Gene: Sopen05g009910

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen05g009910
  • Transcript Identifier Sopen05g009910.2
  • Gene Type Coding gene
  • Location Spenn-ch05 : 9566001-9613670 : negative

Gene Family Information

  • ID HOM05D002182
  • #Genes/#Species 307/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen05g009910.2

Descriptions

  • Description Encodes topoisomerase 3alpha. Suppresses somatic crossovers. Essential for resolution of meiotic recombination intermediates. | topoisomerase 3alpha (TOP3A) | FUNCTIONS IN: DNA topoisomerase activity, DNA topoisomerase type I activity, DNA binding, zinc ion binding, nucleic acid binding | INVOLVED IN: in 7 processes | LOCATED IN: chromosome | EXPRESSED IN: 17 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: DNA topoisomerase, type IA, zn finger , DNA topoisomerase, type IA, core , DNA topoisomerase, type IA, domain 2 , DNA topoisomerase, type IA, DNA-binding , DNA topoisomerase, type IA, central , Zinc finger, GRF-type , DNA topoisomerase, type IA, central region, subdomain 3 , Toprim domain, subgroup , DNA topoisomerase, type IA, central region, subdomain 1 , Toprim domain , Zinc finger, CCHC-type | BEST Arabidopsis thaliana protein match is: DNA topoisomerase, type IA, core
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006265
IEA
InterProDNA topological change
GO:0006281
ISO
PLAZA Integrative OrthologyDNA repair AT5G63920
GO:0051321
ISO
PLAZA Integrative Orthologymeiotic cell cycle AT5G63920
GO:0000712
ISO
PLAZA Integrative Orthologyresolution of meiotic recombination intermediates AT5G63920
GO:0007059
ISO
PLAZA Integrative Orthologychromosome segregation AT5G63920
GO:0000278
ISO
PLAZA Integrative Orthologymitotic cell cycle AT5G63920

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0003916
IEA
InterProDNA topoisomerase activity
GO:0003676
IEA
InterPronucleic acid binding
GO:0008270
IEA
InterProzinc ion binding
GO:0003917
IEA
InterProDNA topoisomerase type I (single strand cut, ATP-independent) activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005694
IEA
InterProchromosome

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013497 DNA topoisomerase, type IA, central
IPR013498 DNA topoisomerase, type IA, zn finger
IPR006171 TOPRIM domain
IPR003602 DNA topoisomerase, type IA, DNA-binding domain
IPR023405 DNA topoisomerase, type IA, core domain
IPR036875 Zinc finger, CCHC-type superfamily
IPR001878 Zinc finger, CCHC-type
IPR010666 Zinc finger, GRF-type
IPR013826 DNA topoisomerase, type IA, central region, subdomain 3
IPR013824 DNA topoisomerase, type IA, central region, subdomain 1
IPR034144 DNA topoisomerase 3-like, TOPRIM domain
IPR003601 DNA topoisomerase, type IA, domain 2
IPR013825 DNA topoisomerase, type IA, central region, subdomain 2
IPR000380 DNA topoisomerase, type IA
Mapman id Description
13.3.5.5.3.2 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.RTR Holliday junction dissolution complex.topoisomerase component TOP3-alpha