Gene: Sopen09g035820

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen09g035820
  • Transcript Identifier Sopen09g035820.1
  • Gene Type Coding gene
  • Location Spenn-ch09 : 83534063-83544927 : positive

Gene Family Information

  • ID HOM05D002182
  • #Genes/#Species 307/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen09g035820.1

Descriptions

  • Description DNA topoisomerase, type IA, core | FUNCTIONS IN: DNA topoisomerase activity, DNA topoisomerase type I activity, DNA binding, nucleic acid binding | INVOLVED IN: DNA topological change, DNA unwinding involved in replication, DNA metabolic process | LOCATED IN: endomembrane system, chromosome | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Toprim domain, subgroup , DNA topoisomerase, type IA, central region, subdomain 1 , DNA topoisomerase, type IA, core , Toprim domain , DNA topoisomerase, type IA, DNA-binding , DNA topoisomerase, type IA, domain 2 , DNA topoisomerase, type IA, central , DNA topoisomerase, type IA, central region, subdomain 3 | BEST Arabidopsis thaliana protein match is: topoisomerase 3alpha
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006265
IEA
InterProDNA topological change

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0003916
IEA
InterProDNA topoisomerase activity
GO:0003917
IEA
InterProDNA topoisomerase type I (single strand cut, ATP-independent) activity
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT2G32000

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR034144 DNA topoisomerase 3-like, TOPRIM domain
IPR006171 TOPRIM domain
IPR013826 DNA topoisomerase, type IA, central region, subdomain 3
IPR023405 DNA topoisomerase, type IA, core domain
IPR003602 DNA topoisomerase, type IA, DNA-binding domain
IPR013825 DNA topoisomerase, type IA, central region, subdomain 2
IPR013824 DNA topoisomerase, type IA, central region, subdomain 1
IPR000380 DNA topoisomerase, type IA
IPR003601 DNA topoisomerase, type IA, domain 2
IPR013497 DNA topoisomerase, type IA, central
Mapman id Description
12.3.4.3.2 Chromatin organisation.post-translational histone modification.histone arginine methylation.TDRD3-TOP3B methyl-arginine reader complex.topoisomerase component TOP3b
15.3.6.2.3 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription termination.R-loop removal.type-1A topoisomerase (TOP3b)