 ORTHO05D008382 3.8e-06 55.5 88 35.2
Sed0005840 Sechium edule HOM05D002182 ORTHO05D008382 3.8e-06 55.5 88 35.2
Hund19029 Selenicereus undatus HOM05D002182 ORTHO05D008382 3.8e-06 55.5 89 34.8
Solyc09g097880.4 Solanum lycopersicum HOM05D002182 ORTHO05D008382 5.0e-06 55.1 89 32.6


User provided reference genes

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