Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002182', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '307', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A02p43050' => 'bna', 'A03p18020' => 'bna', 'A06p30540' => 'bna', 'Aa31LG1G17970' => 'aar', 'Aa31LG5G5010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2256' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5819' => 'aag', 'Actinidia20028' => 'ach', 'Actinidia20029' => 'ach', 'Actinidia20841' => 'ach', 'Actinidia20842' => 'ach', 'Actinidia35818' => 'ach', 'Ah.04g149650' => 'amhyb', 'Ah.06g191020' => 'amhyb', 'AL4G27360' => 'aly', 'AL8G41160' => 'aly', 'Aqoxy2G03986' => 'aox', 'Aqoxy5G02289' => 'aox', 'arahy.Tifrunner.gnm1.ann1.93YPU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5KUZ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWIY1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVSB6Y' => 'arhy', 'AT2G32000' => 'ath', 'AT5G63920' => 'ath', 'ATR0686G038' => 'atr', 'ATR0686G228' => 'atr', 'ATR1001G007' => 'atr', 'Atru.chr3.1773' => 'acertr', 'Atru.chr4.980' => 'acertr', 'AUR62000512' => 'cqu', 'AUR62006857' => 'cqu', 'AUR62018514' => 'cqu', 'AUR62020905' => 'cqu', 'BcaB01g03999' => 'bca', 'BcaB07g29709' => 'bca', 'BcaB08g34438' => 'bca', 'BcaC01g02646' => 'bca', 'BcaC01g05921' => 'bca', 'BcaC03g18232' => 'bca', 'BolC1t01713H' => 'bol', 'BolC2t12375H' => 'bol', 'BolC3t14488H' => 'bol', 'BolC3t18503H' => 'bol', 'BraA02t09226Z' => 'bra', 'BraA03t11062Z' => 'bra', 'BraA03t15260Z' => 'bra', 'BraA06t26003Z' => 'bra', 'C01p17790' => 'bna', 'C02p63010' => 'bna', 'C02p63020' => 'bna', 'C03p21060' => 'bna', 'C04p33650' => 'bna', 'CAN.G1325.5' => 'can', 'CAN.G163.2' => 'can', 'CAN.G524.21' => 'can', 'CANSAT01G2275' => 'cansat', 'CANSAT78G1786' => 'cansat', 'CARHR125770' => 'chi', 'CARHR277840' => 'chi', 'Carub.0004s1334' => 'cru', 'Carub.0008s2470' => 'cru', 'Ca_16436_v3' => 'car', 'Ca_16971_v3' => 'car', 'Ca_16979_v3' => 'car', 'CBR_g21883' => 'cbr', 'CBR_g74' => 'cbr', 'CBR_g74987' => 'cbr', 'Cc03_g09640' => 'ccan', 'Cc07_g19240' => 'ccan', 'Cc07_g20290' => 'ccan', 'Cc07_g20300' => 'ccan', 'CDE05G0942' => 'cde', 'CDE09G0651' => 'cde', 'CDE09G0788' => 'cde', 'Cfa002178' => 'cfa', 'Cfa022087' => 'cfa', 'Ciclev10003112m.g' => 'ccl', 'Ciclev10005848m.g' => 'ccl', 'Ciclev10006835m.g' => 'ccl', 'Ciclev10007073m.g' => 'ccl', 'CiPaw.01G112100' => 'cil', 'CiPaw.04G079900' => 'cil', 'ClCG05G007130' => 'cla', 'ClCG10G017010' => 'cla', 'COL.COLO4_33656' => 'col', 'COL.COLO4_35815' => 'col', 'COL.COLO4_35972' => 'col', 'Cpa.g.c33573' => 'cpa', 'Cpa.g.sc157.4' => 'cpa', 'Cpa.g.sc37.4' => 'cpa', 'Cre17.g725100' => 'cre', 'CsaV3_3G015890' => 'csa', 'CsaV3_3G039390' => 'csa', 'CSS0000135' => 'camsi', 'CSS0003059' => 'camsi', 'CSS0026830' => 'camsi', 'CSS0039016' => 'camsi', 'CSS0041549' => 'camsi', 'CSS0042552' => 'camsi', 'DCAR_023889' => 'dca', 'DCAR_024119' => 'dca', 'Dinv32179' => 'din', 'Dinv35485' => 'din', 'Duzib106G1908' => 'dzi', 'Duzib212G0342' => 'dzi', 'Duzib212G0489' => 'dzi', 'Duzib264G0915' => 'dzi', 'ECA238G0923' => 'eca', 'ECA248G2894' => 'eca', 'EL10Ac3g07419' => 'bvu', 'EL10Ac4g09621' => 'bvu', 'Eucgr.H05141' => 'egr', 'Eucgr.L00646' => 'egr', 'Eucgr.L00648' => 'egr', 'FAN12G0184' => 'fan', 'FAN17G1163' => 'fan', 'FAN19G2097' => 'fan', 'FAN22G0833' => 'fan', 'FAN23G2071' => 'fan', 'FAN23G2830' => 'fan', 'FAN26G0537' => 'fan', 'FAN26G1134' => 'fan', 'FAN26G3457' => 'fan', 'FvH4_1g24710' => 'fve', 'FvH4_4g12750' => 'fve', 'Glyma.06G155600' => 'gma', 'Glyma.11G253100' => 'gma', 'Glyma.18G003850' => 'gma', 'Gohir.A10G131800' => 'ghi', 'Gohir.A11G057650' => 'ghi', 'Gohir.A11G057700' => 'ghi', 'Gohir.D10G135200' => 'ghi', 'Gohir.D11G061900' => 'ghi', 'Gorai.007G066700' => 'gra', 'Gorai.011G150100' => 'gra', 'GSVIVG01026459001' => 'vvi', 'GSVIVG01026461001' => 'vvi', 'GSVIVG01031636001' => 'vvi', 'HanXRQChr01g0016911' => 'han', 'HanXRQChr01g0016921' => 'han', 'HanXRQChr02g0037311' => 'han', 'HanXRQChr06g0165731' => 'han', 'HanXRQChr14g0436751' => 'han', 'HanXRQChr16g0517731' => 'han', 'HanXRQChr16g0517741' => 'han', 'Haze_11692' => 'cav', 'Haze_25328' => 'cav', 'Haze_25330' => 'cav', 'Haze_25331' => 'cav', 'Haze_26976' => 'cav', 'Haze_26984' => 'cav', 'Hma1.2p1_2528F.1_g323950' => 'hma', 'HPP92_005917' => 'vpl', 'HPP92_005922' => 'vpl', 'HPP92_005923' => 'vpl', 'HPP92_005924' => 'vpl', 'HPP92_011791' => 'vpl', 'Hund19029' => 'sun', 'Hund21801' => 'sun', 'Lalb_Chr11g0068591' => 'lal', 'Lalb_Chr23g0278251' => 'lal', 'Lj1g0008046' => 'lja', 'Lj4C830T7' => 'lonja', 'Lj6C377T0' => 'lonja', 'Lj6g0009713' => 'lja', 'Lju912A3T6' => 'lonja', 'Lju912C3T0' => 'lonja', 'Lsat_1_v5_gn_1_78841' => 'lsa', 'Lsat_1_v5_gn_2_49140' => 'lsa', 'Manes.01G002901' => 'mes', 'Manes.13G078050' => 'mes', 'Mapoly0014s0219' => 'mpo', 'Mapoly0113s0011' => 'mpo', 'MBI07_g19432_MAGBIO' => 'mbi', 'MBI07_g33104_MAGBIO' => 'mbi', 'MBI07_g43314_MAGBIO' => 'mbi', 'MBI07_g47060_MAGBIO' => 'mbi', 'MBI07_g47157_MAGBIO' => 'mbi', 'MCO11G433' => 'mco', 'MCO11G923' => 'mco', 'MD04G1023600' => 'mdo', 'MD15G1134700' => 'mdo', 'Medtr3g084800' => 'mtr', 'Medtr3g096640' => 'mtr', 'Medtr5g061930' => 'mtr', 'Medtr5g061940' => 'mtr', 'MELO3C006788.2' => 'cme', 'MELO3C009682.2' => 'cme', 'Migut.H00785' => 'egut', 'Migut.H00803' => 'egut', 'Migut.N00431' => 'egut', 'MSTRG.420' => 'ama', 'Nitab4.5_0000120g0160' => 'nta', 'Nitab4.5_0000120g0170' => 'nta', 'Nitab4.5_0000309g0290' => 'nta', 'Nitab4.5_0001277g0010' => 'nta', 'Nitab4.5_0001277g0020' => 'nta', 'Nitab4.5_0001277g0030' => 'nta', 'Nitab4.5_0001277g0040' => 'nta', 'Nitab4.5_0004869g0010' => 'nta', 'Nn1g08084' => 'nnu', 'Nn5g28440' => 'nnu', 'Oeu034295.1' => 'oeu', 'Oeu050090.2' => 'oeu', 'Os03g0165000' => 'osa', 'Os09g0500600' => 'osa', 'Peaxi162Scf00151g00065' => 'pax', 'Peaxi162Scf00151g00069' => 'pax', 'Peaxi162Scf00151g00610' => 'pax', 'Peaxi162Scf00286g00722' => 'pax', 'PGR102G1182' => 'pgr', 'PGR142G0868' => 'pgr', 'PGSC0003DMG401017464' => 'stu', 'PGSC0003DMG402016626' => 'stu', 'PGSC0003DMG402017464' => 'stu', 'Phvul.001G264300' => 'pvu', 'Phvul.009G154850' => 'pvu', 'Potri.005G067100' => 'ptr', 'Potri.014G148800' => 'ptr', 'Pp3c21_9710' => 'ppa', 'Pp3c8_22620' => 'ppa', 'Pp3s46_340' => 'ppa', 'Pp3s46_350' => 'ppa', 'PRCOL_00003192' => 'pco', 'Prupe.1G173400' => 'ppe', 'Prupe.1G173500' => 'ppe', 'Prupe.4G275500' => 'ppe', 'Psat5g060640' => 'psa', 'Psat5g097840' => 'psa', 'PSO063G4176' => 'pso', 'PSO170G3411' => 'pso', 'PSO384G2582' => 'pso', 'PSO443G0075' => 'pso', 'PSO541G4120' => 'pso', 'PSO782G2357' => 'pso', 'QL04p089617' => 'qlo', 'QL06p028465' => 'qlo', 'QL06p028482' => 'qlo', 'QL10p041326' => 'qlo', 'RcHm_v2.0_Chr2g0108981' => 'rch', 'RcHm_v2.0_Chr2g0122231' => 'rch', 'RcHm_v2.0_Chr4g0412031' => 'rch', 'RcHm_v2.0_Chr7g0229331' => 'rch', 'Rhsim09G0063400' => 'rsi', 'Rhsim10G0124100' => 'rsi', 'Rhsim10G0124200' => 'rsi', 'Sabra05G0055200' => 'sbr', 'Sabra09G0025500' => 'sbr', 'Sabra11G0021400' => 'sbr', 'Sabra14G0026900' => 'sbr', 'Sabra14G0091800' => 'sbr', 'Sabra14G0112200' => 'sbr', 'Sabra16G0195800' => 'sbr', 'SalBow3G0147' => 'sbo', 'SalBow3G3405' => 'sbo', 'Sc16g0009510' => 'sci', 'Sc19g0007480' => 'sci', 'Sed0005840' => 'sed', 'Sed0010212' => 'sed', 'SEGI_13382' => 'sgi', 'SEGI_15758' => 'sgi', 'SEGI_16368' => 'sgi', 'SEGI_24428' => 'sgi', 'SEGI_35171' => 'sgi', 'SEGI_40414' => 'sgi', 'SGA_v2.0_scaffold128G34129' => 'sas', 'SGA_v2.0_scaffold54G19590' => 'sas', 'SHI11490' => 'shi', 'SHI36070' => 'shi', 'SHI36071' => 'shi', 'SHI36072' => 'shi', 'SMO114G0082' => 'smo', 'SMO167G0077' => 'smo', 'SMO296G0032' => 'smo', 'SMO347G0440' => 'smo', 'Solyc05g014720.4' => 'sly', 'Solyc05g014730.1' => 'sly', 'Solyc05g014740.1' => 'sly', 'Solyc05g014750.2' => 'sly', 'Solyc09g097880.4' => 'sly', 'Sopen05g009910' => 'spe', 'Sopen09g035820' => 'spe', 'Sp2g26990' => 'spa', 'Sp4g14400' => 'spa', 'TAR365G1258' => 'tar', 'TAR376G0522' => 'tar', 'THA.LOC104800954' => 'tha', 'THA.LOC104818422' => 'tha', 'Thecc.01G137400' => 'tca', 'Thecc.04G190100' => 'tca', 'Thhalv10003618m.g' => 'esa', 'Thhalv10016222m.g' => 'esa', 'TPR.G18108' => 'tpr', 'TPR.G33581' => 'tpr', 'TWI63G1391' => 'twi', 'TWI79G1433' => 'twi', 'unitig_62.g23374' => 'ugi', 'unitig_62.g23375' => 'ugi', 'vmacro00426' => 'vma', 'vmacro00427' => 'vma', 'vmacro12743' => 'vma', 'vmacro12744' => 'vma', 'vmacro12745' => 'vma', 'VMungo1309G0220' => 'vmu', 'VMungo1383G0373' => 'vmu', 'Zm00001eb005010' => 'zma', 'Zm00001eb317420' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002182', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002182' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002182', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '307', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002182' ) ), 'genes' => array( 'A02p43050' => 'bna', 'A03p18020' => 'bna', 'A06p30540' => 'bna', 'Aa31LG1G17970' => 'aar', 'Aa31LG5G5010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2256' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5819' => 'aag', 'Actinidia20028' => 'ach', 'Actinidia20029' => 'ach', 'Actinidia20841' => 'ach', 'Actinidia20842' => 'ach', 'Actinidia35818' => 'ach', 'Ah.04g149650' => 'amhyb', 'Ah.06g191020' => 'amhyb', 'AL4G27360' => 'aly', 'AL8G41160' => 'aly', 'Aqoxy2G03986' => 'aox', 'Aqoxy5G02289' => 'aox', 'arahy.Tifrunner.gnm1.ann1.93YPU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5KUZ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWIY1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVSB6Y' => 'arhy', 'AT2G32000' => 'ath', 'AT5G63920' => 'ath', 'ATR0686G038' => 'atr', 'ATR0686G228' => 'atr', 'ATR1001G007' => 'atr', 'Atru.chr3.1773' => 'acertr', 'Atru.chr4.980' => 'acertr', 'AUR62000512' => 'cqu', 'AUR62006857' => 'cqu', 'AUR62018514' => 'cqu', 'AUR62020905' => 'cqu', 'BcaB01g03999' => 'bca', 'BcaB07g29709' => 'bca', 'BcaB08g34438' => 'bca', 'BcaC01g02646' => 'bca', 'BcaC01g05921' => 'bca', 'BcaC03g18232' => 'bca', 'BolC1t01713H' => 'bol', 'BolC2t12375H' => 'bol', 'BolC3t14488H' => 'bol', 'BolC3t18503H' => 'bol', 'BraA02t09226Z' => 'bra', 'BraA03t11062Z' => 'bra', 'BraA03t15260Z' => 'bra', 'BraA06t26003Z' => 'bra', 'C01p17790' => 'bna', 'C02p63010' => 'bna', 'C02p63020' => 'bna', 'C03p21060' => 'bna', 'C04p33650' => 'bna', 'CAN.G1325.5' => 'can', 'CAN.G163.2' => 'can', 'CAN.G524.21' => 'can', 'CANSAT01G2275' => 'cansat', 'CANSAT78G1786' => 'cansat', 'CARHR125770' => 'chi', 'CARHR277840' => 'chi', 'Carub.0004s1334' => 'cru', 'Carub.0008s2470' => 'cru', 'Ca_16436_v3' => 'car', 'Ca_16971_v3' => 'car', 'Ca_16979_v3' => 'car', 'CBR_g21883' => 'cbr', 'CBR_g74' => 'cbr', 'CBR_g74987' => 'cbr', 'Cc03_g09640' => 'ccan', 'Cc07_g19240' => 'ccan', 'Cc07_g20290' => 'ccan', 'Cc07_g20300' => 'ccan', 'CDE05G0942' => 'cde', 'CDE09G0651' => 'cde', 'CDE09G0788' => 'cde', 'Cfa002178' => 'cfa', 'Cfa022087' => 'cfa', 'Ciclev10003112m.g' => 'ccl', 'Ciclev10005848m.g' => 'ccl', 'Ciclev10006835m.g' => 'ccl', 'Ciclev10007073m.g' => 'ccl', 'CiPaw.01G112100' => 'cil', 'CiPaw.04G079900' => 'cil', 'ClCG05G007130' => 'cla', 'ClCG10G017010' => 'cla', 'COL.COLO4_33656' => 'col', 'COL.COLO4_35815' => 'col', 'COL.COLO4_35972' => 'col', 'Cpa.g.c33573' => 'cpa', 'Cpa.g.sc157.4' => 'cpa', 'Cpa.g.sc37.4' => 'cpa', 'Cre17.g725100' => 'cre', 'CsaV3_3G015890' => 'csa', 'CsaV3_3G039390' => 'csa', 'CSS0000135' => 'camsi', 'CSS0003059' => 'camsi', 'CSS0026830' => 'camsi', 'CSS0039016' => 'camsi', 'CSS0041549' => 'camsi', 'CSS0042552' => 'camsi', 'DCAR_023889' => 'dca', 'DCAR_024119' => 'dca', 'Dinv32179' => 'din', 'Dinv35485' => 'din', 'Duzib106G1908' => 'dzi', 'Duzib212G0342' => 'dzi', 'Duzib212G0489' => 'dzi', 'Duzib264G0915' => 'dzi', 'ECA238G0923' => 'eca', 'ECA248G2894' => 'eca', 'EL10Ac3g07419' => 'bvu', 'EL10Ac4g09621' => 'bvu', 'Eucgr.H05141' => 'egr', 'Eucgr.L00646' => 'egr', 'Eucgr.L00648' => 'egr', 'FAN12G0184' => 'fan', 'FAN17G1163' => 'fan', 'FAN19G2097' => 'fan', 'FAN22G0833' => 'fan', 'FAN23G2071' => 'fan', 'FAN23G2830' => 'fan', 'FAN26G0537' => 'fan', 'FAN26G1134' => 'fan', 'FAN26G3457' => 'fan', 'FvH4_1g24710' => 'fve', 'FvH4_4g12750' => 'fve', 'Glyma.06G155600' => 'gma', 'Glyma.11G253100' => 'gma', 'Glyma.18G003850' => 'gma', 'Gohir.A10G131800' => 'ghi', 'Gohir.A11G057650' => 'ghi', 'Gohir.A11G057700' => 'ghi', 'Gohir.D10G135200' => 'ghi', 'Gohir.D11G061900' => 'ghi', 'Gorai.007G066700' => 'gra', 'Gorai.011G150100' => 'gra', 'GSVIVG01026459001' => 'vvi', 'GSVIVG01026461001' => 'vvi', 'GSVIVG01031636001' => 'vvi', 'HanXRQChr01g0016911' => 'han', 'HanXRQChr01g0016921' => 'han', 'HanXRQChr02g0037311' => 'han', 'HanXRQChr06g0165731' => 'han', 'HanXRQChr14g0436751' => 'han', 'HanXRQChr16g0517731' => 'han', 'HanXRQChr16g0517741' => 'han', 'Haze_11692' => 'cav', 'Haze_25328' => 'cav', 'Haze_25330' => 'cav', 'Haze_25331' => 'cav', 'Haze_26976' => 'cav', 'Haze_26984' => 'cav', 'Hma1.2p1_2528F.1_g323950' => 'hma', 'HPP92_005917' => 'vpl', 'HPP92_005922' => 'vpl', 'HPP92_005923' => 'vpl', 'HPP92_005924' => 'vpl', 'HPP92_011791' => 'vpl', 'Hund19029' => 'sun', 'Hund21801' => 'sun', 'Lalb_Chr11g0068591' => 'lal', 'Lalb_Chr23g0278251' => 'lal', 'Lj1g0008046' => 'lja', 'Lj4C830T7' => 'lonja', 'Lj6C377T0' => 'lonja', 'Lj6g0009713' => 'lja', 'Lju912A3T6' => 'lonja', 'Lju912C3T0' => 'lonja', 'Lsat_1_v5_gn_1_78841' => 'lsa', 'Lsat_1_v5_gn_2_49140' => 'lsa', 'Manes.01G002901' => 'mes', 'Manes.13G078050' => 'mes', 'Mapoly0014s0219' => 'mpo', 'Mapoly0113s0011' => 'mpo', 'MBI07_g19432_MAGBIO' => 'mbi', 'MBI07_g33104_MAGBIO' => 'mbi', 'MBI07_g43314_MAGBIO' => 'mbi', 'MBI07_g47060_MAGBIO' => 'mbi', 'MBI07_g47157_MAGBIO' => 'mbi', 'MCO11G433' => 'mco', 'MCO11G923' => 'mco', 'MD04G1023600' => 'mdo', 'MD15G1134700' => 'mdo', 'Medtr3g084800' => 'mtr', 'Medtr3g096640' => 'mtr', 'Medtr5g061930' => 'mtr', 'Medtr5g061940' => 'mtr', 'MELO3C006788.2' => 'cme', 'MELO3C009682.2' => 'cme', 'Migut.H00785' => 'egut', 'Migut.H00803' => 'egut', 'Migut.N00431' => 'egut', 'MSTRG.420' => 'ama', 'Nitab4.5_0000120g0160' => 'nta', 'Nitab4.5_0000120g0170' => 'nta', 'Nitab4.5_0000309g0290' => 'nta', 'Nitab4.5_0001277g0010' => 'nta', 'Nitab4.5_0001277g0020' => 'nta', 'Nitab4.5_0001277g0030' => 'nta', 'Nitab4.5_0001277g0040' => 'nta', 'Nitab4.5_0004869g0010' => 'nta', 'Nn1g08084' => 'nnu', 'Nn5g28440' => 'nnu', 'Oeu034295.1' => 'oeu', 'Oeu050090.2' => 'oeu', 'Os03g0165000' => 'osa', 'Os09g0500600' => 'osa', 'Peaxi162Scf00151g00065' => 'pax', 'Peaxi162Scf00151g00069' => 'pax', 'Peaxi162Scf00151g00610' => 'pax', 'Peaxi162Scf00286g00722' => 'pax', 'PGR102G1182' => 'pgr', 'PGR142G0868' => 'pgr', 'PGSC0003DMG401017464' => 'stu', 'PGSC0003DMG402016626' => 'stu', 'PGSC0003DMG402017464' => 'stu', 'Phvul.001G264300' => 'pvu', 'Phvul.009G154850' => 'pvu', 'Potri.005G067100' => 'ptr', 'Potri.014G148800' => 'ptr', 'Pp3c21_9710' => 'ppa', 'Pp3c8_22620' => 'ppa', 'Pp3s46_340' => 'ppa', 'Pp3s46_350' => 'ppa', 'PRCOL_00003192' => 'pco', 'Prupe.1G173400' => 'ppe', 'Prupe.1G173500' => 'ppe', 'Prupe.4G275500' => 'ppe', 'Psat5g060640' => 'psa', 'Psat5g097840' => 'psa', 'PSO063G4176' => 'pso', 'PSO170G3411' => 'pso', 'PSO384G2582' => 'pso', 'PSO443G0075' => 'pso', 'PSO541G4120' => 'pso', 'PSO782G2357' => 'pso', 'QL04p089617' => 'qlo', 'QL06p028465' => 'qlo', 'QL06p028482' => 'qlo', 'QL10p041326' => 'qlo', 'RcHm_v2.0_Chr2g0108981' => 'rch', 'RcHm_v2.0_Chr2g0122231' => 'rch', 'RcHm_v2.0_Chr4g0412031' => 'rch', 'RcHm_v2.0_Chr7g0229331' => 'rch', 'Rhsim09G0063400' => 'rsi', 'Rhsim10G0124100' => 'rsi', 'Rhsim10G0124200' => 'rsi', 'Sabra05G0055200' => 'sbr', 'Sabra09G0025500' => 'sbr', 'Sabra11G0021400' => 'sbr', 'Sabra14G0026900' => 'sbr', 'Sabra14G0091800' => 'sbr', 'Sabra14G0112200' => 'sbr', 'Sabra16G0195800' => 'sbr', 'SalBow3G0147' => 'sbo', 'SalBow3G3405' => 'sbo', 'Sc16g0009510' => 'sci', 'Sc19g0007480' => 'sci', 'Sed0005840' => 'sed', 'Sed0010212' => 'sed', 'SEGI_13382' => 'sgi', 'SEGI_15758' => 'sgi', 'SEGI_16368' => 'sgi', 'SEGI_24428' => 'sgi', 'SEGI_35171' => 'sgi', 'SEGI_40414' => 'sgi', 'SGA_v2.0_scaffold128G34129' => 'sas', 'SGA_v2.0_scaffold54G19590' => 'sas', 'SHI11490' => 'shi', 'SHI36070' => 'shi', 'SHI36071' => 'shi', 'SHI36072' => 'shi', 'SMO114G0082' => 'smo', 'SMO167G0077' => 'smo', 'SMO296G0032' => 'smo', 'SMO347G0440' => 'smo', 'Solyc05g014720.4' => 'sly', 'Solyc05g014730.1' => 'sly', 'Solyc05g014740.1' => 'sly', 'Solyc05g014750.2' => 'sly', 'Solyc09g097880.4' => 'sly', 'Sopen05g009910' => 'spe', 'Sopen09g035820' => 'spe', 'Sp2g26990' => 'spa', 'Sp4g14400' => 'spa', 'TAR365G1258' => 'tar', 'TAR376G0522' => 'tar', 'THA.LOC104800954' => 'tha', 'THA.LOC104818422' => 'tha', 'Thecc.01G137400' => 'tca', 'Thecc.04G190100' => 'tca', 'Thhalv10003618m.g' => 'esa', 'Thhalv10016222m.g' => 'esa', 'TPR.G18108' => 'tpr', 'TPR.G33581' => 'tpr', 'TWI63G1391' => 'twi', 'TWI79G1433' => 'twi', 'unitig_62.g23374' => 'ugi', 'unitig_62.g23375' => 'ugi', 'vmacro00426' => 'vma', 'vmacro00427' => 'vma', 'vmacro12743' => 'vma', 'vmacro12744' => 'vma', 'vmacro12745' => 'vma', 'VMungo1309G0220' => 'vmu', 'VMungo1383G0373' => 'vmu', 'Zm00001eb005010' => 'zma', 'Zm00001eb317420' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002182' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002182' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002182' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002182' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002182', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '307', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A02p43050' => 'bna', 'A03p18020' => 'bna', 'A06p30540' => 'bna', 'Aa31LG1G17970' => 'aar', 'Aa31LG5G5010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2256' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5819' => 'aag', 'Actinidia20028' => 'ach', 'Actinidia20029' => 'ach', 'Actinidia20841' => 'ach', 'Actinidia20842' => 'ach', 'Actinidia35818' => 'ach', 'Ah.04g149650' => 'amhyb', 'Ah.06g191020' => 'amhyb', 'AL4G27360' => 'aly', 'AL8G41160' => 'aly', 'Aqoxy2G03986' => 'aox', 'Aqoxy5G02289' => 'aox', 'arahy.Tifrunner.gnm1.ann1.93YPU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5KUZ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWIY1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVSB6Y' => 'arhy', 'AT2G32000' => 'ath', 'AT5G63920' => 'ath', 'ATR0686G038' => 'atr', 'ATR0686G228' => 'atr', 'ATR1001G007' => 'atr', 'Atru.chr3.1773' => 'acertr', 'Atru.chr4.980' => 'acertr', 'AUR62000512' => 'cqu', 'AUR62006857' => 'cqu', 'AUR62018514' => 'cqu', 'AUR62020905' => 'cqu', 'BcaB01g03999' => 'bca', 'BcaB07g29709' => 'bca', 'BcaB08g34438' => 'bca', 'BcaC01g02646' => 'bca', 'BcaC01g05921' => 'bca', 'BcaC03g18232' => 'bca', 'BolC1t01713H' => 'bol', 'BolC2t12375H' => 'bol', 'BolC3t14488H' => 'bol', 'BolC3t18503H' => 'bol', 'BraA02t09226Z' => 'bra', 'BraA03t11062Z' => 'bra', 'BraA03t15260Z' => 'bra', 'BraA06t26003Z' => 'bra', 'C01p17790' => 'bna', 'C02p63010' => 'bna', 'C02p63020' => 'bna', 'C03p21060' => 'bna', 'C04p33650' => 'bna', 'CAN.G1325.5' => 'can', 'CAN.G163.2' => 'can', 'CAN.G524.21' => 'can', 'CANSAT01G2275' => 'cansat', 'CANSAT78G1786' => 'cansat', 'CARHR125770' => 'chi', 'CARHR277840' => 'chi', 'Carub.0004s1334' => 'cru', 'Carub.0008s2470' => 'cru', 'Ca_16436_v3' => 'car', 'Ca_16971_v3' => 'car', 'Ca_16979_v3' => 'car', 'CBR_g21883' => 'cbr', 'CBR_g74' => 'cbr', 'CBR_g74987' => 'cbr', 'Cc03_g09640' => 'ccan', 'Cc07_g19240' => 'ccan', 'Cc07_g20290' => 'ccan', 'Cc07_g20300' => 'ccan', 'CDE05G0942' => 'cde', 'CDE09G0651' => 'cde', 'CDE09G0788' => 'cde', 'Cfa002178' => 'cfa', 'Cfa022087' => 'cfa', 'Ciclev10003112m.g' => 'ccl', 'Ciclev10005848m.g' => 'ccl', 'Ciclev10006835m.g' => 'ccl', 'Ciclev10007073m.g' => 'ccl', 'CiPaw.01G112100' => 'cil', 'CiPaw.04G079900' => 'cil', 'ClCG05G007130' => 'cla', 'ClCG10G017010' => 'cla', 'COL.COLO4_33656' => 'col', 'COL.COLO4_35815' => 'col', 'COL.COLO4_35972' => 'col', 'Cpa.g.c33573' => 'cpa', 'Cpa.g.sc157.4' => 'cpa', 'Cpa.g.sc37.4' => 'cpa', 'Cre17.g725100' => 'cre', 'CsaV3_3G015890' => 'csa', 'CsaV3_3G039390' => 'csa', 'CSS0000135' => 'camsi', 'CSS0003059' => 'camsi', 'CSS0026830' => 'camsi', 'CSS0039016' => 'camsi', 'CSS0041549' => 'camsi', 'CSS0042552' => 'camsi', 'DCAR_023889' => 'dca', 'DCAR_024119' => 'dca', 'Dinv32179' => 'din', 'Dinv35485' => 'din', 'Duzib106G1908' => 'dzi', 'Duzib212G0342' => 'dzi', 'Duzib212G0489' => 'dzi', 'Duzib264G0915' => 'dzi', 'ECA238G0923' => 'eca', 'ECA248G2894' => 'eca', 'EL10Ac3g07419' => 'bvu', 'EL10Ac4g09621' => 'bvu', 'Eucgr.H05141' => 'egr', 'Eucgr.L00646' => 'egr', 'Eucgr.L00648' => 'egr', 'FAN12G0184' => 'fan', 'FAN17G1163' => 'fan', 'FAN19G2097' => 'fan', 'FAN22G0833' => 'fan', 'FAN23G2071' => 'fan', 'FAN23G2830' => 'fan', 'FAN26G0537' => 'fan', 'FAN26G1134' => 'fan', 'FAN26G3457' => 'fan', 'FvH4_1g24710' => 'fve', 'FvH4_4g12750' => 'fve', 'Glyma.06G155600' => 'gma', 'Glyma.11G253100' => 'gma', 'Glyma.18G003850' => 'gma', 'Gohir.A10G131800' => 'ghi', 'Gohir.A11G057650' => 'ghi', 'Gohir.A11G057700' => 'ghi', 'Gohir.D10G135200' => 'ghi', 'Gohir.D11G061900' => 'ghi', 'Gorai.007G066700' => 'gra', 'Gorai.011G150100' => 'gra', 'GSVIVG01026459001' => 'vvi', 'GSVIVG01026461001' => 'vvi', 'GSVIVG01031636001' => 'vvi', 'HanXRQChr01g0016911' => 'han', 'HanXRQChr01g0016921' => 'han', 'HanXRQChr02g0037311' => 'han', 'HanXRQChr06g0165731' => 'han', 'HanXRQChr14g0436751' => 'han', 'HanXRQChr16g0517731' => 'han', 'HanXRQChr16g0517741' => 'han', 'Haze_11692' => 'cav', 'Haze_25328' => 'cav', 'Haze_25330' => 'cav', 'Haze_25331' => 'cav', 'Haze_26976' => 'cav', 'Haze_26984' => 'cav', 'Hma1.2p1_2528F.1_g323950' => 'hma', 'HPP92_005917' => 'vpl', 'HPP92_005922' => 'vpl', 'HPP92_005923' => 'vpl', 'HPP92_005924' => 'vpl', 'HPP92_011791' => 'vpl', 'Hund19029' => 'sun', 'Hund21801' => 'sun', 'Lalb_Chr11g0068591' => 'lal', 'Lalb_Chr23g0278251' => 'lal', 'Lj1g0008046' => 'lja', 'Lj4C830T7' => 'lonja', 'Lj6C377T0' => 'lonja', 'Lj6g0009713' => 'lja', 'Lju912A3T6' => 'lonja', 'Lju912C3T0' => 'lonja', 'Lsat_1_v5_gn_1_78841' => 'lsa', 'Lsat_1_v5_gn_2_49140' => 'lsa', 'Manes.01G002901' => 'mes', 'Manes.13G078050' => 'mes', 'Mapoly0014s0219' => 'mpo', 'Mapoly0113s0011' => 'mpo', 'MBI07_g19432_MAGBIO' => 'mbi', 'MBI07_g33104_MAGBIO' => 'mbi', 'MBI07_g43314_MAGBIO' => 'mbi', 'MBI07_g47060_MAGBIO' => 'mbi', 'MBI07_g47157_MAGBIO' => 'mbi', 'MCO11G433' => 'mco', 'MCO11G923' => 'mco', 'MD04G1023600' => 'mdo', 'MD15G1134700' => 'mdo', 'Medtr3g084800' => 'mtr', 'Medtr3g096640' => 'mtr', 'Medtr5g061930' => 'mtr', 'Medtr5g061940' => 'mtr', 'MELO3C006788.2' => 'cme', 'MELO3C009682.2' => 'cme', 'Migut.H00785' => 'egut', 'Migut.H00803' => 'egut', 'Migut.N00431' => 'egut', 'MSTRG.420' => 'ama', 'Nitab4.5_0000120g0160' => 'nta', 'Nitab4.5_0000120g0170' => 'nta', 'Nitab4.5_0000309g0290' => 'nta', 'Nitab4.5_0001277g0010' => 'nta', 'Nitab4.5_0001277g0020' => 'nta', 'Nitab4.5_0001277g0030' => 'nta', 'Nitab4.5_0001277g0040' => 'nta', 'Nitab4.5_0004869g0010' => 'nta', 'Nn1g08084' => 'nnu', 'Nn5g28440' => 'nnu', 'Oeu034295.1' => 'oeu', 'Oeu050090.2' => 'oeu', 'Os03g0165000' => 'osa', 'Os09g0500600' => 'osa', 'Peaxi162Scf00151g00065' => 'pax', 'Peaxi162Scf00151g00069' => 'pax', 'Peaxi162Scf00151g00610' => 'pax', 'Peaxi162Scf00286g00722' => 'pax', 'PGR102G1182' => 'pgr', 'PGR142G0868' => 'pgr', 'PGSC0003DMG401017464' => 'stu', 'PGSC0003DMG402016626' => 'stu', 'PGSC0003DMG402017464' => 'stu', 'Phvul.001G264300' => 'pvu', 'Phvul.009G154850' => 'pvu', 'Potri.005G067100' => 'ptr', 'Potri.014G148800' => 'ptr', 'Pp3c21_9710' => 'ppa', 'Pp3c8_22620' => 'ppa', 'Pp3s46_340' => 'ppa', 'Pp3s46_350' => 'ppa', 'PRCOL_00003192' => 'pco', 'Prupe.1G173400' => 'ppe', 'Prupe.1G173500' => 'ppe', 'Prupe.4G275500' => 'ppe', 'Psat5g060640' => 'psa', 'Psat5g097840' => 'psa', 'PSO063G4176' => 'pso', 'PSO170G3411' => 'pso', 'PSO384G2582' => 'pso', 'PSO443G0075' => 'pso', 'PSO541G4120' => 'pso', 'PSO782G2357' => 'pso', 'QL04p089617' => 'qlo', 'QL06p028465' => 'qlo', 'QL06p028482' => 'qlo', 'QL10p041326' => 'qlo', 'RcHm_v2.0_Chr2g0108981' => 'rch', 'RcHm_v2.0_Chr2g0122231' => 'rch', 'RcHm_v2.0_Chr4g0412031' => 'rch', 'RcHm_v2.0_Chr7g0229331' => 'rch', 'Rhsim09G0063400' => 'rsi', 'Rhsim10G0124100' => 'rsi', 'Rhsim10G0124200' => 'rsi', 'Sabra05G0055200' => 'sbr', 'Sabra09G0025500' => 'sbr', 'Sabra11G0021400' => 'sbr', 'Sabra14G0026900' => 'sbr', 'Sabra14G0091800' => 'sbr', 'Sabra14G0112200' => 'sbr', 'Sabra16G0195800' => 'sbr', 'SalBow3G0147' => 'sbo', 'SalBow3G3405' => 'sbo', 'Sc16g0009510' => 'sci', 'Sc19g0007480' => 'sci', 'Sed0005840' => 'sed', 'Sed0010212' => 'sed', 'SEGI_13382' => 'sgi', 'SEGI_15758' => 'sgi', 'SEGI_16368' => 'sgi', 'SEGI_24428' => 'sgi', 'SEGI_35171' => 'sgi', 'SEGI_40414' => 'sgi', 'SGA_v2.0_scaffold128G34129' => 'sas', 'SGA_v2.0_scaffold54G19590' => 'sas', 'SHI11490' => 'shi', 'SHI36070' => 'shi', 'SHI36071' => 'shi', 'SHI36072' => 'shi', 'SMO114G0082' => 'smo', 'SMO167G0077' => 'smo', 'SMO296G0032' => 'smo', 'SMO347G0440' => 'smo', 'Solyc05g014720.4' => 'sly', 'Solyc05g014730.1' => 'sly', 'Solyc05g014740.1' => 'sly', 'Solyc05g014750.2' => 'sly', 'Solyc09g097880.4' => 'sly', 'Sopen05g009910' => 'spe', 'Sopen09g035820' => 'spe', 'Sp2g26990' => 'spa', 'Sp4g14400' => 'spa', 'TAR365G1258' => 'tar', 'TAR376G0522' => 'tar', 'THA.LOC104800954' => 'tha', 'THA.LOC104818422' => 'tha', 'Thecc.01G137400' => 'tca', 'Thecc.04G190100' => 'tca', 'Thhalv10003618m.g' => 'esa', 'Thhalv10016222m.g' => 'esa', 'TPR.G18108' => 'tpr', 'TPR.G33581' => 'tpr', 'TWI63G1391' => 'twi', 'TWI79G1433' => 'twi', 'unitig_62.g23374' => 'ugi', 'unitig_62.g23375' => 'ugi', 'vmacro00426' => 'vma', 'vmacro00427' => 'vma', 'vmacro12743' => 'vma', 'vmacro12744' => 'vma', 'vmacro12745' => 'vma', 'VMungo1309G0220' => 'vmu', 'VMungo1383G0373' => 'vmu', 'Zm00001eb005010' => 'zma', 'Zm00001eb317420' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002182', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002182' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002182', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '307', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002182' ) ), 'genes' => array( 'A02p43050' => 'bna', 'A03p18020' => 'bna', 'A06p30540' => 'bna', 'Aa31LG1G17970' => 'aar', 'Aa31LG5G5010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2256' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5819' => 'aag', 'Actinidia20028' => 'ach', 'Actinidia20029' => 'ach', 'Actinidia20841' => 'ach', 'Actinidia20842' => 'ach', 'Actinidia35818' => 'ach', 'Ah.04g149650' => 'amhyb', 'Ah.06g191020' => 'amhyb', 'AL4G27360' => 'aly', 'AL8G41160' => 'aly', 'Aqoxy2G03986' => 'aox', 'Aqoxy5G02289' => 'aox', 'arahy.Tifrunner.gnm1.ann1.93YPU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5KUZ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWIY1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVSB6Y' => 'arhy', 'AT2G32000' => 'ath', 'AT5G63920' => 'ath', 'ATR0686G038' => 'atr', 'ATR0686G228' => 'atr', 'ATR1001G007' => 'atr', 'Atru.chr3.1773' => 'acertr', 'Atru.chr4.980' => 'acertr', 'AUR62000512' => 'cqu', 'AUR62006857' => 'cqu', 'AUR62018514' => 'cqu', 'AUR62020905' => 'cqu', 'BcaB01g03999' => 'bca', 'BcaB07g29709' => 'bca', 'BcaB08g34438' => 'bca', 'BcaC01g02646' => 'bca', 'BcaC01g05921' => 'bca', 'BcaC03g18232' => 'bca', 'BolC1t01713H' => 'bol', 'BolC2t12375H' => 'bol', 'BolC3t14488H' => 'bol', 'BolC3t18503H' => 'bol', 'BraA02t09226Z' => 'bra', 'BraA03t11062Z' => 'bra', 'BraA03t15260Z' => 'bra', 'BraA06t26003Z' => 'bra', 'C01p17790' => 'bna', 'C02p63010' => 'bna', 'C02p63020' => 'bna', 'C03p21060' => 'bna', 'C04p33650' => 'bna', 'CAN.G1325.5' => 'can', 'CAN.G163.2' => 'can', 'CAN.G524.21' => 'can', 'CANSAT01G2275' => 'cansat', 'CANSAT78G1786' => 'cansat', 'CARHR125770' => 'chi', 'CARHR277840' => 'chi', 'Carub.0004s1334' => 'cru', 'Carub.0008s2470' => 'cru', 'Ca_16436_v3' => 'car', 'Ca_16971_v3' => 'car', 'Ca_16979_v3' => 'car', 'CBR_g21883' => 'cbr', 'CBR_g74' => 'cbr', 'CBR_g74987' => 'cbr', 'Cc03_g09640' => 'ccan', 'Cc07_g19240' => 'ccan', 'Cc07_g20290' => 'ccan', 'Cc07_g20300' => 'ccan', 'CDE05G0942' => 'cde', 'CDE09G0651' => 'cde', 'CDE09G0788' => 'cde', 'Cfa002178' => 'cfa', 'Cfa022087' => 'cfa', 'Ciclev10003112m.g' => 'ccl', 'Ciclev10005848m.g' => 'ccl', 'Ciclev10006835m.g' => 'ccl', 'Ciclev10007073m.g' => 'ccl', 'CiPaw.01G112100' => 'cil', 'CiPaw.04G079900' => 'cil', 'ClCG05G007130' => 'cla', 'ClCG10G017010' => 'cla', 'COL.COLO4_33656' => 'col', 'COL.COLO4_35815' => 'col', 'COL.COLO4_35972' => 'col', 'Cpa.g.c33573' => 'cpa', 'Cpa.g.sc157.4' => 'cpa', 'Cpa.g.sc37.4' => 'cpa', 'Cre17.g725100' => 'cre', 'CsaV3_3G015890' => 'csa', 'CsaV3_3G039390' => 'csa', 'CSS0000135' => 'camsi', 'CSS0003059' => 'camsi', 'CSS0026830' => 'camsi', 'CSS0039016' => 'camsi', 'CSS0041549' => 'camsi', 'CSS0042552' => 'camsi', 'DCAR_023889' => 'dca', 'DCAR_024119' => 'dca', 'Dinv32179' => 'din', 'Dinv35485' => 'din', 'Duzib106G1908' => 'dzi', 'Duzib212G0342' => 'dzi', 'Duzib212G0489' => 'dzi', 'Duzib264G0915' => 'dzi', 'ECA238G0923' => 'eca', 'ECA248G2894' => 'eca', 'EL10Ac3g07419' => 'bvu', 'EL10Ac4g09621' => 'bvu', 'Eucgr.H05141' => 'egr', 'Eucgr.L00646' => 'egr', 'Eucgr.L00648' => 'egr', 'FAN12G0184' => 'fan', 'FAN17G1163' => 'fan', 'FAN19G2097' => 'fan', 'FAN22G0833' => 'fan', 'FAN23G2071' => 'fan', 'FAN23G2830' => 'fan', 'FAN26G0537' => 'fan', 'FAN26G1134' => 'fan', 'FAN26G3457' => 'fan', 'FvH4_1g24710' => 'fve', 'FvH4_4g12750' => 'fve', 'Glyma.06G155600' => 'gma', 'Glyma.11G253100' => 'gma', 'Glyma.18G003850' => 'gma', 'Gohir.A10G131800' => 'ghi', 'Gohir.A11G057650' => 'ghi', 'Gohir.A11G057700' => 'ghi', 'Gohir.D10G135200' => 'ghi', 'Gohir.D11G061900' => 'ghi', 'Gorai.007G066700' => 'gra', 'Gorai.011G150100' => 'gra', 'GSVIVG01026459001' => 'vvi', 'GSVIVG01026461001' => 'vvi', 'GSVIVG01031636001' => 'vvi', 'HanXRQChr01g0016911' => 'han', 'HanXRQChr01g0016921' => 'han', 'HanXRQChr02g0037311' => 'han', 'HanXRQChr06g0165731' => 'han', 'HanXRQChr14g0436751' => 'han', 'HanXRQChr16g0517731' => 'han', 'HanXRQChr16g0517741' => 'han', 'Haze_11692' => 'cav', 'Haze_25328' => 'cav', 'Haze_25330' => 'cav', 'Haze_25331' => 'cav', 'Haze_26976' => 'cav', 'Haze_26984' => 'cav', 'Hma1.2p1_2528F.1_g323950' => 'hma', 'HPP92_005917' => 'vpl', 'HPP92_005922' => 'vpl', 'HPP92_005923' => 'vpl', 'HPP92_005924' => 'vpl', 'HPP92_011791' => 'vpl', 'Hund19029' => 'sun', 'Hund21801' => 'sun', 'Lalb_Chr11g0068591' => 'lal', 'Lalb_Chr23g0278251' => 'lal', 'Lj1g0008046' => 'lja', 'Lj4C830T7' => 'lonja', 'Lj6C377T0' => 'lonja', 'Lj6g0009713' => 'lja', 'Lju912A3T6' => 'lonja', 'Lju912C3T0' => 'lonja', 'Lsat_1_v5_gn_1_78841' => 'lsa', 'Lsat_1_v5_gn_2_49140' => 'lsa', 'Manes.01G002901' => 'mes', 'Manes.13G078050' => 'mes', 'Mapoly0014s0219' => 'mpo', 'Mapoly0113s0011' => 'mpo', 'MBI07_g19432_MAGBIO' => 'mbi', 'MBI07_g33104_MAGBIO' => 'mbi', 'MBI07_g43314_MAGBIO' => 'mbi', 'MBI07_g47060_MAGBIO' => 'mbi', 'MBI07_g47157_MAGBIO' => 'mbi', 'MCO11G433' => 'mco', 'MCO11G923' => 'mco', 'MD04G1023600' => 'mdo', 'MD15G1134700' => 'mdo', 'Medtr3g084800' => 'mtr', 'Medtr3g096640' => 'mtr', 'Medtr5g061930' => 'mtr', 'Medtr5g061940' => 'mtr', 'MELO3C006788.2' => 'cme', 'MELO3C009682.2' => 'cme', 'Migut.H00785' => 'egut', 'Migut.H00803' => 'egut', 'Migut.N00431' => 'egut', 'MSTRG.420' => 'ama', 'Nitab4.5_0000120g0160' => 'nta', 'Nitab4.5_0000120g0170' => 'nta', 'Nitab4.5_0000309g0290' => 'nta', 'Nitab4.5_0001277g0010' => 'nta', 'Nitab4.5_0001277g0020' => 'nta', 'Nitab4.5_0001277g0030' => 'nta', 'Nitab4.5_0001277g0040' => 'nta', 'Nitab4.5_0004869g0010' => 'nta', 'Nn1g08084' => 'nnu', 'Nn5g28440' => 'nnu', 'Oeu034295.1' => 'oeu', 'Oeu050090.2' => 'oeu', 'Os03g0165000' => 'osa', 'Os09g0500600' => 'osa', 'Peaxi162Scf00151g00065' => 'pax', 'Peaxi162Scf00151g00069' => 'pax', 'Peaxi162Scf00151g00610' => 'pax', 'Peaxi162Scf00286g00722' => 'pax', 'PGR102G1182' => 'pgr', 'PGR142G0868' => 'pgr', 'PGSC0003DMG401017464' => 'stu', 'PGSC0003DMG402016626' => 'stu', 'PGSC0003DMG402017464' => 'stu', 'Phvul.001G264300' => 'pvu', 'Phvul.009G154850' => 'pvu', 'Potri.005G067100' => 'ptr', 'Potri.014G148800' => 'ptr', 'Pp3c21_9710' => 'ppa', 'Pp3c8_22620' => 'ppa', 'Pp3s46_340' => 'ppa', 'Pp3s46_350' => 'ppa', 'PRCOL_00003192' => 'pco', 'Prupe.1G173400' => 'ppe', 'Prupe.1G173500' => 'ppe', 'Prupe.4G275500' => 'ppe', 'Psat5g060640' => 'psa', 'Psat5g097840' => 'psa', 'PSO063G4176' => 'pso', 'PSO170G3411' => 'pso', 'PSO384G2582' => 'pso', 'PSO443G0075' => 'pso', 'PSO541G4120' => 'pso', 'PSO782G2357' => 'pso', 'QL04p089617' => 'qlo', 'QL06p028465' => 'qlo', 'QL06p028482' => 'qlo', 'QL10p041326' => 'qlo', 'RcHm_v2.0_Chr2g0108981' => 'rch', 'RcHm_v2.0_Chr2g0122231' => 'rch', 'RcHm_v2.0_Chr4g0412031' => 'rch', 'RcHm_v2.0_Chr7g0229331' => 'rch', 'Rhsim09G0063400' => 'rsi', 'Rhsim10G0124100' => 'rsi', 'Rhsim10G0124200' => 'rsi', 'Sabra05G0055200' => 'sbr', 'Sabra09G0025500' => 'sbr', 'Sabra11G0021400' => 'sbr', 'Sabra14G0026900' => 'sbr', 'Sabra14G0091800' => 'sbr', 'Sabra14G0112200' => 'sbr', 'Sabra16G0195800' => 'sbr', 'SalBow3G0147' => 'sbo', 'SalBow3G3405' => 'sbo', 'Sc16g0009510' => 'sci', 'Sc19g0007480' => 'sci', 'Sed0005840' => 'sed', 'Sed0010212' => 'sed', 'SEGI_13382' => 'sgi', 'SEGI_15758' => 'sgi', 'SEGI_16368' => 'sgi', 'SEGI_24428' => 'sgi', 'SEGI_35171' => 'sgi', 'SEGI_40414' => 'sgi', 'SGA_v2.0_scaffold128G34129' => 'sas', 'SGA_v2.0_scaffold54G19590' => 'sas', 'SHI11490' => 'shi', 'SHI36070' => 'shi', 'SHI36071' => 'shi', 'SHI36072' => 'shi', 'SMO114G0082' => 'smo', 'SMO167G0077' => 'smo', 'SMO296G0032' => 'smo', 'SMO347G0440' => 'smo', 'Solyc05g014720.4' => 'sly', 'Solyc05g014730.1' => 'sly', 'Solyc05g014740.1' => 'sly', 'Solyc05g014750.2' => 'sly', 'Solyc09g097880.4' => 'sly', 'Sopen05g009910' => 'spe', 'Sopen09g035820' => 'spe', 'Sp2g26990' => 'spa', 'Sp4g14400' => 'spa', 'TAR365G1258' => 'tar', 'TAR376G0522' => 'tar', 'THA.LOC104800954' => 'tha', 'THA.LOC104818422' => 'tha', 'Thecc.01G137400' => 'tca', 'Thecc.04G190100' => 'tca', 'Thhalv10003618m.g' => 'esa', 'Thhalv10016222m.g' => 'esa', 'TPR.G18108' => 'tpr', 'TPR.G33581' => 'tpr', 'TWI63G1391' => 'twi', 'TWI79G1433' => 'twi', 'unitig_62.g23374' => 'ugi', 'unitig_62.g23375' => 'ugi', 'vmacro00426' => 'vma', 'vmacro00427' => 'vma', 'vmacro12743' => 'vma', 'vmacro12744' => 'vma', 'vmacro12745' => 'vma', 'VMungo1309G0220' => 'vmu', 'VMungo1383G0373' => 'vmu', 'Zm00001eb005010' => 'zma', 'Zm00001eb317420' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002182' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002182' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002182' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002182' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002182', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '307', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A02p43050' => 'bna', 'A03p18020' => 'bna', 'A06p30540' => 'bna', 'Aa31LG1G17970' => 'aar', 'Aa31LG5G5010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2256' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5819' => 'aag', 'Actinidia20028' => 'ach', 'Actinidia20029' => 'ach', 'Actinidia20841' => 'ach', 'Actinidia20842' => 'ach', 'Actinidia35818' => 'ach', 'Ah.04g149650' => 'amhyb', 'Ah.06g191020' => 'amhyb', 'AL4G27360' => 'aly', 'AL8G41160' => 'aly', 'Aqoxy2G03986' => 'aox', 'Aqoxy5G02289' => 'aox', 'arahy.Tifrunner.gnm1.ann1.93YPU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5KUZ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWIY1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVSB6Y' => 'arhy', 'AT2G32000' => 'ath', 'AT5G63920' => 'ath', 'ATR0686G038' => 'atr', 'ATR0686G228' => 'atr', 'ATR1001G007' => 'atr', 'Atru.chr3.1773' => 'acertr', 'Atru.chr4.980' => 'acertr', 'AUR62000512' => 'cqu', 'AUR62006857' => 'cqu', 'AUR62018514' => 'cqu', 'AUR62020905' => 'cqu', 'BcaB01g03999' => 'bca', 'BcaB07g29709' => 'bca', 'BcaB08g34438' => 'bca', 'BcaC01g02646' => 'bca', 'BcaC01g05921' => 'bca', 'BcaC03g18232' => 'bca', 'BolC1t01713H' => 'bol', 'BolC2t12375H' => 'bol', 'BolC3t14488H' => 'bol', 'BolC3t18503H' => 'bol', 'BraA02t09226Z' => 'bra', 'BraA03t11062Z' => 'bra', 'BraA03t15260Z' => 'bra', 'BraA06t26003Z' => 'bra', 'C01p17790' => 'bna', 'C02p63010' => 'bna', 'C02p63020' => 'bna', 'C03p21060' => 'bna', 'C04p33650' => 'bna', 'CAN.G1325.5' => 'can', 'CAN.G163.2' => 'can', 'CAN.G524.21' => 'can', 'CANSAT01G2275' => 'cansat', 'CANSAT78G1786' => 'cansat', 'CARHR125770' => 'chi', 'CARHR277840' => 'chi', 'Carub.0004s1334' => 'cru', 'Carub.0008s2470' => 'cru', 'Ca_16436_v3' => 'car', 'Ca_16971_v3' => 'car', 'Ca_16979_v3' => 'car', 'CBR_g21883' => 'cbr', 'CBR_g74' => 'cbr', 'CBR_g74987' => 'cbr', 'Cc03_g09640' => 'ccan', 'Cc07_g19240' => 'ccan', 'Cc07_g20290' => 'ccan', 'Cc07_g20300' => 'ccan', 'CDE05G0942' => 'cde', 'CDE09G0651' => 'cde', 'CDE09G0788' => 'cde', 'Cfa002178' => 'cfa', 'Cfa022087' => 'cfa', 'Ciclev10003112m.g' => 'ccl', 'Ciclev10005848m.g' => 'ccl', 'Ciclev10006835m.g' => 'ccl', 'Ciclev10007073m.g' => 'ccl', 'CiPaw.01G112100' => 'cil', 'CiPaw.04G079900' => 'cil', 'ClCG05G007130' => 'cla', 'ClCG10G017010' => 'cla', 'COL.COLO4_33656' => 'col', 'COL.COLO4_35815' => 'col', 'COL.COLO4_35972' => 'col', 'Cpa.g.c33573' => 'cpa', 'Cpa.g.sc157.4' => 'cpa', 'Cpa.g.sc37.4' => 'cpa', 'Cre17.g725100' => 'cre', 'CsaV3_3G015890' => 'csa', 'CsaV3_3G039390' => 'csa', 'CSS0000135' => 'camsi', 'CSS0003059' => 'camsi', 'CSS0026830' => 'camsi', 'CSS0039016' => 'camsi', 'CSS0041549' => 'camsi', 'CSS0042552' => 'camsi', 'DCAR_023889' => 'dca', 'DCAR_024119' => 'dca', 'Dinv32179' => 'din', 'Dinv35485' => 'din', 'Duzib106G1908' => 'dzi', 'Duzib212G0342' => 'dzi', 'Duzib212G0489' => 'dzi', 'Duzib264G0915' => 'dzi', 'ECA238G0923' => 'eca', 'ECA248G2894' => 'eca', 'EL10Ac3g07419' => 'bvu', 'EL10Ac4g09621' => 'bvu', 'Eucgr.H05141' => 'egr', 'Eucgr.L00646' => 'egr', 'Eucgr.L00648' => 'egr', 'FAN12G0184' => 'fan', 'FAN17G1163' => 'fan', 'FAN19G2097' => 'fan', 'FAN22G0833' => 'fan', 'FAN23G2071' => 'fan', 'FAN23G2830' => 'fan', 'FAN26G0537' => 'fan', 'FAN26G1134' => 'fan', 'FAN26G3457' => 'fan', 'FvH4_1g24710' => 'fve', 'FvH4_4g12750' => 'fve', 'Glyma.06G155600' => 'gma', 'Glyma.11G253100' => 'gma', 'Glyma.18G003850' => 'gma', 'Gohir.A10G131800' => 'ghi', 'Gohir.A11G057650' => 'ghi', 'Gohir.A11G057700' => 'ghi', 'Gohir.D10G135200' => 'ghi', 'Gohir.D11G061900' => 'ghi', 'Gorai.007G066700' => 'gra', 'Gorai.011G150100' => 'gra', 'GSVIVG01026459001' => 'vvi', 'GSVIVG01026461001' => 'vvi', 'GSVIVG01031636001' => 'vvi', 'HanXRQChr01g0016911' => 'han', 'HanXRQChr01g0016921' => 'han', 'HanXRQChr02g0037311' => 'han', 'HanXRQChr06g0165731' => 'han', 'HanXRQChr14g0436751' => 'han', 'HanXRQChr16g0517731' => 'han', 'HanXRQChr16g0517741' => 'han', 'Haze_11692' => 'cav', 'Haze_25328' => 'cav', 'Haze_25330' => 'cav', 'Haze_25331' => 'cav', 'Haze_26976' => 'cav', 'Haze_26984' => 'cav', 'Hma1.2p1_2528F.1_g323950' => 'hma', 'HPP92_005917' => 'vpl', 'HPP92_005922' => 'vpl', 'HPP92_005923' => 'vpl', 'HPP92_005924' => 'vpl', 'HPP92_011791' => 'vpl', 'Hund19029' => 'sun', 'Hund21801' => 'sun', 'Lalb_Chr11g0068591' => 'lal', 'Lalb_Chr23g0278251' => 'lal', 'Lj1g0008046' => 'lja', 'Lj4C830T7' => 'lonja', 'Lj6C377T0' => 'lonja', 'Lj6g0009713' => 'lja', 'Lju912A3T6' => 'lonja', 'Lju912C3T0' => 'lonja', 'Lsat_1_v5_gn_1_78841' => 'lsa', 'Lsat_1_v5_gn_2_49140' => 'lsa', 'Manes.01G002901' => 'mes', 'Manes.13G078050' => 'mes', 'Mapoly0014s0219' => 'mpo', 'Mapoly0113s0011' => 'mpo', 'MBI07_g19432_MAGBIO' => 'mbi', 'MBI07_g33104_MAGBIO' => 'mbi', 'MBI07_g43314_MAGBIO' => 'mbi', 'MBI07_g47060_MAGBIO' => 'mbi', 'MBI07_g47157_MAGBIO' => 'mbi', 'MCO11G433' => 'mco', 'MCO11G923' => 'mco', 'MD04G1023600' => 'mdo', 'MD15G1134700' => 'mdo', 'Medtr3g084800' => 'mtr', 'Medtr3g096640' => 'mtr', 'Medtr5g061930' => 'mtr', 'Medtr5g061940' => 'mtr', 'MELO3C006788.2' => 'cme', 'MELO3C009682.2' => 'cme', 'Migut.H00785' => 'egut', 'Migut.H00803' => 'egut', 'Migut.N00431' => 'egut', 'MSTRG.420' => 'ama', 'Nitab4.5_0000120g0160' => 'nta', 'Nitab4.5_0000120g0170' => 'nta', 'Nitab4.5_0000309g0290' => 'nta', 'Nitab4.5_0001277g0010' => 'nta', 'Nitab4.5_0001277g0020' => 'nta', 'Nitab4.5_0001277g0030' => 'nta', 'Nitab4.5_0001277g0040' => 'nta', 'Nitab4.5_0004869g0010' => 'nta', 'Nn1g08084' => 'nnu', 'Nn5g28440' => 'nnu', 'Oeu034295.1' => 'oeu', 'Oeu050090.2' => 'oeu', 'Os03g0165000' => 'osa', 'Os09g0500600' => 'osa', 'Peaxi162Scf00151g00065' => 'pax', 'Peaxi162Scf00151g00069' => 'pax', 'Peaxi162Scf00151g00610' => 'pax', 'Peaxi162Scf00286g00722' => 'pax', 'PGR102G1182' => 'pgr', 'PGR142G0868' => 'pgr', 'PGSC0003DMG401017464' => 'stu', 'PGSC0003DMG402016626' => 'stu', 'PGSC0003DMG402017464' => 'stu', 'Phvul.001G264300' => 'pvu', 'Phvul.009G154850' => 'pvu', 'Potri.005G067100' => 'ptr', 'Potri.014G148800' => 'ptr', 'Pp3c21_9710' => 'ppa', 'Pp3c8_22620' => 'ppa', 'Pp3s46_340' => 'ppa', 'Pp3s46_350' => 'ppa', 'PRCOL_00003192' => 'pco', 'Prupe.1G173400' => 'ppe', 'Prupe.1G173500' => 'ppe', 'Prupe.4G275500' => 'ppe', 'Psat5g060640' => 'psa', 'Psat5g097840' => 'psa', 'PSO063G4176' => 'pso', 'PSO170G3411' => 'pso', 'PSO384G2582' => 'pso', 'PSO443G0075' => 'pso', 'PSO541G4120' => 'pso', 'PSO782G2357' => 'pso', 'QL04p089617' => 'qlo', 'QL06p028465' => 'qlo', 'QL06p028482' => 'qlo', 'QL10p041326' => 'qlo', 'RcHm_v2.0_Chr2g0108981' => 'rch', 'RcHm_v2.0_Chr2g0122231' => 'rch', 'RcHm_v2.0_Chr4g0412031' => 'rch', 'RcHm_v2.0_Chr7g0229331' => 'rch', 'Rhsim09G0063400' => 'rsi', 'Rhsim10G0124100' => 'rsi', 'Rhsim10G0124200' => 'rsi', 'Sabra05G0055200' => 'sbr', 'Sabra09G0025500' => 'sbr', 'Sabra11G0021400' => 'sbr', 'Sabra14G0026900' => 'sbr', 'Sabra14G0091800' => 'sbr', 'Sabra14G0112200' => 'sbr', 'Sabra16G0195800' => 'sbr', 'SalBow3G0147' => 'sbo', 'SalBow3G3405' => 'sbo', 'Sc16g0009510' => 'sci', 'Sc19g0007480' => 'sci', 'Sed0005840' => 'sed', 'Sed0010212' => 'sed', 'SEGI_13382' => 'sgi', 'SEGI_15758' => 'sgi', 'SEGI_16368' => 'sgi', 'SEGI_24428' => 'sgi', 'SEGI_35171' => 'sgi', 'SEGI_40414' => 'sgi', 'SGA_v2.0_scaffold128G34129' => 'sas', 'SGA_v2.0_scaffold54G19590' => 'sas', 'SHI11490' => 'shi', 'SHI36070' => 'shi', 'SHI36071' => 'shi', 'SHI36072' => 'shi', 'SMO114G0082' => 'smo', 'SMO167G0077' => 'smo', 'SMO296G0032' => 'smo', 'SMO347G0440' => 'smo', 'Solyc05g014720.4' => 'sly', 'Solyc05g014730.1' => 'sly', 'Solyc05g014740.1' => 'sly', 'Solyc05g014750.2' => 'sly', 'Solyc09g097880.4' => 'sly', 'Sopen05g009910' => 'spe', 'Sopen09g035820' => 'spe', 'Sp2g26990' => 'spa', 'Sp4g14400' => 'spa', 'TAR365G1258' => 'tar', 'TAR376G0522' => 'tar', 'THA.LOC104800954' => 'tha', 'THA.LOC104818422' => 'tha', 'Thecc.01G137400' => 'tca', 'Thecc.04G190100' => 'tca', 'Thhalv10003618m.g' => 'esa', 'Thhalv10016222m.g' => 'esa', 'TPR.G18108' => 'tpr', 'TPR.G33581' => 'tpr', 'TWI63G1391' => 'twi', 'TWI79G1433' => 'twi', 'unitig_62.g23374' => 'ugi', 'unitig_62.g23375' => 'ugi', 'vmacro00426' => 'vma', 'vmacro00427' => 'vma', 'vmacro12743' => 'vma', 'vmacro12744' => 'vma', 'vmacro12745' => 'vma', 'VMungo1309G0220' => 'vmu', 'VMungo1383G0373' => 'vmu', 'Zm00001eb005010' => 'zma', 'Zm00001eb317420' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002182', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002182' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002182', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '307', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002182' ) ), 'genes' => array( 'A02p43050' => 'bna', 'A03p18020' => 'bna', 'A06p30540' => 'bna', 'Aa31LG1G17970' => 'aar', 'Aa31LG5G5010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2256' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5819' => 'aag', 'Actinidia20028' => 'ach', 'Actinidia20029' => 'ach', 'Actinidia20841' => 'ach', 'Actinidia20842' => 'ach', 'Actinidia35818' => 'ach', 'Ah.04g149650' => 'amhyb', 'Ah.06g191020' => 'amhyb', 'AL4G27360' => 'aly', 'AL8G41160' => 'aly', 'Aqoxy2G03986' => 'aox', 'Aqoxy5G02289' => 'aox', 'arahy.Tifrunner.gnm1.ann1.93YPU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5KUZ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWIY1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVSB6Y' => 'arhy', 'AT2G32000' => 'ath', 'AT5G63920' => 'ath', 'ATR0686G038' => 'atr', 'ATR0686G228' => 'atr', 'ATR1001G007' => 'atr', 'Atru.chr3.1773' => 'acertr', 'Atru.chr4.980' => 'acertr', 'AUR62000512' => 'cqu', 'AUR62006857' => 'cqu', 'AUR62018514' => 'cqu', 'AUR62020905' => 'cqu', 'BcaB01g03999' => 'bca', 'BcaB07g29709' => 'bca', 'BcaB08g34438' => 'bca', 'BcaC01g02646' => 'bca', 'BcaC01g05921' => 'bca', 'BcaC03g18232' => 'bca', 'BolC1t01713H' => 'bol', 'BolC2t12375H' => 'bol', 'BolC3t14488H' => 'bol', 'BolC3t18503H' => 'bol', 'BraA02t09226Z' => 'bra', 'BraA03t11062Z' => 'bra', 'BraA03t15260Z' => 'bra', 'BraA06t26003Z' => 'bra', 'C01p17790' => 'bna', 'C02p63010' => 'bna', 'C02p63020' => 'bna', 'C03p21060' => 'bna', 'C04p33650' => 'bna', 'CAN.G1325.5' => 'can', 'CAN.G163.2' => 'can', 'CAN.G524.21' => 'can', 'CANSAT01G2275' => 'cansat', 'CANSAT78G1786' => 'cansat', 'CARHR125770' => 'chi', 'CARHR277840' => 'chi', 'Carub.0004s1334' => 'cru', 'Carub.0008s2470' => 'cru', 'Ca_16436_v3' => 'car', 'Ca_16971_v3' => 'car', 'Ca_16979_v3' => 'car', 'CBR_g21883' => 'cbr', 'CBR_g74' => 'cbr', 'CBR_g74987' => 'cbr', 'Cc03_g09640' => 'ccan', 'Cc07_g19240' => 'ccan', 'Cc07_g20290' => 'ccan', 'Cc07_g20300' => 'ccan', 'CDE05G0942' => 'cde', 'CDE09G0651' => 'cde', 'CDE09G0788' => 'cde', 'Cfa002178' => 'cfa', 'Cfa022087' => 'cfa', 'Ciclev10003112m.g' => 'ccl', 'Ciclev10005848m.g' => 'ccl', 'Ciclev10006835m.g' => 'ccl', 'Ciclev10007073m.g' => 'ccl', 'CiPaw.01G112100' => 'cil', 'CiPaw.04G079900' => 'cil', 'ClCG05G007130' => 'cla', 'ClCG10G017010' => 'cla', 'COL.COLO4_33656' => 'col', 'COL.COLO4_35815' => 'col', 'COL.COLO4_35972' => 'col', 'Cpa.g.c33573' => 'cpa', 'Cpa.g.sc157.4' => 'cpa', 'Cpa.g.sc37.4' => 'cpa', 'Cre17.g725100' => 'cre', 'CsaV3_3G015890' => 'csa', 'CsaV3_3G039390' => 'csa', 'CSS0000135' => 'camsi', 'CSS0003059' => 'camsi', 'CSS0026830' => 'camsi', 'CSS0039016' => 'camsi', 'CSS0041549' => 'camsi', 'CSS0042552' => 'camsi', 'DCAR_023889' => 'dca', 'DCAR_024119' => 'dca', 'Dinv32179' => 'din', 'Dinv35485' => 'din', 'Duzib106G1908' => 'dzi', 'Duzib212G0342' => 'dzi', 'Duzib212G0489' => 'dzi', 'Duzib264G0915' => 'dzi', 'ECA238G0923' => 'eca', 'ECA248G2894' => 'eca', 'EL10Ac3g07419' => 'bvu', 'EL10Ac4g09621' => 'bvu', 'Eucgr.H05141' => 'egr', 'Eucgr.L00646' => 'egr', 'Eucgr.L00648' => 'egr', 'FAN12G0184' => 'fan', 'FAN17G1163' => 'fan', 'FAN19G2097' => 'fan', 'FAN22G0833' => 'fan', 'FAN23G2071' => 'fan', 'FAN23G2830' => 'fan', 'FAN26G0537' => 'fan', 'FAN26G1134' => 'fan', 'FAN26G3457' => 'fan', 'FvH4_1g24710' => 'fve', 'FvH4_4g12750' => 'fve', 'Glyma.06G155600' => 'gma', 'Glyma.11G253100' => 'gma', 'Glyma.18G003850' => 'gma', 'Gohir.A10G131800' => 'ghi', 'Gohir.A11G057650' => 'ghi', 'Gohir.A11G057700' => 'ghi', 'Gohir.D10G135200' => 'ghi', 'Gohir.D11G061900' => 'ghi', 'Gorai.007G066700' => 'gra', 'Gorai.011G150100' => 'gra', 'GSVIVG01026459001' => 'vvi', 'GSVIVG01026461001' => 'vvi', 'GSVIVG01031636001' => 'vvi', 'HanXRQChr01g0016911' => 'han', 'HanXRQChr01g0016921' => 'han', 'HanXRQChr02g0037311' => 'han', 'HanXRQChr06g0165731' => 'han', 'HanXRQChr14g0436751' => 'han', 'HanXRQChr16g0517731' => 'han', 'HanXRQChr16g0517741' => 'han', 'Haze_11692' => 'cav', 'Haze_25328' => 'cav', 'Haze_25330' => 'cav', 'Haze_25331' => 'cav', 'Haze_26976' => 'cav', 'Haze_26984' => 'cav', 'Hma1.2p1_2528F.1_g323950' => 'hma', 'HPP92_005917' => 'vpl', 'HPP92_005922' => 'vpl', 'HPP92_005923' => 'vpl', 'HPP92_005924' => 'vpl', 'HPP92_011791' => 'vpl', 'Hund19029' => 'sun', 'Hund21801' => 'sun', 'Lalb_Chr11g0068591' => 'lal', 'Lalb_Chr23g0278251' => 'lal', 'Lj1g0008046' => 'lja', 'Lj4C830T7' => 'lonja', 'Lj6C377T0' => 'lonja', 'Lj6g0009713' => 'lja', 'Lju912A3T6' => 'lonja', 'Lju912C3T0' => 'lonja', 'Lsat_1_v5_gn_1_78841' => 'lsa', 'Lsat_1_v5_gn_2_49140' => 'lsa', 'Manes.01G002901' => 'mes', 'Manes.13G078050' => 'mes', 'Mapoly0014s0219' => 'mpo', 'Mapoly0113s0011' => 'mpo', 'MBI07_g19432_MAGBIO' => 'mbi', 'MBI07_g33104_MAGBIO' => 'mbi', 'MBI07_g43314_MAGBIO' => 'mbi', 'MBI07_g47060_MAGBIO' => 'mbi', 'MBI07_g47157_MAGBIO' => 'mbi', 'MCO11G433' => 'mco', 'MCO11G923' => 'mco', 'MD04G1023600' => 'mdo', 'MD15G1134700' => 'mdo', 'Medtr3g084800' => 'mtr', 'Medtr3g096640' => 'mtr', 'Medtr5g061930' => 'mtr', 'Medtr5g061940' => 'mtr', 'MELO3C006788.2' => 'cme', 'MELO3C009682.2' => 'cme', 'Migut.H00785' => 'egut', 'Migut.H00803' => 'egut', 'Migut.N00431' => 'egut', 'MSTRG.420' => 'ama', 'Nitab4.5_0000120g0160' => 'nta', 'Nitab4.5_0000120g0170' => 'nta', 'Nitab4.5_0000309g0290' => 'nta', 'Nitab4.5_0001277g0010' => 'nta', 'Nitab4.5_0001277g0020' => 'nta', 'Nitab4.5_0001277g0030' => 'nta', 'Nitab4.5_0001277g0040' => 'nta', 'Nitab4.5_0004869g0010' => 'nta', 'Nn1g08084' => 'nnu', 'Nn5g28440' => 'nnu', 'Oeu034295.1' => 'oeu', 'Oeu050090.2' => 'oeu', 'Os03g0165000' => 'osa', 'Os09g0500600' => 'osa', 'Peaxi162Scf00151g00065' => 'pax', 'Peaxi162Scf00151g00069' => 'pax', 'Peaxi162Scf00151g00610' => 'pax', 'Peaxi162Scf00286g00722' => 'pax', 'PGR102G1182' => 'pgr', 'PGR142G0868' => 'pgr', 'PGSC0003DMG401017464' => 'stu', 'PGSC0003DMG402016626' => 'stu', 'PGSC0003DMG402017464' => 'stu', 'Phvul.001G264300' => 'pvu', 'Phvul.009G154850' => 'pvu', 'Potri.005G067100' => 'ptr', 'Potri.014G148800' => 'ptr', 'Pp3c21_9710' => 'ppa', 'Pp3c8_22620' => 'ppa', 'Pp3s46_340' => 'ppa', 'Pp3s46_350' => 'ppa', 'PRCOL_00003192' => 'pco', 'Prupe.1G173400' => 'ppe', 'Prupe.1G173500' => 'ppe', 'Prupe.4G275500' => 'ppe', 'Psat5g060640' => 'psa', 'Psat5g097840' => 'psa', 'PSO063G4176' => 'pso', 'PSO170G3411' => 'pso', 'PSO384G2582' => 'pso', 'PSO443G0075' => 'pso', 'PSO541G4120' => 'pso', 'PSO782G2357' => 'pso', 'QL04p089617' => 'qlo', 'QL06p028465' => 'qlo', 'QL06p028482' => 'qlo', 'QL10p041326' => 'qlo', 'RcHm_v2.0_Chr2g0108981' => 'rch', 'RcHm_v2.0_Chr2g0122231' => 'rch', 'RcHm_v2.0_Chr4g0412031' => 'rch', 'RcHm_v2.0_Chr7g0229331' => 'rch', 'Rhsim09G0063400' => 'rsi', 'Rhsim10G0124100' => 'rsi', 'Rhsim10G0124200' => 'rsi', 'Sabra05G0055200' => 'sbr', 'Sabra09G0025500' => 'sbr', 'Sabra11G0021400' => 'sbr', 'Sabra14G0026900' => 'sbr', 'Sabra14G0091800' => 'sbr', 'Sabra14G0112200' => 'sbr', 'Sabra16G0195800' => 'sbr', 'SalBow3G0147' => 'sbo', 'SalBow3G3405' => 'sbo', 'Sc16g0009510' => 'sci', 'Sc19g0007480' => 'sci', 'Sed0005840' => 'sed', 'Sed0010212' => 'sed', 'SEGI_13382' => 'sgi', 'SEGI_15758' => 'sgi', 'SEGI_16368' => 'sgi', 'SEGI_24428' => 'sgi', 'SEGI_35171' => 'sgi', 'SEGI_40414' => 'sgi', 'SGA_v2.0_scaffold128G34129' => 'sas', 'SGA_v2.0_scaffold54G19590' => 'sas', 'SHI11490' => 'shi', 'SHI36070' => 'shi', 'SHI36071' => 'shi', 'SHI36072' => 'shi', 'SMO114G0082' => 'smo', 'SMO167G0077' => 'smo', 'SMO296G0032' => 'smo', 'SMO347G0440' => 'smo', 'Solyc05g014720.4' => 'sly', 'Solyc05g014730.1' => 'sly', 'Solyc05g014740.1' => 'sly', 'Solyc05g014750.2' => 'sly', 'Solyc09g097880.4' => 'sly', 'Sopen05g009910' => 'spe', 'Sopen09g035820' => 'spe', 'Sp2g26990' => 'spa', 'Sp4g14400' => 'spa', 'TAR365G1258' => 'tar', 'TAR376G0522' => 'tar', 'THA.LOC104800954' => 'tha', 'THA.LOC104818422' => 'tha', 'Thecc.01G137400' => 'tca', 'Thecc.04G190100' => 'tca', 'Thhalv10003618m.g' => 'esa', 'Thhalv10016222m.g' => 'esa', 'TPR.G18108' => 'tpr', 'TPR.G33581' => 'tpr', 'TWI63G1391' => 'twi', 'TWI79G1433' => 'twi', 'unitig_62.g23374' => 'ugi', 'unitig_62.g23375' => 'ugi', 'vmacro00426' => 'vma', 'vmacro00427' => 'vma', 'vmacro12743' => 'vma', 'vmacro12744' => 'vma', 'vmacro12745' => 'vma', 'VMungo1309G0220' => 'vmu', 'VMungo1383G0373' => 'vmu', 'Zm00001eb005010' => 'zma', 'Zm00001eb317420' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002182' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002182' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002182' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002182' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002182', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '307', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A02p43050' => 'bna', 'A03p18020' => 'bna', 'A06p30540' => 'bna', 'Aa31LG1G17970' => 'aar', 'Aa31LG5G5010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2256' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5819' => 'aag', 'Actinidia20028' => 'ach', 'Actinidia20029' => 'ach', 'Actinidia20841' => 'ach', 'Actinidia20842' => 'ach', 'Actinidia35818' => 'ach', 'Ah.04g149650' => 'amhyb', 'Ah.06g191020' => 'amhyb', 'AL4G27360' => 'aly', 'AL8G41160' => 'aly', 'Aqoxy2G03986' => 'aox', 'Aqoxy5G02289' => 'aox', 'arahy.Tifrunner.gnm1.ann1.93YPU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5KUZ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWIY1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVSB6Y' => 'arhy', 'AT2G32000' => 'ath', 'AT5G63920' => 'ath', 'ATR0686G038' => 'atr', 'ATR0686G228' => 'atr', 'ATR1001G007' => 'atr', 'Atru.chr3.1773' => 'acertr', 'Atru.chr4.980' => 'acertr', 'AUR62000512' => 'cqu', 'AUR62006857' => 'cqu', 'AUR62018514' => 'cqu', 'AUR62020905' => 'cqu', 'BcaB01g03999' => 'bca', 'BcaB07g29709' => 'bca', 'BcaB08g34438' => 'bca', 'BcaC01g02646' => 'bca', 'BcaC01g05921' => 'bca', 'BcaC03g18232' => 'bca', 'BolC1t01713H' => 'bol', 'BolC2t12375H' => 'bol', 'BolC3t14488H' => 'bol', 'BolC3t18503H' => 'bol', 'BraA02t09226Z' => 'bra', 'BraA03t11062Z' => 'bra', 'BraA03t15260Z' => 'bra', 'BraA06t26003Z' => 'bra', 'C01p17790' => 'bna', 'C02p63010' => 'bna', 'C02p63020' => 'bna', 'C03p21060' => 'bna', 'C04p33650' => 'bna', 'CAN.G1325.5' => 'can', 'CAN.G163.2' => 'can', 'CAN.G524.21' => 'can', 'CANSAT01G2275' => 'cansat', 'CANSAT78G1786' => 'cansat', 'CARHR125770' => 'chi', 'CARHR277840' => 'chi', 'Carub.0004s1334' => 'cru', 'Carub.0008s2470' => 'cru', 'Ca_16436_v3' => 'car', 'Ca_16971_v3' => 'car', 'Ca_16979_v3' => 'car', 'CBR_g21883' => 'cbr', 'CBR_g74' => 'cbr', 'CBR_g74987' => 'cbr', 'Cc03_g09640' => 'ccan', 'Cc07_g19240' => 'ccan', 'Cc07_g20290' => 'ccan', 'Cc07_g20300' => 'ccan', 'CDE05G0942' => 'cde', 'CDE09G0651' => 'cde', 'CDE09G0788' => 'cde', 'Cfa002178' => 'cfa', 'Cfa022087' => 'cfa', 'Ciclev10003112m.g' => 'ccl', 'Ciclev10005848m.g' => 'ccl', 'Ciclev10006835m.g' => 'ccl', 'Ciclev10007073m.g' => 'ccl', 'CiPaw.01G112100' => 'cil', 'CiPaw.04G079900' => 'cil', 'ClCG05G007130' => 'cla', 'ClCG10G017010' => 'cla', 'COL.COLO4_33656' => 'col', 'COL.COLO4_35815' => 'col', 'COL.COLO4_35972' => 'col', 'Cpa.g.c33573' => 'cpa', 'Cpa.g.sc157.4' => 'cpa', 'Cpa.g.sc37.4' => 'cpa', 'Cre17.g725100' => 'cre', 'CsaV3_3G015890' => 'csa', 'CsaV3_3G039390' => 'csa', 'CSS0000135' => 'camsi', 'CSS0003059' => 'camsi', 'CSS0026830' => 'camsi', 'CSS0039016' => 'camsi', 'CSS0041549' => 'camsi', 'CSS0042552' => 'camsi', 'DCAR_023889' => 'dca', 'DCAR_024119' => 'dca', 'Dinv32179' => 'din', 'Dinv35485' => 'din', 'Duzib106G1908' => 'dzi', 'Duzib212G0342' => 'dzi', 'Duzib212G0489' => 'dzi', 'Duzib264G0915' => 'dzi', 'ECA238G0923' => 'eca', 'ECA248G2894' => 'eca', 'EL10Ac3g07419' => 'bvu', 'EL10Ac4g09621' => 'bvu', 'Eucgr.H05141' => 'egr', 'Eucgr.L00646' => 'egr', 'Eucgr.L00648' => 'egr', 'FAN12G0184' => 'fan', 'FAN17G1163' => 'fan', 'FAN19G2097' => 'fan', 'FAN22G0833' => 'fan', 'FAN23G2071' => 'fan', 'FAN23G2830' => 'fan', 'FAN26G0537' => 'fan', 'FAN26G1134' => 'fan', 'FAN26G3457' => 'fan', 'FvH4_1g24710' => 'fve', 'FvH4_4g12750' => 'fve', 'Glyma.06G155600' => 'gma', 'Glyma.11G253100' => 'gma', 'Glyma.18G003850' => 'gma', 'Gohir.A10G131800' => 'ghi', 'Gohir.A11G057650' => 'ghi', 'Gohir.A11G057700' => 'ghi', 'Gohir.D10G135200' => 'ghi', 'Gohir.D11G061900' => 'ghi', 'Gorai.007G066700' => 'gra', 'Gorai.011G150100' => 'gra', 'GSVIVG01026459001' => 'vvi', 'GSVIVG01026461001' => 'vvi', 'GSVIVG01031636001' => 'vvi', 'HanXRQChr01g0016911' => 'han', 'HanXRQChr01g0016921' => 'han', 'HanXRQChr02g0037311' => 'han', 'HanXRQChr06g0165731' => 'han', 'HanXRQChr14g0436751' => 'han', 'HanXRQChr16g0517731' => 'han', 'HanXRQChr16g0517741' => 'han', 'Haze_11692' => 'cav', 'Haze_25328' => 'cav', 'Haze_25330' => 'cav', 'Haze_25331' => 'cav', 'Haze_26976' => 'cav', 'Haze_26984' => 'cav', 'Hma1.2p1_2528F.1_g323950' => 'hma', 'HPP92_005917' => 'vpl', 'HPP92_005922' => 'vpl', 'HPP92_005923' => 'vpl', 'HPP92_005924' => 'vpl', 'HPP92_011791' => 'vpl', 'Hund19029' => 'sun', 'Hund21801' => 'sun', 'Lalb_Chr11g0068591' => 'lal', 'Lalb_Chr23g0278251' => 'lal', 'Lj1g0008046' => 'lja', 'Lj4C830T7' => 'lonja', 'Lj6C377T0' => 'lonja', 'Lj6g0009713' => 'lja', 'Lju912A3T6' => 'lonja', 'Lju912C3T0' => 'lonja', 'Lsat_1_v5_gn_1_78841' => 'lsa', 'Lsat_1_v5_gn_2_49140' => 'lsa', 'Manes.01G002901' => 'mes', 'Manes.13G078050' => 'mes', 'Mapoly0014s0219' => 'mpo', 'Mapoly0113s0011' => 'mpo', 'MBI07_g19432_MAGBIO' => 'mbi', 'MBI07_g33104_MAGBIO' => 'mbi', 'MBI07_g43314_MAGBIO' => 'mbi', 'MBI07_g47060_MAGBIO' => 'mbi', 'MBI07_g47157_MAGBIO' => 'mbi', 'MCO11G433' => 'mco', 'MCO11G923' => 'mco', 'MD04G1023600' => 'mdo', 'MD15G1134700' => 'mdo', 'Medtr3g084800' => 'mtr', 'Medtr3g096640' => 'mtr', 'Medtr5g061930' => 'mtr', 'Medtr5g061940' => 'mtr', 'MELO3C006788.2' => 'cme', 'MELO3C009682.2' => 'cme', 'Migut.H00785' => 'egut', 'Migut.H00803' => 'egut', 'Migut.N00431' => 'egut', 'MSTRG.420' => 'ama', 'Nitab4.5_0000120g0160' => 'nta', 'Nitab4.5_0000120g0170' => 'nta', 'Nitab4.5_0000309g0290' => 'nta', 'Nitab4.5_0001277g0010' => 'nta', 'Nitab4.5_0001277g0020' => 'nta', 'Nitab4.5_0001277g0030' => 'nta', 'Nitab4.5_0001277g0040' => 'nta', 'Nitab4.5_0004869g0010' => 'nta', 'Nn1g08084' => 'nnu', 'Nn5g28440' => 'nnu', 'Oeu034295.1' => 'oeu', 'Oeu050090.2' => 'oeu', 'Os03g0165000' => 'osa', 'Os09g0500600' => 'osa', 'Peaxi162Scf00151g00065' => 'pax', 'Peaxi162Scf00151g00069' => 'pax', 'Peaxi162Scf00151g00610' => 'pax', 'Peaxi162Scf00286g00722' => 'pax', 'PGR102G1182' => 'pgr', 'PGR142G0868' => 'pgr', 'PGSC0003DMG401017464' => 'stu', 'PGSC0003DMG402016626' => 'stu', 'PGSC0003DMG402017464' => 'stu', 'Phvul.001G264300' => 'pvu', 'Phvul.009G154850' => 'pvu', 'Potri.005G067100' => 'ptr', 'Potri.014G148800' => 'ptr', 'Pp3c21_9710' => 'ppa', 'Pp3c8_22620' => 'ppa', 'Pp3s46_340' => 'ppa', 'Pp3s46_350' => 'ppa', 'PRCOL_00003192' => 'pco', 'Prupe.1G173400' => 'ppe', 'Prupe.1G173500' => 'ppe', 'Prupe.4G275500' => 'ppe', 'Psat5g060640' => 'psa', 'Psat5g097840' => 'psa', 'PSO063G4176' => 'pso', 'PSO170G3411' => 'pso', 'PSO384G2582' => 'pso', 'PSO443G0075' => 'pso', 'PSO541G4120' => 'pso', 'PSO782G2357' => 'pso', 'QL04p089617' => 'qlo', 'QL06p028465' => 'qlo', 'QL06p028482' => 'qlo', 'QL10p041326' => 'qlo', 'RcHm_v2.0_Chr2g0108981' => 'rch', 'RcHm_v2.0_Chr2g0122231' => 'rch', 'RcHm_v2.0_Chr4g0412031' => 'rch', 'RcHm_v2.0_Chr7g0229331' => 'rch', 'Rhsim09G0063400' => 'rsi', 'Rhsim10G0124100' => 'rsi', 'Rhsim10G0124200' => 'rsi', 'Sabra05G0055200' => 'sbr', 'Sabra09G0025500' => 'sbr', 'Sabra11G0021400' => 'sbr', 'Sabra14G0026900' => 'sbr', 'Sabra14G0091800' => 'sbr', 'Sabra14G0112200' => 'sbr', 'Sabra16G0195800' => 'sbr', 'SalBow3G0147' => 'sbo', 'SalBow3G3405' => 'sbo', 'Sc16g0009510' => 'sci', 'Sc19g0007480' => 'sci', 'Sed0005840' => 'sed', 'Sed0010212' => 'sed', 'SEGI_13382' => 'sgi', 'SEGI_15758' => 'sgi', 'SEGI_16368' => 'sgi', 'SEGI_24428' => 'sgi', 'SEGI_35171' => 'sgi', 'SEGI_40414' => 'sgi', 'SGA_v2.0_scaffold128G34129' => 'sas', 'SGA_v2.0_scaffold54G19590' => 'sas', 'SHI11490' => 'shi', 'SHI36070' => 'shi', 'SHI36071' => 'shi', 'SHI36072' => 'shi', 'SMO114G0082' => 'smo', 'SMO167G0077' => 'smo', 'SMO296G0032' => 'smo', 'SMO347G0440' => 'smo', 'Solyc05g014720.4' => 'sly', 'Solyc05g014730.1' => 'sly', 'Solyc05g014740.1' => 'sly', 'Solyc05g014750.2' => 'sly', 'Solyc09g097880.4' => 'sly', 'Sopen05g009910' => 'spe', 'Sopen09g035820' => 'spe', 'Sp2g26990' => 'spa', 'Sp4g14400' => 'spa', 'TAR365G1258' => 'tar', 'TAR376G0522' => 'tar', 'THA.LOC104800954' => 'tha', 'THA.LOC104818422' => 'tha', 'Thecc.01G137400' => 'tca', 'Thecc.04G190100' => 'tca', 'Thhalv10003618m.g' => 'esa', 'Thhalv10016222m.g' => 'esa', 'TPR.G18108' => 'tpr', 'TPR.G33581' => 'tpr', 'TWI63G1391' => 'twi', 'TWI79G1433' => 'twi', 'unitig_62.g23374' => 'ugi', 'unitig_62.g23375' => 'ugi', 'vmacro00426' => 'vma', 'vmacro00427' => 'vma', 'vmacro12743' => 'vma', 'vmacro12744' => 'vma', 'vmacro12745' => 'vma', 'VMungo1309G0220' => 'vmu', 'VMungo1383G0373' => 'vmu', 'Zm00001eb005010' => 'zma', 'Zm00001eb317420' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002182', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002182' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002182', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '307', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002182' ) ), 'genes' => array( 'A02p43050' => 'bna', 'A03p18020' => 'bna', 'A06p30540' => 'bna', 'Aa31LG1G17970' => 'aar', 'Aa31LG5G5010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2256' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5819' => 'aag', 'Actinidia20028' => 'ach', 'Actinidia20029' => 'ach', 'Actinidia20841' => 'ach', 'Actinidia20842' => 'ach', 'Actinidia35818' => 'ach', 'Ah.04g149650' => 'amhyb', 'Ah.06g191020' => 'amhyb', 'AL4G27360' => 'aly', 'AL8G41160' => 'aly', 'Aqoxy2G03986' => 'aox', 'Aqoxy5G02289' => 'aox', 'arahy.Tifrunner.gnm1.ann1.93YPU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5KUZ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RWIY1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVSB6Y' => 'arhy', 'AT2G32000' => 'ath', 'AT5G63920' => 'ath', 'ATR0686G038' => 'atr', 'ATR0686G228' => 'atr', 'ATR1001G007' => 'atr', 'Atru.chr3.1773' => 'acertr', 'Atru.chr4.980' => 'acertr', 'AUR62000512' => 'cqu', 'AUR62006857' => 'cqu', 'AUR62018514' => 'cqu', 'AUR62020905' => 'cqu', 'BcaB01g03999' => 'bca', 'BcaB07g29709' => 'bca', 'BcaB08g34438' => 'bca', 'BcaC01g02646' => 'bca', 'BcaC01g05921' => 'bca', 'BcaC03g18232' => 'bca', 'BolC1t01713H' => 'bol', 'BolC2t12375H' => 'bol', 'BolC3t14488H' => 'bol', 'BolC3t18503H' => 'bol', 'BraA02t09226Z' => 'bra', 'BraA03t11062Z' => 'bra', 'BraA03t15260Z' => 'bra', 'BraA06t26003Z' => 'bra', 'C01p17790' => 'bna', 'C02p63010' => 'bna', 'C02p63020' => 'bna', 'C03p21060' => 'bna', 'C04p33650' => 'bna', 'CAN.G1325.5' => 'can', 'CAN.G163.2' => 'can', 'CAN.G524.21' => 'can', 'CANSAT01G2275' => 'cansat', 'CANSAT78G1786' => 'cansat', 'CARHR125770' => 'chi', 'CARHR277840' => 'chi', 'Carub.0004s1334' => 'cru', 'Carub.0008s2470' => 'cru', 'Ca_16436_v3' => 'car', 'Ca_16971_v3' => 'car', 'Ca_16979_v3' => 'car', 'CBR_g21883' => 'cbr', 'CBR_g74' => 'cbr', 'CBR_g74987' => 'cbr', 'Cc03_g09640' => 'ccan', 'Cc07_g19240' => 'ccan', 'Cc07_g20290' => 'ccan', 'Cc07_g20300' => 'ccan', 'CDE05G0942' => 'cde', 'CDE09G0651' => 'cde', 'CDE09G0788' => 'cde', 'Cfa002178' => 'cfa', 'Cfa022087' => 'cfa', 'Ciclev10003112m.g' => 'ccl', 'Ciclev10005848m.g' => 'ccl', 'Ciclev10006835m.g' => 'ccl', 'Ciclev10007073m.g' => 'ccl', 'CiPaw.01G112100' => 'cil', 'CiPaw.04G079900' => 'cil', 'ClCG05G007130' => 'cla', 'ClCG10G017010' => 'cla', 'COL.COLO4_33656' => 'col', 'COL.COLO4_35815' => 'col', 'COL.COLO4_35972' => 'col', 'Cpa.g.c33573' => 'cpa', 'Cpa.g.sc157.4' => 'cpa', 'Cpa.g.sc37.4' => 'cpa', 'Cre17.g725100' => 'cre', 'CsaV3_3G015890' => 'csa', 'CsaV3_3G039390' => 'csa', 'CSS0000135' => 'camsi', 'CSS0003059' => 'camsi', 'CSS0026830' => 'camsi', 'CSS0039016' => 'camsi', 'CSS0041549' => 'camsi', 'CSS0042552' => 'camsi', 'DCAR_023889' => 'dca', 'DCAR_024119' => 'dca', 'Dinv32179' => 'din', 'Dinv35485' => 'din', 'Duzib106G1908' => 'dzi', 'Duzib212G0342' => 'dzi', 'Duzib212G0489' => 'dzi', 'Duzib264G0915' => 'dzi', 'ECA238G0923' => 'eca', 'ECA248G2894' => 'eca', 'EL10Ac3g07419' => 'bvu', 'EL10Ac4g09621' => 'bvu', 'Eucgr.H05141' => 'egr', 'Eucgr.L00646' => 'egr', 'Eucgr.L00648' => 'egr', 'FAN12G0184' => 'fan', 'FAN17G1163' => 'fan', 'FAN19G2097' => 'fan', 'FAN22G0833' => 'fan', 'FAN23G2071' => 'fan', 'FAN23G2830' => 'fan', 'FAN26G0537' => 'fan', 'FAN26G1134' => 'fan', 'FAN26G3457' => 'fan', 'FvH4_1g24710' => 'fve', 'FvH4_4g12750' => 'fve', 'Glyma.06G155600' => 'gma', 'Glyma.11G253100' => 'gma', 'Glyma.18G003850' => 'gma', 'Gohir.A10G131800' => 'ghi', 'Gohir.A11G057650' => 'ghi', 'Gohir.A11G057700' => 'ghi', 'Gohir.D10G135200' => 'ghi', 'Gohir.D11G061900' => 'ghi', 'Gorai.007G066700' => 'gra', 'Gorai.011G150100' => 'gra', 'GSVIVG01026459001' => 'vvi', 'GSVIVG01026461001' => 'vvi', 'GSVIVG01031636001' => 'vvi', 'HanXRQChr01g0016911' => 'han', 'HanXRQChr01g0016921' => 'han', 'HanXRQChr02g0037311' => 'han', 'HanXRQChr06g0165731' => 'han', 'HanXRQChr14g0436751' => 'han', 'HanXRQChr16g0517731' => 'han', 'HanXRQChr16g0517741' => 'han', 'Haze_11692' => 'cav', 'Haze_25328' => 'cav', 'Haze_25330' => 'cav', 'Haze_25331' => 'cav', 'Haze_26976' => 'cav', 'Haze_26984' => 'cav', 'Hma1.2p1_2528F.1_g323950' => 'hma', 'HPP92_005917' => 'vpl', 'HPP92_005922' => 'vpl', 'HPP92_005923' => 'vpl', 'HPP92_005924' => 'vpl', 'HPP92_011791' => 'vpl', 'Hund19029' => 'sun', 'Hund21801' => 'sun', 'Lalb_Chr11g0068591' => 'lal', 'Lalb_Chr23g0278251' => 'lal', 'Lj1g0008046' => 'lja', 'Lj4C830T7' => 'lonja', 'Lj6C377T0' => 'lonja', 'Lj6g0009713' => 'lja', 'Lju912A3T6' => 'lonja', 'Lju912C3T0' => 'lonja', 'Lsat_1_v5_gn_1_78841' => 'lsa', 'Lsat_1_v5_gn_2_49140' => 'lsa', 'Manes.01G002901' => 'mes', 'Manes.13G078050' => 'mes', 'Mapoly0014s0219' => 'mpo', 'Mapoly0113s0011' => 'mpo', 'MBI07_g19432_MAGBIO' => 'mbi', 'MBI07_g33104_MAGBIO' => 'mbi', 'MBI07_g43314_MAGBIO' => 'mbi', 'MBI07_g47060_MAGBIO' => 'mbi', 'MBI07_g47157_MAGBIO' => 'mbi', 'MCO11G433' => 'mco', 'MCO11G923' => 'mco', 'MD04G1023600' => 'mdo', 'MD15G1134700' => 'mdo', 'Medtr3g084800' => 'mtr', 'Medtr3g096640' => 'mtr', 'Medtr5g061930' => 'mtr', 'Medtr5g061940' => 'mtr', 'MELO3C006788.2' => 'cme', 'MELO3C009682.2' => 'cme', 'Migut.H00785' => 'egut', 'Migut.H00803' => 'egut', 'Migut.N00431' => 'egut', 'MSTRG.420' => 'ama', 'Nitab4.5_0000120g0160' => 'nta', 'Nitab4.5_0000120g0170' => 'nta', 'Nitab4.5_0000309g0290' => 'nta', 'Nitab4.5_0001277g0010' => 'nta', 'Nitab4.5_0001277g0020' => 'nta', 'Nitab4.5_0001277g0030' => 'nta', 'Nitab4.5_0001277g0040' => 'nta', 'Nitab4.5_0004869g0010' => 'nta', 'Nn1g08084' => 'nnu', 'Nn5g28440' => 'nnu', 'Oeu034295.1' => 'oeu', 'Oeu050090.2' => 'oeu', 'Os03g0165000' => 'osa', 'Os09g0500600' => 'osa', 'Peaxi162Scf00151g00065' => 'pax', 'Peaxi162Scf00151g00069' => 'pax', 'Peaxi162Scf00151g00610' => 'pax', 'Peaxi162Scf00286g00722' => 'pax', 'PGR102G1182' => 'pgr', 'PGR142G0868' => 'pgr', 'PGSC0003DMG401017464' => 'stu', 'PGSC0003DMG402016626' => 'stu', 'PGSC0003DMG402017464' => 'stu', 'Phvul.001G264300' => 'pvu', 'Phvul.009G154850' => 'pvu', 'Potri.005G067100' => 'ptr', 'Potri.014G148800' => 'ptr', 'Pp3c21_9710' => 'ppa', 'Pp3c8_22620' => 'ppa', 'Pp3s46_340' => 'ppa', 'Pp3s46_350' => 'ppa', 'PRCOL_00003192' => 'pco', 'Prupe.1G173400' => 'ppe', 'Prupe.1G173500' => 'ppe', 'Prupe.4G275500' => 'ppe', 'Psat5g060640' => 'psa', 'Psat5g097840' => 'psa', 'PSO063G4176' => 'pso', 'PSO170G3411' => 'pso', 'PSO384G2582' => 'pso', 'PSO443G0075' => 'pso', 'PSO541G4120' => 'pso', 'PSO782G2357' => 'pso', 'QL04p089617' => 'qlo', 'QL06p028465' => 'qlo', 'QL06p028482' => 'qlo', 'QL10p041326' => 'qlo', 'RcHm_v2.0_Chr2g0108981' => 'rch', 'RcHm_v2.0_Chr2g0122231' => 'rch', 'RcHm_v2.0_Chr4g0412031' => 'rch', 'RcHm_v2.0_Chr7g0229331' => 'rch', 'Rhsim09G0063400' => 'rsi', 'Rhsim10G0124100' => 'rsi', 'Rhsim10G0124200' => 'rsi', 'Sabra05G0055200' => 'sbr', 'Sabra09G0025500' => 'sbr', 'Sabra11G0021400' => 'sbr', 'Sabra14G0026900' => 'sbr', 'Sabra14G0091800' => 'sbr', 'Sabra14G0112200' => 'sbr', 'Sabra16G0195800' => 'sbr', 'SalBow3G0147' => 'sbo', 'SalBow3G3405' => 'sbo', 'Sc16g0009510' => 'sci', 'Sc19g0007480' => 'sci', 'Sed0005840' => 'sed', 'Sed0010212' => 'sed', 'SEGI_13382' => 'sgi', 'SEGI_15758' => 'sgi', 'SEGI_16368' => 'sgi', 'SEGI_24428' => 'sgi', 'SEGI_35171' => 'sgi', 'SEGI_40414' => 'sgi', 'SGA_v2.0_scaffold128G34129' => 'sas', 'SGA_v2.0_scaffold54G19590' => 'sas', 'SHI11490' => 'shi', 'SHI36070' => 'shi', 'SHI36071' => 'shi', 'SHI36072' => 'shi', 'SMO114G0082' => 'smo', 'SMO167G0077' => 'smo', 'SMO296G0032' => 'smo', 'SMO347G0440' => 'smo', 'Solyc05g014720.4' => 'sly', 'Solyc05g014730.1' => 'sly', 'Solyc05g014740.1' => 'sly', 'Solyc05g014750.2' => 'sly', 'Solyc09g097880.4' => 'sly', 'Sopen05g009910' => 'spe', 'Sopen09g035820' => 'spe', 'Sp2g26990' => 'spa', 'Sp4g14400' => 'spa', 'TAR365G1258' => 'tar', 'TAR376G0522' => 'tar', 'THA.LOC104800954' => 'tha', 'THA.LOC104818422' => 'tha', 'Thecc.01G137400' => 'tca', 'Thecc.04G190100' => 'tca', 'Thhalv10003618m.g' => 'esa', 'Thhalv10016222m.g' => 'esa', 'TPR.G18108' => 'tpr', 'TPR.G33581' => 'tpr', 'TWI63G1391' => 'twi', 'TWI79G1433' => 'twi', 'unitig_62.g23374' => 'ugi', 'unitig_62.g23375' => 'ugi', 'vmacro00426' => 'vma', 'vmacro00427' => 'vma', 'vmacro12743' => 'vma', 'vmacro12744' => 'vma', 'vmacro12745' => 'vma', 'VMungo1309G0220' => 'vmu', 'VMungo1383G0373' => 'vmu', 'Zm00001eb005010' => 'zma', 'Zm00001eb317420' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002182' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002182' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002182' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002182' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151