Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400012761 Solanum tuberosum HOM05D004484 ORTHO05D005370 0.0e+00 1397.5 711 100.0
Sopen01g037090 Solanum pennellii HOM05D004484 ORTHO05D005370 0.0e+00 1314.3 711 94.2
Solyc01g091350.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 0.0e+00 1313.9 711 94.2
CAN.G388.13 Capsicum annuum HOM05D004484 ORTHO05D005370 0.0e+00 1289.6 707 91.7
Nitab4.5_0000457g0330 Nicotiana tabacum HOM05D004484 ORTHO05D005370 0.0e+00 1262.7 712 89.9
Peaxi162Scf00021g01723 Petunia axillaris HOM05D004484 ORTHO05D005370 0.0e+00 1230.3 712 87.1
Nitab4.5_0005372g0070 Nicotiana tabacum HOM05D004484 ORTHO05D005370 0.0e+00 1223.8 722 86.6
Cc02_g36700 Coffea canephora HOM05D004484 ORTHO05D005370 4.5e-308 1060.8 687 76.1
Oeu055487.1 Olea europaea HOM05D004484 ORTHO05D005370 3.8e-307 1057.7 692 75.9
Dinv32377 Davidia involucrata HOM05D004484 ORTHO05D005370 3.0e-304 1048.1 687 75.3
MSTRG.20748 Avicennia marina HOM05D004484 ORTHO05D005370 6.3e-294 1013.8 685 74.2
Lj7A528T57 Lonicera japonica HOM05D004484 ORTHO05D005370 5.3e-293 1010.7 694 72.9
Migut.B01635 Erythranthe guttata HOM05D004484 ORTHO05D005370 9.1e-293 1010.0 686 74.3
SGA_v2.0_scaffold153G37012 Striga asiatica HOM05D004484 ORTHO05D005370 1.0e-288 996.5 691 72.1
CiPaw.01G262000 Carya illinoinensis HOM05D004484 ORTHO05D005370 4.4e-287 991.1 687 70.3
ECA234G1700 Erigeron canadensis HOM05D004484 ORTHO05D005370 1.3e-286 989.6 691 71.5
Hma1.2p1_0086F.1_g044870 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 2.8e-286 988.4 682 71.8
QL08p052472 Quercus lobata HOM05D004484 ORTHO05D005370 1.1e-285 986.5 687 70.7
Eucgr.E01418 Eucalyptus grandis HOM05D004484 ORTHO05D005370 2.2e-283 978.8 686 70.4
CSS0036976 Camellia sinensis var. sinensis HOM05D004484 ORTHO05D005370 1.6e-281 972.6 692 71.7
Potri.014G069700 Populus trichocarpa HOM05D004484 ORTHO05D005370 4.7e-281 971.1 688 70.9
HanXRQChr16g0520161 Helianthus annuus HOM05D004484 ORTHO05D005370 2.3e-280 968.8 691 69.6
Sc02g0002590 Simmondsia chinensis HOM05D004484 ORTHO05D005370 3.0e-280 968.4 672 70.2
TWI23G0227 Tripterygium wilfordii HOM05D004484 ORTHO05D005370 1.2e-279 966.5 687 70.6
Nn1g01233 Nelumbo nucifera HOM05D004484 ORTHO05D005370 2.6e-279 965.3 685 68.9
Prupe.2G145600 Prunus persica HOM05D004484 ORTHO05D005370 2.6e-279 965.3 687 69.0
Sed0020955 Sechium edule HOM05D004484 ORTHO05D005370 1.3e-278 963.0 702 67.5
DCAR_015907 Daucus carota HOM05D004484 ORTHO05D005370 2.8e-278 961.8 687 68.9
Haze_16815 Corylus avellana HOM05D004484 ORTHO05D005370 4.8e-278 961.1 742 64.7
GSVIVG01027610001 Vitis vinifera HOM05D004484 ORTHO05D005370 1.8e-277 959.1 670 70.9
PSO478G5008 Papaver somniferum HOM05D004484 ORTHO05D005370 2.4e-277 958.7 690 69.1
Atru.chr5.309 Acer truncatum HOM05D004484 ORTHO05D005370 7.0e-277 957.2 683 69.0
MD07G1121000 Malus domestica HOM05D004484 ORTHO05D005370 1.2e-276 956.4 687 69.7
ClCG05G002220 Citrullus lanatus HOM05D004484 ORTHO05D005370 1.6e-276 956.1 687 69.1
Aqoxy5G00403 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 5.9e-276 954.1 687 69.0
Ca_19886_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 2.5e-274 948.7 686 68.5
Lsat_1_v5_gn_4_43240 Lactuca sativa HOM05D004484 ORTHO05D005370 4.2e-274 948.0 687 69.4
TAR629G2468 Trochodendron aralioides HOM05D004484 ORTHO05D005370 4.2e-274 948.0 670 69.4
CANSAT56G4533 Cannabis sativa HOM05D004484 ORTHO05D005370 2.1e-273 945.7 687 68.0
vmacro13399 Vaccinium macrocarpon HOM05D004484 ORTHO05D005370 3.6e-273 944.9 687 69.4
CsaV3_3G009680 Cucumis sativus L. HOM05D004484 ORTHO05D005370 1.0e-272 943.3 693 66.7
Manes.01G265900 Manihot esculenta HOM05D004484 ORTHO05D005370 4.4e-271 937.9 686 67.8
CANSAT56G1200 Cannabis sativa HOM05D004484 ORTHO05D005370 5.7e-271 937.6 687 67.4
Lalb_Chr13g0291731 Lupinus albus HOM05D004484 ORTHO05D005370 5.7e-271 937.6 686 67.2
EL10Ac1g00900 Beta vulgaris HOM05D004484 ORTHO05D005370 2.2e-270 935.6 702 64.1
Ca_27059_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 8.3e-270 933.7 686 67.6
Medtr4g023560 Medicago truncatula HOM05D004484 ORTHO05D005370 1.4e-269 932.9 686 67.2
Thecc.01G376200 Theobroma cacao HOM05D004484 ORTHO05D005370 3.5e-268 928.3 687 65.6
FvH4_7g11900 Fragaria vesca HOM05D004484 ORTHO05D005370 1.7e-267 926.0 687 66.1
Lj3g0013484 Lotus japonicus HOM05D004484 ORTHO05D005370 1.5e-266 922.9 687 66.7
FAN01G0628 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.9e-266 922.5 687 65.8
MBI12_g10758_MAGBIO Magnolia biondii HOM05D004484 ORTHO05D005370 1.9e-266 922.5 721 64.9
arahy.Tifrunner.gnm1.ann1.6K85L9 Arachis hypogaea HOM05D004484 ORTHO05D005370 9.5e-266 920.2 686 67.5
arahy.Tifrunner.gnm1.ann1.HW1IVJ Arachis hypogaea HOM05D004484 ORTHO05D005370 9.5e-266 920.2 686 67.5
arahy.Tifrunner.gnm1.ann1.V1M046 Arachis hypogaea HOM05D004484 ORTHO05D005370 9.5e-266 920.2 686 67.3
FAN06G1787 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.1e-265 919.1 687 65.9
arahy.Tifrunner.gnm1.ann1.Q9SWB6 Arachis hypogaea HOM05D004484 ORTHO05D005370 3.6e-265 918.3 686 67.2
FAN10G1483 Fragaria x ananassa HOM05D004484 ORTHO05D005370 4.7e-265 917.9 687 65.8
PGR042G0667 Punica granatum HOM05D004484 ORTHO05D005370 6.1e-265 917.5 688 65.6
FAN06G3319 Fragaria x ananassa HOM05D004484 ORTHO05D005370 8.0e-265 917.1 687 65.6
FAN10G2369 Fragaria x ananassa HOM05D004484 ORTHO05D005370 8.0e-265 917.1 687 65.8
Cpa.g.sc18.115 Carica papaya HOM05D004484 ORTHO05D005370 8.9e-264 913.7 685 66.1
AUR62004221 Chenopodium quinoa HOM05D004484 ORTHO05D005370 1.2e-263 913.3 716 63.5
Psat7g233440 Pisum sativum HOM05D004484 ORTHO05D005370 4.9e-262 907.9 686 64.7
MELO3C006188.2 Cucumis melo HOM05D004484 ORTHO05D005370 6.4e-262 907.5 658 67.6
Sabra14G0049400 Salix brachista HOM05D004484 ORTHO05D005370 3.2e-261 905.2 702 66.0
Lalb_Chr12g0208261 Lupinus albus HOM05D004484 ORTHO05D005370 2.0e-260 902.5 686 65.2
Ciclev10019016m.g Citrus clementina HOM05D004484 ORTHO05D005370 1.9e-258 896.0 687 65.5
Glyma.05G125700 Glycine max HOM05D004484 ORTHO05D005370 2.1e-257 892.5 687 65.5
Ah.13g073490 Amaranthus hybridus HOM05D004484 ORTHO05D005370 1.7e-254 882.9 711 61.5
Phvul.002G205800 Phaseolus vulgaris HOM05D004484 ORTHO05D005370 8.3e-254 880.6 683 64.6
Aqoxy3G02138 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 7.1e-253 877.5 686 63.7
Gorai.007G091100 Gossypium raimondii HOM05D004484 ORTHO05D005370 3.9e-251 871.7 688 62.1
Gohir.A11G080700 Gossypium hirsutum HOM05D004484 ORTHO05D005370 1.5e-250 869.8 688 61.9
VMungo0251G1206 Vigna mungo HOM05D004484 ORTHO05D005370 2.5e-250 869.0 682 63.2
Gohir.D11G085300 Gossypium hirsutum HOM05D004484 ORTHO05D005370 5.6e-250 867.8 688 61.9
THA.LOC104817247 Tarenaya hassleriana HOM05D004484 ORTHO05D005370 7.8e-244 847.4 687 61.1
Cfa001721 Carpinus fangiana HOM05D004484 ORTHO05D005370 2.6e-239 832.4 588 69.2
AT1G48050 Arabidopsis thaliana HOM05D004484 ORTHO05D005370 9.9e-239 830.5 689 59.5
BcaB04g17469 Brassica carinata HOM05D004484 ORTHO05D005370 9.9e-239 830.5 694 59.2
TPR.G9845 Trifolium pratense HOM05D004484 ORTHO05D005370 9.9e-239 830.5 720 58.9
FAN03G1897 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.2e-238 829.3 689 61.2
Sp1g35020 Schrenkiella parvula HOM05D004484 ORTHO05D005370 2.2e-238 829.3 680 59.0
Carub.0001s3716 Capsella rubella HOM05D004484 ORTHO05D005370 3.8e-238 828.6 689 59.2
GSVIVG01027609001 Vitis vinifera HOM05D004484 ORTHO05D005370 3.8e-238 828.6 656 64.8
BcaC07g37180 Brassica carinata HOM05D004484 ORTHO05D005370 4.2e-237 825.1 690 59.1
C08p05620 Brassica napus HOM05D004484 ORTHO05D005370 1.6e-236 823.2 684 59.1
BolC8t47375H Brassica oleracea HOM05D004484 ORTHO05D005370 2.7e-236 822.4 684 59.1
BraSC267t45947Z Brassica rapa HOM05D004484 ORTHO05D005370 3.5e-236 822.0 684 58.5
CARHR037700 Cardamine hirsuta HOM05D004484 ORTHO05D005370 1.9e-234 816.2 687 58.8
A08p05330 Brassica napus HOM05D004484 ORTHO05D005370 6.2e-233 811.2 670 59.4
AUR62013627 Chenopodium quinoa HOM05D004484 ORTHO05D005370 1.1e-232 810.4 700 59.0
AL1G54570 Arabidopsis lyrata HOM05D004484 ORTHO05D005370 4.4e-231 805.1 671 59.3
SHI13523 Sapria himalayana HOM05D004484 ORTHO05D005370 4.9e-230 801.6 663 62.1
Hund27347 Selenicereus undatus HOM05D004484 ORTHO05D005370 1.8e-224 783.1 602 65.4
Zm00001eb064930 Zea mays HOM05D004484 ORTHO05D005370 1.1e-221 773.9 673 58.7
HPP92_027818 Vanilla planifolia HOM05D004484 ORTHO05D005370 1.5e-215 753.4 690 56.5
COL.COLO4_07018 Corchorus olitorius HOM05D004484 ORTHO05D005370 2.9e-214 749.2 555 66.5
unitig_749.g13780 Utricularia gibba HOM05D004484 ORTHO05D005370 6.2e-209 731.5 571 65.5
arahy.Tifrunner.gnm1.ann1.5WGS6V Arachis hypogaea HOM05D004484 ORTHO05D005370 1.9e-197 693.3 661 55.8
arahy.Tifrunner.gnm1.ann1.03ZR4A Arachis hypogaea HOM05D004484 ORTHO05D005370 3.2e-197 692.6 704 53.1
COL.COLO4_12548 Corchorus olitorius HOM05D004484 ORTHO05D005370 5.9e-191 671.8 710 49.7
Potri.002G148200 Populus trichocarpa HOM05D004484 ORTHO05D005370 5.0e-190 668.7 492 67.7
Hma1.2p1_0086F.1_g044880 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 7.9e-188 661.4 454 72.9
arahy.Tifrunner.gnm1.ann1.5492A7 Arachis hypogaea HOM05D004484 ORTHO05D005370 2.3e-187 659.8 674 53.6
Pp3c22_11100 Physcomitrium patens HOM05D004484 ORTHO05D005370 9.7e-186 654.4 714 47.9
Lj9C569T11 Lonicera japonica HOM05D004484 ORTHO05D005370 1.2e-183 647.5 466 67.8
Thhalv10011351m.g Eutrema salsugineum HOM05D004484 ORTHO05D005370 4.7e-180 635.6 656 51.1
arahy.Tifrunner.gnm1.ann1.T9R8PC Arachis hypogaea HOM05D004484 ORTHO05D005370 3.0e-179 632.9 683 51.1
ATR0049G077 Amborella trichopoda HOM05D004484 ORTHO05D005370 3.1e-176 622.9 458 64.8
Aa31LG10G5650 Aethionema arabicum HOM05D004484 ORTHO05D005370 2.2e-174 616.7 582 54.8
SMO367G0514 Selaginella moellendorffii HOM05D004484 ORTHO05D005370 2.7e-172 609.8 705 46.1
CDE04G3156 Ceratophyllum demersum HOM05D004484 ORTHO05D005370 1.2e-170 604.4 671 48.3
Mapoly0129s0012 Marchantia polymorpha HOM05D004484 ORTHO05D005370 9.4e-165 584.7 632 47.2
PGR119G1536 Punica granatum HOM05D004484 ORTHO05D005370 1.6e-159 567.4 516 56.6
RcHm_v2.0_Chr1g0350581 Rosa chinensis HOM05D004484 ORTHO05D005370 5.7e-154 548.9 381 69.0
AagrBONN_evm.TU.Sc2ySwM_368.3373 Anthoceros agrestis HOM05D004484 ORTHO05D005370 1.0e-142 511.5 687 40.0
CBR_g30081 Chara braunii HOM05D004484 ORTHO05D005370 1.2e-114 418.3 541 41.2
RcHm_v2.0_Chr1g0350571 Rosa chinensis HOM05D004484 ORTHO05D005370 1.8e-102 377.9 305 63.6
SHI38996 Sapria himalayana HOM05D004484 ORTHO05D005370 5.1e-86 323.2 204 76.5
Hma1.2p1_0701F.1_g205850 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 9.7e-77 292.4 268 60.1
SHI38095 Sapria himalayana HOM05D004484 ORTHO05D005370 2.4e-75 287.7 190 72.6
SHI38094 Sapria himalayana HOM05D004484 ORTHO05D005370 7.5e-61 239.6 211 57.8
arahy.Tifrunner.gnm1.ann1.47H85H Arachis hypogaea HOM05D004484 ORTHO05D005370 7.0e-59 233.0 334 41.9
Glyma.06G243967 Glycine max HOM05D004484 ORTHO05D005370 2.3e-54 218.0 144 70.8
Glyma.01G142851 Glycine max HOM05D004484 ORTHO05D005370 2.9e-49 201.1 164 61.0
Solyc01g091430.2 Solanum lycopersicum HOM05D004484 ORTHO05D005370 8.5e-49 199.5 115 87.0
CAN.G594.7 Capsicum annuum HOM05D004484 ORTHO05D005370 9.8e-45 186.0 107 85.0
MCO15G158 Micromonas commoda HOM05D004484 ORTHO05D005370 3.7e-44 184.1 522 29.1
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 7.0e-43 179.9 267 41.9
SEGI_20047 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 9.2e-43 179.5 246 39.8
Hma1.2p1_0170F.1_g075250 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 2.9e-41 174.5 202 52.0
Glyma.17G005802 Glycine max HOM05D004484 ORTHO05D005370 2.5e-40 171.4 192 54.7
CAN.G205.22 Capsicum annuum HOM05D004484 ORTHO05D005370 1.2e-37 162.5 96 81.2
SHI38995 Sapria himalayana HOM05D004484 ORTHO05D005370 1.7e-36 158.7 126 63.5
SEGI_29754 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 8.3e-36 156.4 116 64.7
SGA_v2.0_scaffold65G22170 Striga asiatica HOM05D004484 ORTHO05D005370 9.2e-35 152.9 201 44.3
CAN.G388.14 Capsicum annuum HOM05D004484 ORTHO05D005370 3.5e-34 151.0 150 56.0
TPR.G22633 Trifolium pratense HOM05D004484 ORTHO05D005370 2.3e-33 148.3 92 76.1
QL08p052505 Quercus lobata HOM05D004484 ORTHO05D005370 6.2e-31 140.2 174 46.6
Os03g0856200 Oryza sativa ssp. japonica HOM05D004484 ORTHO05D005370 3.1e-30 137.9 97 64.9
Eucgr.I00725 Eucalyptus grandis HOM05D004484 ORTHO05D005370 4.1e-27 127.5 82 74.4
Aa31LG10G5660 Aethionema arabicum HOM05D004484 ORTHO05D005370 2.7e-26 124.8 94 59.6
CAN.G279.6 Capsicum annuum HOM05D004484 ORTHO05D005370 6.0e-26 123.6 72 84.7
Solyc01g091440.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 1.8e-22 112.1 133 52.6
SGA_v2.0_scaffold10G05342 Striga asiatica HOM05D004484 ORTHO05D005370 1.5e-21 109.0 191 38.2
SGA_v2.0_scaffold172G39032 Striga asiatica HOM05D004484 ORTHO05D005370 2.9e-20 104.8 168 41.7
SGA_v2.0_scaffold29G12247 Striga asiatica HOM05D004484 ORTHO05D005370 1.2e-18 99.4 186 38.2
CAN.G321.48 Capsicum annuum HOM05D001267 ORTHO05D002376 6.0e-18 97.1 64 78.1
PRCOL_00002704 Prasinoderma coloniale HOM05D004484 ORTHO05D005370 6.0e-18 97.1 254 32.7
Glyma.06G243934 Glycine max HOM05D004484 ORTHO05D005370 1.2e-13 82.8 81 49.4
Glyma.06G244302 Glycine max HOM05D004484 ORTHO05D005370 3.4e-13 81.3 134 39.6
Eucgr.E01421 Eucalyptus grandis HOM05D004484 ORTHO05D005370 3.8e-12 77.8 62 61.3
TPR.G9848 Trifolium pratense HOM05D000164 ORTHO05D000096 1.1e-11 76.3 55 60.0
Eucgr.L02075 Eucalyptus grandis HOM05D004484 ORTHO05D005370 4.1e-11 74.3 62 59.7
arahy.Tifrunner.gnm1.ann1.0F06NC Arachis hypogaea HOM05D004484 ORTHO05D005370 1.2e-10 72.8 47 68.1
Oeu032522.1 Olea europaea HOM05D004484 ORTHO05D005370 3.5e-10 71.2 70 54.3
AagrBONN_evm.TU.Sc2ySwM_368.3370 Anthoceros agrestis HOM05D004484 ORTHO05D005370 8.6e-09 66.6 111 35.1
Cre10.g423800 Chlamydomonas reinhardtii HOM05D004484 ORTHO05D005370 4.3e-08 64.3 556 22.3
Hma1.2p1_1470F.1_g285600 Hydrangea macrophylla HOM05D000467 ORTHO05D011800 8.1e-07 60.1 52 57.7


User provided reference genes

Program Settings