Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu055487.1 Olea europaea HOM05D004484 ORTHO05D005370 0.0e+00 1365.9 689 100.0
Nitab4.5_0000457g0330 Nicotiana tabacum HOM05D004484 ORTHO05D005370 0.0e+00 1087.4 692 77.5
Cc02_g36700 Coffea canephora HOM05D004484 ORTHO05D005370 0.0e+00 1080.5 688 77.6
Dinv32377 Davidia involucrata HOM05D004484 ORTHO05D005370 4.7e-310 1067.4 691 77.0
PGSC0003DMG400012761 Solanum tuberosum HOM05D004484 ORTHO05D005370 8.8e-309 1063.1 692 75.9
Peaxi162Scf00021g01723 Petunia axillaris HOM05D004484 ORTHO05D005370 3.3e-308 1061.2 692 75.7
SGA_v2.0_scaffold153G37012 Striga asiatica HOM05D004484 ORTHO05D005370 4.4e-308 1060.8 689 75.5
MSTRG.20748 Avicennia marina HOM05D004484 ORTHO05D005370 4.8e-307 1057.4 688 76.2
CAN.G388.13 Capsicum annuum HOM05D004484 ORTHO05D005370 3.1e-306 1054.7 688 75.3
Migut.B01635 Erythranthe guttata HOM05D004484 ORTHO05D005370 7.7e-305 1050.0 690 76.2
Solyc01g091350.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 4.7e-302 1040.8 692 74.3
Sopen01g037090 Solanum pennellii HOM05D004484 ORTHO05D005370 1.1e-300 1036.2 692 73.8
Nitab4.5_0005372g0070 Nicotiana tabacum HOM05D004484 ORTHO05D005370 2.0e-300 1035.4 702 74.1
Lj7A528T57 Lonicera japonica HOM05D004484 ORTHO05D005370 2.6e-300 1035.0 700 75.0
ECA234G1700 Erigeron canadensis HOM05D004484 ORTHO05D005370 3.7e-299 1031.2 685 73.9
CiPaw.01G262000 Carya illinoinensis HOM05D004484 ORTHO05D005370 2.6e-297 1025.0 689 72.3
QL08p052472 Quercus lobata HOM05D004484 ORTHO05D005370 7.7e-297 1023.5 687 73.7
Hma1.2p1_0086F.1_g044870 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 3.8e-296 1021.1 686 75.9
GSVIVG01027610001 Vitis vinifera HOM05D004484 ORTHO05D005370 1.8e-293 1012.3 674 74.5
Nn1g01233 Nelumbo nucifera HOM05D004484 ORTHO05D005370 5.2e-293 1010.7 683 72.6
CSS0036976 Camellia sinensis var. sinensis HOM05D004484 ORTHO05D005370 3.4e-292 1008.1 694 74.5
Prupe.2G145600 Prunus persica HOM05D004484 ORTHO05D005370 3.7e-291 1004.6 688 72.7
Haze_16815 Corylus avellana HOM05D004484 ORTHO05D005370 4.8e-291 1004.2 747 67.9
MD07G1121000 Malus domestica HOM05D004484 ORTHO05D005370 1.1e-290 1003.0 688 73.1
TWI23G0227 Tripterygium wilfordii HOM05D004484 ORTHO05D005370 2.0e-289 998.8 687 72.1
DCAR_015907 Daucus carota HOM05D004484 ORTHO05D005370 2.9e-288 995.0 689 71.0
Eucgr.E01418 Eucalyptus grandis HOM05D004484 ORTHO05D005370 6.5e-288 993.8 688 71.4
HanXRQChr16g0520161 Helianthus annuus HOM05D004484 ORTHO05D005370 1.1e-287 993.0 688 71.4
PSO478G5008 Papaver somniferum HOM05D004484 ORTHO05D005370 1.5e-287 992.6 689 71.4
Potri.014G069700 Populus trichocarpa HOM05D004484 ORTHO05D005370 1.5e-287 992.6 688 71.8
Aqoxy5G00403 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 3.2e-287 991.5 690 70.9
TAR629G2468 Trochodendron aralioides HOM05D004484 ORTHO05D005370 1.2e-286 989.6 670 72.5
Ca_19886_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 5.2e-285 984.2 689 70.8
Manes.01G265900 Manihot esculenta HOM05D004484 ORTHO05D005370 2.0e-284 982.2 689 70.4
Sed0020955 Sechium edule HOM05D004484 ORTHO05D005370 2.8e-283 978.4 689 69.8
Atru.chr5.309 Acer truncatum HOM05D004484 ORTHO05D005370 3.7e-283 978.0 688 70.5
Lalb_Chr13g0291731 Lupinus albus HOM05D004484 ORTHO05D005370 1.6e-281 972.6 689 69.8
Sc02g0002590 Simmondsia chinensis HOM05D004484 ORTHO05D005370 2.0e-281 972.2 672 72.0
ClCG05G002220 Citrullus lanatus HOM05D004484 ORTHO05D005370 5.0e-280 967.6 689 70.0
Lsat_1_v5_gn_4_43240 Lactuca sativa HOM05D004484 ORTHO05D005370 8.6e-280 966.8 684 70.3
CANSAT56G4533 Cannabis sativa HOM05D004484 ORTHO05D005370 3.3e-279 964.9 691 69.8
Medtr4g023560 Medicago truncatula HOM05D004484 ORTHO05D005370 1.6e-278 962.6 688 69.2
Ca_27059_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 1.8e-277 959.1 689 69.4
CANSAT56G1200 Cannabis sativa HOM05D004484 ORTHO05D005370 5.2e-277 957.6 691 69.2
FvH4_7g11900 Fragaria vesca HOM05D004484 ORTHO05D005370 2.0e-276 955.7 688 68.9
CsaV3_3G009680 Cucumis sativus L. HOM05D004484 ORTHO05D005370 2.6e-276 955.3 689 68.4
Cpa.g.sc18.115 Carica papaya HOM05D004484 ORTHO05D005370 3.4e-276 954.9 691 68.2
PGR042G0667 Punica granatum HOM05D004484 ORTHO05D005370 5.7e-276 954.1 691 68.0
vmacro13399 Vaccinium macrocarpon HOM05D004484 ORTHO05D005370 5.7e-276 954.1 690 71.2
FAN01G0628 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.7e-275 952.6 688 68.6
Psat7g233440 Pisum sativum HOM05D004484 ORTHO05D005370 3.7e-275 951.4 688 68.5
Ciclev10019016m.g Citrus clementina HOM05D004484 ORTHO05D005370 4.9e-275 951.0 692 69.2
Lj3g0013484 Lotus japonicus HOM05D004484 ORTHO05D005370 4.9e-275 951.0 685 69.3
MBI12_g10758_MAGBIO Magnolia biondii HOM05D004484 ORTHO05D005370 1.1e-274 949.9 721 66.6
Thecc.01G376200 Theobroma cacao HOM05D004484 ORTHO05D005370 1.1e-274 949.9 692 67.5
FAN10G1483 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.2e-273 946.4 688 68.6
FAN06G3319 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.6e-273 946.0 688 68.5
FAN06G1787 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.0e-273 945.7 688 68.6
FAN10G2369 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.3e-272 943.0 688 68.5
arahy.Tifrunner.gnm1.ann1.6K85L9 Arachis hypogaea HOM05D004484 ORTHO05D005370 5.2e-269 931.0 687 67.8
arahy.Tifrunner.gnm1.ann1.HW1IVJ Arachis hypogaea HOM05D004484 ORTHO05D005370 5.2e-269 931.0 687 67.8
arahy.Tifrunner.gnm1.ann1.V1M046 Arachis hypogaea HOM05D004484 ORTHO05D005370 5.2e-269 931.0 687 67.7
Aqoxy3G02138 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 3.4e-268 928.3 687 67.8
EL10Ac1g00900 Beta vulgaris HOM05D004484 ORTHO05D005370 3.4e-268 928.3 710 64.6
Lalb_Chr12g0208261 Lupinus albus HOM05D004484 ORTHO05D005370 5.8e-268 927.5 689 66.5
Sabra14G0049400 Salix brachista HOM05D004484 ORTHO05D005370 5.8e-268 927.5 702 67.0
arahy.Tifrunner.gnm1.ann1.Q9SWB6 Arachis hypogaea HOM05D004484 ORTHO05D005370 1.3e-267 926.4 687 67.2
Gohir.A11G080700 Gossypium hirsutum HOM05D004484 ORTHO05D005370 3.2e-266 921.8 688 65.7
MELO3C006188.2 Cucumis melo HOM05D004484 ORTHO05D005370 9.2e-266 920.2 654 68.8
Gorai.007G091100 Gossypium raimondii HOM05D004484 ORTHO05D005370 9.2e-266 920.2 688 65.4
Glyma.05G125700 Glycine max HOM05D004484 ORTHO05D005370 6.0e-265 917.5 689 67.1
Gohir.D11G085300 Gossypium hirsutum HOM05D004484 ORTHO05D005370 7.8e-265 917.1 688 65.4
AUR62004221 Chenopodium quinoa HOM05D004484 ORTHO05D005370 2.3e-264 915.6 721 64.4
Phvul.002G205800 Phaseolus vulgaris HOM05D004484 ORTHO05D005370 3.0e-264 915.2 685 66.6
VMungo0251G1206 Vigna mungo HOM05D004484 ORTHO05D005370 2.9e-259 898.7 684 65.2
Ah.13g073490 Amaranthus hybridus HOM05D004484 ORTHO05D005370 5.8e-252 874.4 715 62.1
Cfa001721 Carpinus fangiana HOM05D004484 ORTHO05D005370 4.9e-251 871.3 585 73.8
TPR.G9845 Trifolium pratense HOM05D004484 ORTHO05D005370 1.2e-249 866.7 719 62.3
AT1G48050 Arabidopsis thaliana HOM05D004484 ORTHO05D005370 1.7e-248 862.8 691 61.5
THA.LOC104817247 Tarenaya hassleriana HOM05D004484 ORTHO05D005370 2.3e-248 862.4 690 62.0
BcaB04g17469 Brassica carinata HOM05D004484 ORTHO05D005370 2.5e-247 859.0 691 60.5
FAN03G1897 Fragaria x ananassa HOM05D004484 ORTHO05D005370 7.3e-247 857.4 690 64.2
BcaC07g37180 Brassica carinata HOM05D004484 ORTHO05D005370 1.2e-246 856.7 692 60.3
BraSC267t45947Z Brassica rapa HOM05D004484 ORTHO05D005370 2.1e-246 855.9 686 59.9
Carub.0001s3716 Capsella rubella HOM05D004484 ORTHO05D005370 8.1e-246 854.0 686 60.6
Sp1g35020 Schrenkiella parvula HOM05D004484 ORTHO05D005370 1.8e-245 852.8 676 60.4
C08p05620 Brassica napus HOM05D004484 ORTHO05D005370 2.4e-245 852.4 686 59.9
BolC8t47375H Brassica oleracea HOM05D004484 ORTHO05D005370 1.2e-244 850.1 686 59.9
GSVIVG01027609001 Vitis vinifera HOM05D004484 ORTHO05D005370 7.6e-244 847.4 660 65.5
CARHR037700 Cardamine hirsuta HOM05D004484 ORTHO05D005370 2.2e-243 845.9 691 60.5
AL1G54570 Arabidopsis lyrata HOM05D004484 ORTHO05D005370 3.5e-241 838.6 674 60.7
A08p05330 Brassica napus HOM05D004484 ORTHO05D005370 6.6e-240 834.3 666 60.5
AUR62013627 Chenopodium quinoa HOM05D004484 ORTHO05D005370 6.4e-235 817.8 705 60.4
SHI13523 Sapria himalayana HOM05D004484 ORTHO05D005370 1.9e-231 806.2 661 61.9
Hund27347 Selenicereus undatus HOM05D004484 ORTHO05D005370 8.4e-227 790.8 606 66.5
HPP92_027818 Vanilla planifolia HOM05D004484 ORTHO05D005370 6.0e-225 784.6 685 58.4
Zm00001eb064930 Zea mays HOM05D004484 ORTHO05D005370 5.6e-223 778.1 670 58.4
COL.COLO4_07018 Corchorus olitorius HOM05D004484 ORTHO05D005370 8.7e-216 754.2 540 68.0
unitig_749.g13780 Utricularia gibba HOM05D004484 ORTHO05D005370 4.2e-210 735.3 575 65.0
arahy.Tifrunner.gnm1.ann1.03ZR4A Arachis hypogaea HOM05D004484 ORTHO05D005370 3.3e-207 725.7 715 55.0
arahy.Tifrunner.gnm1.ann1.5WGS6V Arachis hypogaea HOM05D004484 ORTHO05D005370 2.8e-206 722.6 659 58.0
COL.COLO4_12548 Corchorus olitorius HOM05D004484 ORTHO05D005370 5.0e-203 711.8 710 52.4
Potri.002G148200 Populus trichocarpa HOM05D004484 ORTHO05D005370 2.6e-196 689.5 489 71.6
arahy.Tifrunner.gnm1.ann1.5492A7 Arachis hypogaea HOM05D004484 ORTHO05D005370 4.5e-196 688.7 678 55.9
Hma1.2p1_0086F.1_g044880 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 2.6e-191 672.9 459 75.6
arahy.Tifrunner.gnm1.ann1.T9R8PC Arachis hypogaea HOM05D004484 ORTHO05D005370 4.5e-188 662.1 690 54.1
Pp3c22_11100 Physcomitrium patens HOM05D004484 ORTHO05D005370 1.2e-185 654.1 693 48.2
Thhalv10011351m.g Eutrema salsugineum HOM05D004484 ORTHO05D005370 1.6e-185 653.7 649 52.7
Lj9C569T11 Lonicera japonica HOM05D004484 ORTHO05D005370 6.1e-185 651.7 468 69.2
Aa31LG10G5650 Aethionema arabicum HOM05D004484 ORTHO05D005370 1.2e-180 637.5 588 56.5
CDE04G3156 Ceratophyllum demersum HOM05D004484 ORTHO05D005370 2.7e-180 636.3 677 50.5
ATR0049G077 Amborella trichopoda HOM05D004484 ORTHO05D005370 9.4e-178 627.9 458 65.9
SMO367G0514 Selaginella moellendorffii HOM05D004484 ORTHO05D005370 2.6e-175 619.8 687 47.3
Mapoly0129s0012 Marchantia polymorpha HOM05D004484 ORTHO05D005370 4.2e-170 602.4 633 48.3
PGR119G1536 Punica granatum HOM05D004484 ORTHO05D005370 1.2e-161 574.3 516 56.6
RcHm_v2.0_Chr1g0350581 Rosa chinensis HOM05D004484 ORTHO05D005370 4.9e-158 562.4 381 70.9
AagrBONN_evm.TU.Sc2ySwM_368.3373 Anthoceros agrestis HOM05D004484 ORTHO05D005370 4.7e-153 545.8 689 42.1
CBR_g30081 Chara braunii HOM05D004484 ORTHO05D005370 8.1e-113 412.1 636 37.3
RcHm_v2.0_Chr1g0350571 Rosa chinensis HOM05D004484 ORTHO05D005370 6.4e-110 402.5 296 69.9
SHI38996 Sapria himalayana HOM05D004484 ORTHO05D005370 2.9e-86 323.9 204 76.0
Hma1.2p1_0701F.1_g205850 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.1e-77 295.4 279 59.9
SHI38095 Sapria himalayana HOM05D004484 ORTHO05D005370 3.0e-75 287.3 190 72.6
SHI38094 Sapria himalayana HOM05D004484 ORTHO05D005370 2.5e-61 241.1 211 57.3
arahy.Tifrunner.gnm1.ann1.47H85H Arachis hypogaea HOM05D004484 ORTHO05D005370 2.0e-58 231.5 332 43.1
Glyma.06G243967 Glycine max HOM05D004484 ORTHO05D005370 6.5e-54 216.5 144 68.8
SEGI_20047 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 2.8e-49 201.1 221 46.2
Glyma.01G142851 Glycine max HOM05D004484 ORTHO05D005370 1.8e-48 198.4 164 60.4
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 1.4e-43 182.2 267 41.9
MCO15G158 Micromonas commoda HOM05D004484 ORTHO05D005370 8.9e-43 179.5 547 29.4
QL08p052505 Quercus lobata HOM05D004484 ORTHO05D005370 9.8e-42 176.0 175 54.9
Hma1.2p1_0170F.1_g075250 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.2e-39 169.1 202 52.5
Glyma.17G005802 Glycine max HOM05D004484 ORTHO05D005370 1.1e-37 162.5 192 51.0
CAN.G594.7 Capsicum annuum HOM05D004484 ORTHO05D005370 1.9e-37 161.8 105 78.1
SHI38995 Sapria himalayana HOM05D004484 ORTHO05D005370 9.5e-37 159.5 126 63.5
CAN.G205.22 Capsicum annuum HOM05D004484 ORTHO05D005370 2.6e-34 151.4 96 74.0
TPR.G22633 Trifolium pratense HOM05D004484 ORTHO05D005370 2.6e-34 151.4 92 75.0
SEGI_29754 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 9.8e-34 149.4 116 62.9
Solyc01g091430.2 Solanum lycopersicum HOM05D004484 ORTHO05D005370 1.4e-32 145.6 100 72.0
SGA_v2.0_scaffold65G22170 Striga asiatica HOM05D004484 ORTHO05D005370 1.9e-32 145.2 201 43.8
Aa31LG10G5660 Aethionema arabicum HOM05D004484 ORTHO05D005370 7.3e-29 133.3 96 63.5
Os03g0856200 Oryza sativa ssp. japonica HOM05D004484 ORTHO05D005370 1.2e-28 132.5 97 62.9
CAN.G388.14 Capsicum annuum HOM05D004484 ORTHO05D005370 2.1e-28 131.7 76 75.0
Eucgr.I00725 Eucalyptus grandis HOM05D004484 ORTHO05D005370 8.9e-27 126.3 82 73.2
CAN.G279.6 Capsicum annuum HOM05D004484 ORTHO05D005370 3.5e-23 114.4 72 76.4
SGA_v2.0_scaffold10G05342 Striga asiatica HOM05D004484 ORTHO05D005370 1.2e-18 99.4 187 36.9
SGA_v2.0_scaffold172G39032 Striga asiatica HOM05D004484 ORTHO05D005370 5.8e-18 97.1 168 41.1
PRCOL_00002704 Prasinoderma coloniale HOM05D004484 ORTHO05D005370 9.9e-18 96.3 504 25.4
SGA_v2.0_scaffold29G12247 Striga asiatica HOM05D004484 ORTHO05D005370 2.2e-17 95.1 185 35.7
Eucgr.E01421 Eucalyptus grandis HOM05D004484 ORTHO05D005370 1.2e-15 89.4 66 65.2
Oeu032522.1 Olea europaea HOM05D004484 ORTHO05D005370 1.2e-15 89.4 63 71.4
TPR.G9848 Trifolium pratense HOM05D000164 ORTHO05D000096 3.9e-14 84.3 55 69.1
Solyc01g091440.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 5.1e-14 84.0 132 40.9
Eucgr.L02075 Eucalyptus grandis HOM05D004484 ORTHO05D005370 1.9e-13 82.0 66 60.6
CAN.G321.48 Capsicum annuum HOM05D001267 ORTHO05D002376 2.5e-13 81.6 86 53.5
Glyma.06G243934 Glycine max HOM05D004484 ORTHO05D005370 7.3e-13 80.1 81 48.1
Glyma.06G244302 Glycine max HOM05D004484 ORTHO05D005370 2.8e-12 78.2 134 38.8
arahy.Tifrunner.gnm1.ann1.0F06NC Arachis hypogaea HOM05D004484 ORTHO05D005370 3.4e-10 71.2 48 64.6
Cre10.g423800 Chlamydomonas reinhardtii HOM05D004484 ORTHO05D005370 3.8e-09 67.8 557 21.9
unitig_749.g13781 Utricularia gibba HOM05D004484 ORTHO05D005370 1.4e-08 65.9 43 72.1
AagrBONN_evm.TU.Sc2ySwM_368.3370 Anthoceros agrestis HOM05D004484 ORTHO05D005370 7.1e-08 63.5 111 29.7
Hma1.2p1_1470F.1_g285600 Hydrangea macrophylla HOM05D000467 ORTHO05D011800 3.5e-07 61.2 46 67.4


User provided reference genes

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