Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005372g0070 Nicotiana tabacum HOM05D004484 ORTHO05D005370 0.0e+00 1416.4 722 100.0
Nitab4.5_0000457g0330 Nicotiana tabacum HOM05D004484 ORTHO05D005370 0.0e+00 1306.6 722 92.9
PGSC0003DMG400012761 Solanum tuberosum HOM05D004484 ORTHO05D005370 0.0e+00 1222.6 722 86.6
CAN.G388.13 Capsicum annuum HOM05D004484 ORTHO05D005370 0.0e+00 1212.6 722 85.6
Peaxi162Scf00021g01723 Petunia axillaris HOM05D004484 ORTHO05D005370 0.0e+00 1202.2 722 84.6
Solyc01g091350.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 0.0e+00 1189.5 722 84.3
Sopen01g037090 Solanum pennellii HOM05D004484 ORTHO05D005370 0.0e+00 1185.2 722 83.9
Cc02_g36700 Coffea canephora HOM05D004484 ORTHO05D005370 1.2e-305 1052.7 697 75.8
Dinv32377 Davidia involucrata HOM05D004484 ORTHO05D005370 3.5e-300 1034.6 697 74.3
Oeu055487.1 Olea europaea HOM05D004484 ORTHO05D005370 1.5e-298 1029.2 702 74.1
Lj7A528T57 Lonicera japonica HOM05D004484 ORTHO05D005370 1.2e-289 999.6 715 71.3
Hma1.2p1_0086F.1_g044870 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 2.4e-288 995.3 697 71.6
MSTRG.20748 Avicennia marina HOM05D004484 ORTHO05D005370 2.9e-286 988.4 701 71.5
Migut.B01635 Erythranthe guttata HOM05D004484 ORTHO05D005370 4.6e-284 981.1 701 71.5
QL08p052472 Quercus lobata HOM05D004484 ORTHO05D005370 8.7e-283 976.9 699 70.5
GSVIVG01027610001 Vitis vinifera HOM05D004484 ORTHO05D005370 2.8e-281 971.8 698 69.6
CiPaw.01G262000 Carya illinoinensis HOM05D004484 ORTHO05D005370 1.2e-279 966.5 698 68.9
SGA_v2.0_scaffold153G37012 Striga asiatica HOM05D004484 ORTHO05D005370 3.4e-279 964.9 701 69.9
CSS0036976 Camellia sinensis var. sinensis HOM05D004484 ORTHO05D005370 4.5e-279 964.5 704 70.5
ECA234G1700 Erigeron canadensis HOM05D004484 ORTHO05D005370 1.3e-278 963.0 701 69.3
Potri.014G069700 Populus trichocarpa HOM05D004484 ORTHO05D005370 3.5e-276 954.9 697 69.2
Eucgr.E01418 Eucalyptus grandis HOM05D004484 ORTHO05D005370 3.0e-275 951.8 698 68.2
vmacro13399 Vaccinium macrocarpon HOM05D004484 ORTHO05D005370 6.7e-275 950.7 698 69.2
HanXRQChr16g0520161 Helianthus annuus HOM05D004484 ORTHO05D005370 1.1e-274 949.9 702 68.2
TWI23G0227 Tripterygium wilfordii HOM05D004484 ORTHO05D005370 7.4e-274 947.2 698 68.6
DCAR_015907 Daucus carota HOM05D004484 ORTHO05D005370 1.6e-273 946.0 697 67.9
Sc02g0002590 Simmondsia chinensis HOM05D004484 ORTHO05D005370 6.2e-273 944.1 682 69.2
Atru.chr5.309 Acer truncatum HOM05D004484 ORTHO05D005370 1.8e-272 942.6 698 67.8
Prupe.2G145600 Prunus persica HOM05D004484 ORTHO05D005370 3.1e-272 941.8 698 68.3
Haze_16815 Corylus avellana HOM05D004484 ORTHO05D005370 1.2e-271 939.9 760 63.4
Sed0020955 Sechium edule HOM05D004484 ORTHO05D005370 1.5e-271 939.5 712 66.3
MD07G1121000 Malus domestica HOM05D004484 ORTHO05D005370 4.5e-271 937.9 698 68.5
PSO478G5008 Papaver somniferum HOM05D004484 ORTHO05D005370 1.7e-270 936.0 701 67.9
Nn1g01233 Nelumbo nucifera HOM05D004484 ORTHO05D005370 2.9e-270 935.3 695 67.3
ClCG05G002220 Citrullus lanatus HOM05D004484 ORTHO05D005370 1.1e-269 933.3 703 67.1
Aqoxy5G00403 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 1.9e-269 932.6 698 67.9
Ca_19886_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 7.1e-269 930.6 697 67.0
CsaV3_3G009680 Cucumis sativus L. HOM05D004484 ORTHO05D005370 5.1e-267 924.5 703 65.4
CANSAT56G4533 Cannabis sativa HOM05D004484 ORTHO05D005370 2.5e-266 922.2 698 66.8
Manes.01G265900 Manihot esculenta HOM05D004484 ORTHO05D005370 9.6e-266 920.2 698 66.6
Ca_27059_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 2.8e-265 918.7 697 66.6
MBI12_g10758_MAGBIO Magnolia biondii HOM05D004484 ORTHO05D005370 3.7e-265 918.3 712 66.6
Lalb_Chr13g0291731 Lupinus albus HOM05D004484 ORTHO05D005370 4.8e-265 917.9 698 66.3
TAR629G2468 Trochodendron aralioides HOM05D004484 ORTHO05D005370 4.8e-265 917.9 681 67.8
MELO3C006188.2 Cucumis melo HOM05D004484 ORTHO05D005370 3.1e-264 915.2 685 66.4
Medtr4g023560 Medicago truncatula HOM05D004484 ORTHO05D005370 4.0e-264 914.8 697 66.3
Lsat_1_v5_gn_4_43240 Lactuca sativa HOM05D004484 ORTHO05D005370 6.9e-264 914.1 698 66.6
CANSAT56G1200 Cannabis sativa HOM05D004484 ORTHO05D005370 2.6e-263 912.1 698 66.0
Lj3g0013484 Lotus japonicus HOM05D004484 ORTHO05D005370 2.9e-262 908.7 698 66.2
EL10Ac1g00900 Beta vulgaris HOM05D004484 ORTHO05D005370 1.1e-261 906.7 717 63.2
Cpa.g.sc18.115 Carica papaya HOM05D004484 ORTHO05D005370 1.2e-260 903.3 699 64.9
FvH4_7g11900 Fragaria vesca HOM05D004484 ORTHO05D005370 1.2e-260 903.3 698 64.9
FAN01G0628 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.0e-259 900.2 698 64.5
FAN06G1787 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.3e-259 899.8 698 65.0
Thecc.01G376200 Theobroma cacao HOM05D004484 ORTHO05D005370 1.8e-259 899.4 698 63.8
FAN10G1483 Fragaria x ananassa HOM05D004484 ORTHO05D005370 3.0e-259 898.7 698 64.9
FAN06G3319 Fragaria x ananassa HOM05D004484 ORTHO05D005370 5.1e-259 897.9 698 64.8
arahy.Tifrunner.gnm1.ann1.6K85L9 Arachis hypogaea HOM05D004484 ORTHO05D005370 6.7e-259 897.5 699 65.7
arahy.Tifrunner.gnm1.ann1.HW1IVJ Arachis hypogaea HOM05D004484 ORTHO05D005370 6.7e-259 897.5 699 65.7
PGR042G0667 Punica granatum HOM05D004484 ORTHO05D005370 1.1e-258 896.7 702 63.7
arahy.Tifrunner.gnm1.ann1.V1M046 Arachis hypogaea HOM05D004484 ORTHO05D005370 3.3e-258 895.2 698 65.3
FAN10G2369 Fragaria x ananassa HOM05D004484 ORTHO05D005370 3.3e-258 895.2 698 64.8
arahy.Tifrunner.gnm1.ann1.Q9SWB6 Arachis hypogaea HOM05D004484 ORTHO05D005370 2.2e-257 892.5 699 65.1
Psat7g233440 Pisum sativum HOM05D004484 ORTHO05D005370 8.2e-257 890.6 698 64.2
Sabra14G0049400 Salix brachista HOM05D004484 ORTHO05D005370 2.4e-256 889.0 711 64.4
Ciclev10019016m.g Citrus clementina HOM05D004484 ORTHO05D005370 1.3e-254 883.2 705 64.3
AUR62004221 Chenopodium quinoa HOM05D004484 ORTHO05D005370 7.2e-253 877.5 728 62.5
Lalb_Chr12g0208261 Lupinus albus HOM05D004484 ORTHO05D005370 7.2e-253 877.5 698 64.2
Phvul.002G205800 Phaseolus vulgaris HOM05D004484 ORTHO05D005370 8.8e-251 870.5 701 63.3
Glyma.05G125700 Glycine max HOM05D004484 ORTHO05D005370 9.7e-250 867.1 699 63.8
VMungo0251G1206 Vigna mungo HOM05D004484 ORTHO05D005370 2.2e-246 855.9 698 61.7
Gorai.007G091100 Gossypium raimondii HOM05D004484 ORTHO05D005370 5.0e-246 854.7 699 61.2
Gohir.A11G080700 Gossypium hirsutum HOM05D004484 ORTHO05D005370 3.2e-245 852.0 699 61.1
Gohir.D11G085300 Gossypium hirsutum HOM05D004484 ORTHO05D005370 7.2e-245 850.9 699 61.1
Ah.13g073490 Amaranthus hybridus HOM05D004484 ORTHO05D005370 2.7e-244 849.0 721 60.3
Cfa001721 Carpinus fangiana HOM05D004484 ORTHO05D005370 4.7e-244 848.2 588 71.1
Aqoxy3G02138 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 3.0e-243 845.5 698 61.3
GSVIVG01027609001 Vitis vinifera HOM05D004484 ORTHO05D005370 2.9e-238 828.9 685 62.6
THA.LOC104817247 Tarenaya hassleriana HOM05D004484 ORTHO05D005370 6.1e-236 821.2 698 58.7
TPR.G9845 Trifolium pratense HOM05D004484 ORTHO05D005370 2.8e-233 812.4 731 58.1
FAN03G1897 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.4e-232 810.1 700 59.7
BraSC267t45947Z Brassica rapa HOM05D004484 ORTHO05D005370 1.1e-229 800.4 699 56.2
AL1G54570 Arabidopsis lyrata HOM05D004484 ORTHO05D005370 2.5e-229 799.3 699 56.7
C08p05620 Brassica napus HOM05D004484 ORTHO05D005370 3.2e-229 798.9 699 56.7
Sp1g35020 Schrenkiella parvula HOM05D004484 ORTHO05D005370 3.2e-229 798.9 690 56.4
AT1G48050 Arabidopsis thaliana HOM05D004484 ORTHO05D005370 4.2e-229 798.5 698 57.0
Carub.0001s3716 Capsella rubella HOM05D004484 ORTHO05D005370 4.2e-229 798.5 699 56.7
BcaB04g17469 Brassica carinata HOM05D004484 ORTHO05D005370 7.2e-229 797.7 700 56.6
BolC8t47375H Brassica oleracea HOM05D004484 ORTHO05D005370 7.2e-229 797.7 699 56.5
BcaC07g37180 Brassica carinata HOM05D004484 ORTHO05D005370 6.1e-228 794.7 699 56.4
AUR62013627 Chenopodium quinoa HOM05D004484 ORTHO05D005370 4.0e-227 792.0 717 58.4
Hund27347 Selenicereus undatus HOM05D004484 ORTHO05D005370 1.3e-225 786.9 607 65.9
A08p05330 Brassica napus HOM05D004484 ORTHO05D005370 6.3e-225 784.6 682 56.6
SHI13523 Sapria himalayana HOM05D004484 ORTHO05D005370 7.0e-224 781.2 678 60.2
CARHR037700 Cardamine hirsuta HOM05D004484 ORTHO05D005370 5.9e-223 778.1 699 55.8
Zm00001eb064930 Zea mays HOM05D004484 ORTHO05D005370 1.8e-219 766.5 701 56.8
unitig_749.g13780 Utricularia gibba HOM05D004484 ORTHO05D005370 4.3e-205 718.8 572 64.2
HPP92_027818 Vanilla planifolia HOM05D004484 ORTHO05D005370 8.0e-204 714.5 701 54.5
COL.COLO4_07018 Corchorus olitorius HOM05D004484 ORTHO05D005370 9.8e-202 707.6 565 62.8
Potri.002G148200 Populus trichocarpa HOM05D004484 ORTHO05D005370 2.6e-194 682.9 491 69.0
Hma1.2p1_0086F.1_g044880 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 4.9e-193 678.7 455 74.9
arahy.Tifrunner.gnm1.ann1.03ZR4A Arachis hypogaea HOM05D004484 ORTHO05D005370 3.6e-188 662.5 718 51.3
arahy.Tifrunner.gnm1.ann1.5WGS6V Arachis hypogaea HOM05D004484 ORTHO05D005370 1.4e-187 660.6 673 53.9
Lj9C569T11 Lonicera japonica HOM05D004484 ORTHO05D005370 3.4e-186 656.0 491 66.6
COL.COLO4_12548 Corchorus olitorius HOM05D004484 ORTHO05D005370 2.9e-185 652.9 720 49.0
Pp3c22_11100 Physcomitrium patens HOM05D004484 ORTHO05D005370 4.4e-178 629.0 724 46.5
arahy.Tifrunner.gnm1.ann1.5492A7 Arachis hypogaea HOM05D004484 ORTHO05D005370 3.2e-176 622.9 685 51.4
arahy.Tifrunner.gnm1.ann1.T9R8PC Arachis hypogaea HOM05D004484 ORTHO05D005370 1.5e-173 614.0 689 49.9
Aa31LG10G5650 Aethionema arabicum HOM05D004484 ORTHO05D005370 5.6e-173 612.1 583 54.2
CDE04G3156 Ceratophyllum demersum HOM05D004484 ORTHO05D005370 2.8e-172 609.8 702 47.4
Thhalv10011351m.g Eutrema salsugineum HOM05D004484 ORTHO05D005370 2.2e-169 600.1 663 48.9
ATR0049G077 Amborella trichopoda HOM05D004484 ORTHO05D005370 3.5e-167 592.8 472 62.1
SMO367G0514 Selaginella moellendorffii HOM05D004484 ORTHO05D005370 3.4e-162 576.2 720 43.9
Mapoly0129s0012 Marchantia polymorpha HOM05D004484 ORTHO05D005370 3.3e-157 559.7 656 44.5
PGR119G1536 Punica granatum HOM05D004484 ORTHO05D005370 2.3e-150 537.0 526 54.4
RcHm_v2.0_Chr1g0350581 Rosa chinensis HOM05D004484 ORTHO05D005370 1.9e-144 517.3 391 66.0
AagrBONN_evm.TU.Sc2ySwM_368.3373 Anthoceros agrestis HOM05D004484 ORTHO05D005370 1.3e-132 478.0 713 37.4
CBR_g30081 Chara braunii HOM05D004484 ORTHO05D005370 4.7e-111 406.4 681 34.8
RcHm_v2.0_Chr1g0350571 Rosa chinensis HOM05D004484 ORTHO05D005370 5.9e-106 389.4 295 66.8
SHI38996 Sapria himalayana HOM05D004484 ORTHO05D005370 8.0e-87 325.9 204 77.0
Hma1.2p1_0701F.1_g205850 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 3.4e-77 293.9 268 59.7
SHI38095 Sapria himalayana HOM05D004484 ORTHO05D005370 3.7e-76 290.4 190 72.6
arahy.Tifrunner.gnm1.ann1.47H85H Arachis hypogaea HOM05D004484 ORTHO05D005370 2.4e-59 234.6 337 43.9
SHI38094 Sapria himalayana HOM05D004484 ORTHO05D005370 1.8e-54 218.4 220 54.1
Glyma.06G243967 Glycine max HOM05D004484 ORTHO05D005370 3.1e-54 217.6 144 68.8
Glyma.01G142851 Glycine max HOM05D004484 ORTHO05D005370 9.6e-48 196.1 164 61.0
SEGI_20047 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 2.2e-44 184.9 247 39.7
CAN.G594.7 Capsicum annuum HOM05D004484 ORTHO05D005370 1.2e-42 179.1 107 81.3
Hma1.2p1_0170F.1_g075250 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 2.1e-42 178.3 202 51.5
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 7.9e-42 176.4 267 41.9
Glyma.17G005802 Glycine max HOM05D004484 ORTHO05D005370 2.3e-41 174.9 192 53.6
Solyc01g091430.2 Solanum lycopersicum HOM05D004484 ORTHO05D005370 8.7e-41 172.9 115 74.8
CAN.G205.22 Capsicum annuum HOM05D004484 ORTHO05D005370 7.6e-37 159.8 96 79.2
SEGI_29754 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 1.1e-35 156.0 116 65.5
MCO15G158 Micromonas commoda HOM05D004484 ORTHO05D005370 1.6e-34 152.1 521 26.7
QL08p052505 Quercus lobata HOM05D004484 ORTHO05D005370 1.6e-34 152.1 182 50.5
TPR.G22633 Trifolium pratense HOM05D004484 ORTHO05D005370 3.0e-33 147.9 92 76.1
SGA_v2.0_scaffold65G22170 Striga asiatica HOM05D004484 ORTHO05D005370 4.3e-32 144.1 201 42.3
SHI38995 Sapria himalayana HOM05D004484 ORTHO05D005370 4.8e-31 140.6 135 57.0
CAN.G388.14 Capsicum annuum HOM05D004484 ORTHO05D005370 3.4e-29 134.4 148 50.7
Eucgr.I00725 Eucalyptus grandis HOM05D004484 ORTHO05D005370 2.1e-26 125.2 89 67.4
CAN.G279.6 Capsicum annuum HOM05D004484 ORTHO05D005370 3.9e-25 120.9 72 81.9
Os03g0856200 Oryza sativa ssp. japonica HOM05D004484 ORTHO05D005370 1.4e-22 112.5 80 62.5
Aa31LG10G5660 Aethionema arabicum HOM05D004484 ORTHO05D005370 2.6e-21 108.2 86 55.8
Solyc01g091440.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 1.7e-20 105.5 133 49.6
SGA_v2.0_scaffold10G05342 Striga asiatica HOM05D004484 ORTHO05D005370 1.9e-19 102.1 191 36.6
SGA_v2.0_scaffold172G39032 Striga asiatica HOM05D004484 ORTHO05D005370 1.4e-17 95.9 168 37.5
SGA_v2.0_scaffold29G12247 Striga asiatica HOM05D004484 ORTHO05D005370 5.1e-17 94.0 186 36.6
PRCOL_00002704 Prasinoderma coloniale HOM05D004484 ORTHO05D005370 6.7e-17 93.6 505 25.0
CAN.G321.48 Capsicum annuum HOM05D001267 ORTHO05D002376 5.7e-16 90.5 64 73.4
Eucgr.E01421 Eucalyptus grandis HOM05D004484 ORTHO05D005370 2.2e-15 88.6 63 66.7
Glyma.06G243934 Glycine max HOM05D004484 ORTHO05D005370 2.0e-13 82.0 81 50.6
Eucgr.L02075 Eucalyptus grandis HOM05D004484 ORTHO05D005370 5.9e-13 80.5 63 63.5
Glyma.06G244302 Glycine max HOM05D004484 ORTHO05D005370 7.7e-13 80.1 134 40.3
TPR.G9848 Trifolium pratense HOM05D000164 ORTHO05D000096 7.7e-13 80.1 55 67.3
Oeu032522.1 Olea europaea HOM05D004484 ORTHO05D005370 9.4e-11 73.2 70 54.3
AagrBONN_evm.TU.Sc2ySwM_368.3370 Anthoceros agrestis HOM05D004484 ORTHO05D005370 1.0e-09 69.7 111 36.9
Cre10.g423800 Chlamydomonas reinhardtii HOM05D004484 ORTHO05D005370 2.8e-07 61.6 555 20.9
arahy.Tifrunner.gnm1.ann1.0F06NC Arachis hypogaea HOM05D004484 ORTHO05D005370 2.4e-06 58.5 35 71.4


User provided reference genes

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