Gene: Carub.0008s2470

General Information

Structural Information

  • Species Capsella rubella
  • Gene Identifier Carub.0008s2470
  • Transcript Identifier Carub.0008s2470.1
  • Gene Type Coding gene
  • Location scaffold_8 : 11941519-11947587 : negative

Gene Family Information

  • ID HOM05D002182
  • #Genes/#Species 307/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Carub.0008s2470.v1.1
  • pacid 39252821
  • synonym Carubv10025845m.g

Descriptions

  • Description PTHR11390//PTHR11390:SF21 - PROKARYOTIC DNA TOPOISOMERASE // DNA TOPOISOMERASE 3-ALPHA
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006265
IEA
InterProDNA topological change
GO:0006281
ISO
PLAZA Integrative OrthologyDNA repair AT5G63920
GO:0051321
ISO
PLAZA Integrative Orthologymeiotic cell cycle AT5G63920
GO:0000712
ISO
PLAZA Integrative Orthologyresolution of meiotic recombination intermediates AT5G63920
GO:0007059
ISO
PLAZA Integrative Orthologychromosome segregation AT5G63920
GO:0000278
ISO
PLAZA Integrative Orthologymitotic cell cycle AT5G63920

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0003916
IEA
InterProDNA topoisomerase activity
GO:0003917
IEA
InterProDNA topoisomerase type I (single strand cut, ATP-independent) activity
GO:0008270
IEA
InterProzinc ion binding
GO:0003676
IEA
InterPronucleic acid binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005694
IEA
InterProchromosome

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006171 TOPRIM domain
IPR013498 DNA topoisomerase, type IA, zn finger
IPR000380 DNA topoisomerase, type IA
IPR013497 DNA topoisomerase, type IA, central
IPR013825 DNA topoisomerase, type IA, central region, subdomain 2
IPR010666 Zinc finger, GRF-type
IPR013824 DNA topoisomerase, type IA, central region, subdomain 1
IPR003601 DNA topoisomerase, type IA, domain 2
IPR034144 DNA topoisomerase 3-like, TOPRIM domain
IPR036875 Zinc finger, CCHC-type superfamily
IPR013826 DNA topoisomerase, type IA, central region, subdomain 3
IPR003602 DNA topoisomerase, type IA, DNA-binding domain
IPR001878 Zinc finger, CCHC-type
IPR023405 DNA topoisomerase, type IA, core domain
Mapman id Description
13.3.5.5.3.2 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.RTR Holliday junction dissolution complex.topoisomerase component TOP3-alpha