Gene: Solyc09g097880.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc09g097880.4
  • Transcript Identifier Solyc09g097880.4.1
  • Gene Type Coding gene
  • Location SL4.0ch09 : 67930876-67941571 : positive

Gene Family Information

  • ID HOM05D002182
  • #Genes/#Species 307/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc09g097880.4.1
  • uniprot A0A3Q7I8Z9
  • gene_id Solyc09g097880

Descriptions

  • Description DNA topoisomerase (AHRD V3.3 *** A0A2G3ATQ7_CAPCH)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006265
IBA
IEA
GOA DatabaseDNA topological change
GO:0006265
IEA
InterProDNA topological change
GO:0000278
ISO
PLAZA Integrative Orthologymitotic cell cycle AT5G63920
GO:0007059
ISO
PLAZA Integrative Orthologychromosome segregation AT5G63920
GO:0000712
ISO
PLAZA Integrative Orthologyresolution of meiotic recombination intermediates AT5G63920
GO:0051321
ISO
PLAZA Integrative Orthologymeiotic cell cycle AT5G63920
GO:0006281
ISO
PLAZA Integrative OrthologyDNA repair AT5G63920

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT2G32000
GO:0003916
IBA
IEA
GOA DatabaseDNA topoisomerase activity
GO:0003916
IEA
InterProDNA topoisomerase activity
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0016853
IEA
GOA Databaseisomerase activity
GO:0003917
IEA
GOA DatabaseDNA topoisomerase type I (single strand cut, ATP-independent) activity
GO:0003917
IEA
InterProDNA topoisomerase type I (single strand cut, ATP-independent) activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IBA
GOA Databasenucleus
GO:0016020
IEA
GOA Databasemembrane
GO:0016021
IEA
GOA Databaseintegral component of membrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000380 DNA topoisomerase, type IA
IPR013497 DNA topoisomerase, type IA, central
IPR013826 DNA topoisomerase, type IA, central region, subdomain 3
IPR013824 DNA topoisomerase, type IA, central region, subdomain 1
IPR023405 DNA topoisomerase, type IA, core domain
IPR006171 TOPRIM domain
IPR034144 DNA topoisomerase 3-like, TOPRIM domain
IPR013825 DNA topoisomerase, type IA, central region, subdomain 2
IPR003601 DNA topoisomerase, type IA, domain 2
IPR003602 DNA topoisomerase, type IA, DNA-binding domain
Mapman id Description
12.3.4.3.2 Chromatin organisation.post-translational histone modification.histone arginine methylation.TDRD3-TOP3B methyl-arginine reader complex.topoisomerase component TOP3b
15.3.6.2.3 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription termination.R-loop removal.type-1A topoisomerase (TOP3b)