Gene: Pp3c8_22620
General Information
Structural Information
- Species Physcomitrium patens
- Gene Identifier Pp3c8_22620
- Transcript Identifier Pp3c8_22620V3.3
- Gene Type Coding gene
- Location Chr08 : 15626265-15632711 : positive
Gene Family Information
- ID HOM05D002182
- #Genes/#Species 307/100
- Phylogenetic origin
- ID ORTHO05D008382
- #Genes/#Species 120/95
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- name Pp3c8_22620V3.3
- pacid 32964656
- alias Phpat.008G085300
- alias Pp1s474_3V6
- alias Phypa_228008
- uniprot A9U3N3
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006265 | IBA IEA | GOA Database | DNA topological change | |
| GO:0006265 | IEA | InterPro | DNA topological change |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0003917 | IEA | GOA Database | DNA topoisomerase type I (single strand cut, ATP-independent) activity | |
| GO:0003917 | IEA | InterPro | DNA topoisomerase type I (single strand cut, ATP-independent) activity | |
| GO:0003916 | IBA IEA | GOA Database | DNA topoisomerase activity | |
| GO:0003916 | IEA | InterPro | DNA topoisomerase activity | |
| GO:0016853 | IEA | GOA Database | isomerase activity | |
| GO:0003729 | IEA | GOA Database | mRNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IBA | GOA Database | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR000380 | DNA topoisomerase, type IA |
| IPR013826 | DNA topoisomerase, type IA, central region, subdomain 3 |
| IPR023405 | DNA topoisomerase, type IA, core domain |
| IPR013824 | DNA topoisomerase, type IA, central region, subdomain 1 |
| IPR013497 | DNA topoisomerase, type IA, central |
| IPR034144 | DNA topoisomerase 3-like, TOPRIM domain |
| IPR003602 | DNA topoisomerase, type IA, DNA-binding domain |
| IPR003601 | DNA topoisomerase, type IA, domain 2 |
| IPR013825 | DNA topoisomerase, type IA, central region, subdomain 2 |
| IPR006171 | TOPRIM domain |
| Mapman id | Description |
|---|---|
| 12.3.4.3.2 | Chromatin organisation.post-translational histone modification.histone arginine methylation.TDRD3-TOP3B methyl-arginine reader complex.topoisomerase component TOP3b |
| 15.3.6.2.3 | RNA biosynthesis.RNA polymerase II-dependent transcription.transcription termination.R-loop removal.type-1A topoisomerase (TOP3b) |