Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000848g0030 Nicotiana tabacum HOM05D001458 ORTHO05D006787 1.1e-74 283.1 137 100.0
EL10Ac7g17326 Beta vulgaris HOM05D001458 ORTHO05D006787 5.2e-27 124.8 140 49.3
HanXRQChr02g0051861 Helianthus annuus HOM05D001458 ORTHO05D006787 6.7e-27 124.4 142 50.0
Peaxi162Scf01517g00015 Petunia axillaris HOM05D001458 ORTHO05D006787 6.7e-27 124.4 140 50.0
AUR62040528 Chenopodium quinoa HOM05D001458 ORTHO05D006787 8.8e-27 124.0 140 49.3
AUR62042916 Chenopodium quinoa HOM05D001458 ORTHO05D006787 8.8e-27 124.0 140 49.3
ECA233G5957 Erigeron canadensis HOM05D001458 ORTHO05D006787 8.8e-27 124.0 142 50.0
Lsat_1_v5_gn_6_29580 Lactuca sativa HOM05D001458 ORTHO05D006787 8.8e-27 124.0 142 49.3
Nitab4.5_0000848g0150 Nicotiana tabacum HOM05D001458 ORTHO05D006787 8.8e-27 124.0 142 50.0
Nitab4.5_0006316g0010 Nicotiana tabacum HOM05D001458 ORTHO05D006787 8.8e-27 124.0 142 50.0
TWI18G0556 Tripterygium wilfordii HOM05D001458 ORTHO05D006787 8.8e-27 124.0 142 49.3
Ciclev10011761m.g Citrus clementina HOM05D001458 ORTHO05D006787 1.1e-26 123.6 140 50.7
CsaV3_4G024390 Cucumis sativus L. HOM05D001458 ORTHO05D006787 1.1e-26 123.6 140 50.7
Dinv35695 Davidia involucrata HOM05D001458 ORTHO05D006787 1.1e-26 123.6 142 49.3
Manes.09G070800 Manihot esculenta HOM05D001458 ORTHO05D006787 1.1e-26 123.6 140 50.7
Actinidia11230 Actinidia chinensis HOM05D001458 ORTHO05D006787 1.5e-26 123.2 142 49.3
Ah.15g092050 Amaranthus hybridus HOM05D001458 ORTHO05D006787 1.5e-26 123.2 140 49.3
AL6G12090 Arabidopsis lyrata HOM05D001458 ORTHO05D006787 1.5e-26 123.2 142 49.3
AT5G02820 Arabidopsis thaliana HOM05D001458 ORTHO05D006787 1.5e-26 123.2 142 49.3
CANSAT80G0404 Cannabis sativa HOM05D001458 ORTHO05D006787 1.5e-26 123.2 140 50.7
Carub.0006s0162 Capsella rubella HOM05D001458 ORTHO05D006787 1.5e-26 123.2 142 49.3
CARHR210510 Cardamine hirsuta HOM05D001458 ORTHO05D006787 1.5e-26 123.2 142 49.3
CiPaw.09G182000 Carya illinoinensis HOM05D001458 ORTHO05D006787 1.5e-26 123.2 140 50.7
Haze_20671 Corylus avellana HOM05D001458 ORTHO05D006787 1.5e-26 123.2 140 50.7
MELO3C003071.2 Cucumis melo HOM05D001458 ORTHO05D006787 1.5e-26 123.2 140 50.7
DCAR_009271 Daucus carota HOM05D001458 ORTHO05D006787 1.5e-26 123.2 142 49.3
Gohir.A04G077200 Gossypium hirsutum HOM05D001458 ORTHO05D006787 1.5e-26 123.2 140 50.0
Nn2g10614 Nelumbo nucifera HOM05D001458 ORTHO05D006787 1.5e-26 123.2 140 50.7
PSO339G6008 Papaver somniferum HOM05D001458 ORTHO05D006787 1.5e-26 123.2 142 48.6
QL07p045562 Quercus lobata HOM05D001458 ORTHO05D006787 1.5e-26 123.2 142 48.6
RhsimUnG0119500 Rhododendron simsii HOM05D001458 ORTHO05D006787 1.5e-26 123.2 142 49.3
THA.LOC104816314 Tarenaya hassleriana HOM05D001458 ORTHO05D006787 1.5e-26 123.2 140 50.7
Aa31LG1G22080 Aethionema arabicum HOM05D001458 ORTHO05D006787 2.0e-26 122.9 142 49.3
BcaC06g32012 Brassica carinata HOM05D001458 ORTHO05D006787 2.0e-26 122.9 140 50.0
A10p32900 Brassica napus HOM05D001458 ORTHO05D006787 2.0e-26 122.9 140 50.0
C09p73830 Brassica napus HOM05D001458 ORTHO05D006787 2.0e-26 122.9 140 50.0
BolC9t60117H Brassica oleracea HOM05D001458 ORTHO05D006787 2.0e-26 122.9 140 50.0
BraA10t45327Z Brassica rapa HOM05D001458 ORTHO05D006787 2.0e-26 122.9 140 50.0
CSS0026634 Camellia sinensis var. sinensis HOM05D001458 ORTHO05D006787 2.0e-26 122.9 142 48.6
Eucgr.K03202 Eucalyptus grandis HOM05D001458 ORTHO05D006787 2.0e-26 122.9 140 50.0
Thhalv10015802m.g Eutrema salsugineum HOM05D001458 ORTHO05D006787 2.0e-26 122.9 140 50.0
Lj5g0024683 Lotus japonicus HOM05D001458 ORTHO05D006787 2.0e-26 122.9 142 48.6
Medtr1g067040 Medicago truncatula HOM05D001458 ORTHO05D006787 2.0e-26 122.9 142 48.6
Oeu034821.1 Olea europaea HOM05D001458 ORTHO05D006787 2.0e-26 122.9 142 49.3
Sp6g39760 Schrenkiella parvula HOM05D001458 ORTHO05D006787 2.0e-26 122.9 140 50.0
TAR369G1107 Trochodendron aralioides HOM05D001458 ORTHO05D006787 2.0e-26 122.9 142 48.6
Cfa017488 Carpinus fangiana HOM05D001458 ORTHO05D006787 2.6e-26 122.5 140 50.0
Gohir.D04G116300 Gossypium hirsutum HOM05D001458 ORTHO05D006787 2.6e-26 122.5 140 50.0
Gorai.009G420900 Gossypium raimondii HOM05D001458 ORTHO05D006787 2.6e-26 122.5 140 50.0
Lj3A977T51 Lonicera japonica HOM05D001458 ORTHO05D006787 2.6e-26 122.5 142 48.6
PSO384G1578 Papaver somniferum HOM05D001458 ORTHO05D006787 2.6e-26 122.5 142 48.6
PGR004G0986 Punica granatum HOM05D001458 ORTHO05D006787 2.6e-26 122.5 140 49.3
Sabra06G0104100 Salix brachista HOM05D001458 ORTHO05D006787 2.6e-26 122.5 142 49.3
Sopen09g002080 Solanum pennellii HOM05D001458 ORTHO05D006787 2.6e-26 122.5 140 50.0
PGSC0003DMG400027900 Solanum tuberosum HOM05D001458 ORTHO05D006787 2.6e-26 122.5 140 50.0
SGA_v2.0_scaffold94G28657 Striga asiatica HOM05D001458 ORTHO05D006787 2.6e-26 122.5 134 50.0
arahy.Tifrunner.gnm1.ann1.DP4C8A Arachis hypogaea HOM05D001458 ORTHO05D006787 3.3e-26 122.1 142 48.6
CAN.G350.46 Capsicum annuum HOM05D001458 ORTHO05D006787 3.3e-26 122.1 140 50.0
ClCG04G008770 Citrullus lanatus HOM05D001458 ORTHO05D006787 3.3e-26 122.1 140 50.0
Glyma.10G048300 Glycine max HOM05D001458 ORTHO05D006787 3.3e-26 122.1 142 48.6
Hma1.2p1_0350F.1_g132690 Hydrangea macrophylla HOM05D001458 ORTHO05D006787 3.3e-26 122.1 142 48.6
vmacro20070 Vaccinium macrocarpon HOM05D001458 ORTHO05D006787 3.3e-26 122.1 142 47.9
Atru.BG.202.p Acer truncatum HOM05D001458 ORTHO05D006787 4.4e-26 121.7 139 50.4
Duzib128G1651 Durio zibethinus HOM05D001458 ORTHO05D006787 4.4e-26 121.7 142 49.3
Migut.L01653 Erythranthe guttata HOM05D001458 ORTHO05D006787 4.4e-26 121.7 142 47.9
Potri.006G132600 Populus trichocarpa HOM05D001458 ORTHO05D006787 4.4e-26 121.7 142 49.3
SalBow4G2907 Salvia bowleyana HOM05D001458 ORTHO05D006787 4.4e-26 121.7 142 48.6
arahy.Tifrunner.gnm1.ann1.YX38EM Arachis hypogaea HOM05D001458 ORTHO05D006787 5.7e-26 121.3 142 47.9
Ca_02309_v3 Cicer arietinum L. HOM05D001458 ORTHO05D006787 5.7e-26 121.3 142 48.6
Glyma.13G136100 Glycine max HOM05D001458 ORTHO05D006787 5.7e-26 121.3 142 48.6
Sc07g0006220 Simmondsia chinensis HOM05D001458 ORTHO05D006787 5.7e-26 121.3 140 49.3
Lalb_Chr21g0314581 Lupinus albus HOM05D001458 ORTHO05D006787 7.4e-26 120.9 142 48.6
TPR.G35661 Trifolium pratense HOM05D001458 ORTHO05D006787 7.4e-26 120.9 142 48.6
GSVIVG01025540001 Vitis vinifera HOM05D001458 ORTHO05D006787 7.4e-26 120.9 140 50.0
Psat0ss6317g0080 Pisum sativum HOM05D001458 ORTHO05D006787 9.7e-26 120.6 142 47.9
Sed0021994 Sechium edule HOM05D001458 ORTHO05D006787 9.7e-26 120.6 142 47.2
VMungo0464G1099 Vigna mungo HOM05D001458 ORTHO05D006787 9.7e-26 120.6 142 47.9
Aqoxy4G03150 Aquilegia oxysepala HOM05D001458 ORTHO05D006787 1.3e-25 120.2 142 46.5
FvH4_1g22710 Fragaria vesca HOM05D001458 ORTHO05D006787 1.3e-25 120.2 142 48.6
FAN23G1932 Fragaria x ananassa HOM05D001458 ORTHO05D006787 1.3e-25 120.2 142 48.6
FAN26G1855 Fragaria x ananassa HOM05D001458 ORTHO05D006787 1.3e-25 120.2 142 48.6
Phvul.007G162700 Phaseolus vulgaris HOM05D001458 ORTHO05D006787 1.3e-25 120.2 142 47.9
MBI14_g28308_MAGBIO Magnolia biondii HOM05D001458 ORTHO05D006787 2.2e-25 119.4 132 48.5
Prupe.6G243200 Prunus persica HOM05D001458 ORTHO05D006787 2.2e-25 119.4 140 49.3
RcHm_v2.0_Chr2g0116961 Rosa chinensis HOM05D001458 ORTHO05D006787 2.8e-25 119.0 134 49.3
COL.COLO4_27103 Corchorus olitorius HOM05D001458 ORTHO05D006787 3.7e-25 118.6 140 48.6
Cc06_g03430 Coffea canephora HOM05D001458 ORTHO05D006787 4.8e-25 118.2 140 47.9
SEGI_09198 Sequoiadendron giganteum HOM05D001458 ORTHO05D006787 4.8e-25 118.2 140 47.1
Thecc.05G052100 Theobroma cacao HOM05D001458 ORTHO05D006787 4.8e-25 118.2 140 48.6
SMO266G0075 Selaginella moellendorffii HOM05D001458 ORTHO05D006787 1.4e-24 116.7 140 45.7
ATR0594G128 Amborella trichopoda HOM05D001458 ORTHO05D006787 1.8e-24 116.3 132 47.7
MD04G1113900 Malus domestica HOM05D001458 ORTHO05D006787 2.4e-24 115.9 140 47.1
Os03g0284800 Oryza sativa ssp. japonica HOM05D001458 ORTHO05D006787 2.4e-24 115.9 128 48.4
Zm00001eb013040 Zea mays HOM05D001458 ORTHO05D006787 2.4e-24 115.9 128 48.4
HPP92_003602 Vanilla planifolia HOM05D001458 ORTHO05D006787 1.6e-23 113.2 128 46.9
Mapoly0114s0011 Marchantia polymorpha HOM05D001458 ORTHO05D006787 4.5e-23 111.7 140 42.9
Pp3c8_12030 Physcomitrium patens HOM05D001458 ORTHO05D006787 4.5e-23 111.7 140 43.6
Atru.chr8.2536 Acer truncatum HOM05D001458 ORTHO05D006787 7.7e-23 110.9 112 56.2
AagrBONN_evm.TU.Sc2ySwM_228.407 Anthoceros agrestis HOM05D001458 ORTHO05D006787 1.3e-22 110.2 140 42.1
COL.COLO4_22276 Corchorus olitorius HOM05D001458 ORTHO05D006787 2.9e-22 109.0 123 47.2
Lj5g0003554 Lotus japonicus HOM05D001458 ORTHO05D006787 4.7e-20 101.7 132 44.7
Cre02.g084800 Chlamydomonas reinhardtii HOM05D001458 ORTHO05D006787 1.0e-19 100.5 128 42.2
PRCOL_00005653 Prasinoderma coloniale HOM05D001458 ORTHO05D006787 2.3e-19 99.4 140 39.3
CBR_g20285 Chara braunii HOM05D001458 ORTHO05D006787 5.2e-19 98.2 112 48.2
MCO01G458 Micromonas commoda HOM05D001458 ORTHO05D006787 6.8e-19 97.8 128 39.1
Cpa.g.sc45.25 Carica papaya HOM05D001458 ORTHO05D006787 9.7e-18 94.0 94 52.1
CDE04G2715 Ceratophyllum demersum HOM05D001458 ORTHO05D006787 2.7e-15 85.9 118 44.1
FvH4_4g12771 Fragaria vesca HOM05D001458 ORTHO05D035488 4.7e-12 75.1 131 37.4
RcHm_v2.0_Chr3g0453711 Rosa chinensis HOM05D001458 ORTHO05D035256 1.4e-11 73.6 144 31.2
FAN19G2533 Fragaria x ananassa HOM05D001458 ORTHO05D006787 5.2e-11 71.6 108 42.6
COL.COLO4_22275 Corchorus olitorius HOM05D001458 ORTHO05D006787 3.4e-10 68.9 96 42.7
TPR.G31630 Trifolium pratense HOM05D001458 ORTHO05D008462 1.8e-08 63.2 138 27.5
Prupe.4G125600 Prunus persica HOM05D001458 ORTHO05D006787 2.4e-08 62.8 100 38.0
Migut.A00719 Erythranthe guttata HOM05D001458 ORTHO05D008462 3.1e-08 62.4 117 35.0
Zm00001eb172550 Zea mays HOM05D001458 ORTHO05D008462 3.1e-08 62.4 118 31.4
CBR_g19885 Chara braunii HOM05D001458 ORTHO05D008462 4.1e-08 62.0 139 29.5
FvH4_6g05151 Fragaria vesca HOM05D001458 ORTHO05D035256 4.1e-08 62.0 140 30.7
RcHm_v2.0_Chr2g0086091 Rosa chinensis HOM05D001458 ORTHO05D020639 5.4e-08 61.6 124 33.1
SGA_v2.0_scaffold146G36265 Striga asiatica HOM05D001458 ORTHO05D008462 5.4e-08 61.6 89 37.1
SGA_v2.0_scaffold329G48826 Striga asiatica HOM05D001458 ORTHO05D008462 5.4e-08 61.6 89 37.1
CAN.G532.40 Capsicum annuum HOM05D001458 ORTHO05D008462 7.0e-08 61.2 120 31.7
RhsimUnG0086200 Rhododendron simsii HOM05D001458 ORTHO05D006787 9.1e-08 60.8 107 33.6
BcaB05g21865 Brassica carinata HOM05D001458 ORTHO05D008462 1.2e-07 60.5 44 65.9
Oeu059490.1 Olea europaea HOM05D001458 ORTHO05D008462 1.6e-07 60.1 128 29.7
RcHm_v2.0_Chr5g0010071 Rosa chinensis HOM05D001458 ORTHO05D006787 1.6e-07 60.1 121 31.4
Os08g0156900 Oryza sativa ssp. japonica HOM05D001458 ORTHO05D008462 2.0e-07 59.7 119 31.9
RcHm_v2.0_Chr5g0083311 Rosa chinensis HOM05D001458 ORTHO05D020639 3.5e-07 58.9 131 29.8
Lsat_1_v5_gn_6_4261 Lactuca sativa HOM05D001458 ORTHO05D008462 5.9e-07 58.2 83 38.6
TPR.G22713 Trifolium pratense HOM05D001458 ORTHO05D006787 1.0e-06 57.4 54 44.4
FvH4_3g06051 Fragaria vesca HOM05D001458 ORTHO05D035488 1.3e-06 57.0 104 36.5
Medtr5g084590 Medicago truncatula HOM05D001458 ORTHO05D006787 1.3e-06 57.0 112 31.2
RcHm_v2.0_Chr2g0089851 Rosa chinensis HOM05D001458 ORTHO05D020639 1.3e-06 57.0 124 30.6
TWI60G1516 Tripterygium wilfordii HOM05D001458 ORTHO05D008462 1.3e-06 57.0 147 29.9
ATR0661G491 Amborella trichopoda HOM05D001458 ORTHO05D008462 1.7e-06 56.6 117 30.8
Sopen08g029900 Solanum pennellii HOM05D001458 ORTHO05D008462 1.7e-06 56.6 118 28.8
Lj6g0023100 Lotus japonicus HOM05D003976 ORTHO05D004711 2.9e-06 55.8 143 29.4
PSO478G0962 Papaver somniferum HOM05D001458 ORTHO05D008462 2.9e-06 55.8 149 28.9
TAR375G0317 Trochodendron aralioides HOM05D001458 ORTHO05D008462 2.9e-06 55.8 126 31.7
Manes.10G032400 Manihot esculenta HOM05D001458 ORTHO05D008462 3.8e-06 55.5 94 36.2
Os03g0752200 Oryza sativa ssp. japonica HOM05D001458 ORTHO05D007170 3.8e-06 55.5 92 32.6
PSO210G1564 Papaver somniferum HOM05D001458 ORTHO05D007170 3.8e-06 55.5 134 29.9
Hund15092 Selenicereus undatus HOM05D001458 ORTHO05D008462 3.8e-06 55.5 88 37.5
RcHm_v2.0_Chr2g0089291 Rosa chinensis HOM05D001458 ORTHO05D020639 5.0e-06 55.1 128 28.1
AUR62024460 Chenopodium quinoa HOM05D001458 ORTHO05D008462 6.6e-06 54.7 94 36.2
AUR62026049 Chenopodium quinoa HOM05D001458 ORTHO05D008462 6.6e-06 54.7 94 36.2
PSO210G4199 Papaver somniferum HOM05D001458 ORTHO05D007170 6.6e-06 54.7 114 34.2
SEGI_24669 Sequoiadendron giganteum HOM05D001458 ORTHO05D007170 6.6e-06 54.7 92 32.6
arahy.Tifrunner.gnm1.ann1.8L89DK Arachis hypogaea HOM05D001458 ORTHO05D008462 8.6e-06 54.3 89 36.0
MD08G1212100 Malus domestica HOM05D001458 ORTHO05D006787 8.6e-06 54.3 101 30.7
Mapoly0030s0084 Marchantia polymorpha HOM05D001458 ORTHO05D008462 8.6e-06 54.3 130 30.8
QL12p031785 Quercus lobata HOM05D001458 ORTHO05D008462 8.6e-06 54.3 118 28.0
HPP92_025464 Vanilla planifolia HOM05D001458 ORTHO05D008462 8.6e-06 54.3 91 33.0


User provided reference genes

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