Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0084s0047 Marchantia polymorpha HOM05D001605 ORTHO05D003014 2.8e-168 595.5 370 100.0
CDE07G1070 Ceratophyllum demersum HOM05D001605 ORTHO05D003014 1.1e-15 88.6 117 39.3
Mapoly0027s0102 Marchantia polymorpha HOM05D001605 ORTHO05D003014 1.9e-15 87.8 107 39.3
CSS0028371 Camellia sinensis var. sinensis HOM05D001605 ORTHO05D003014 7.2e-15 85.9 105 41.9
THA.LOC104798874 Tarenaya hassleriana HOM05D001605 ORTHO05D003014 7.2e-15 85.9 115 33.9
ATR0665G314 Amborella trichopoda HOM05D001605 ORTHO05D003014 1.6e-14 84.7 105 40.0
Hund26733 Selenicereus undatus HOM05D001605 ORTHO05D003014 2.1e-14 84.3 105 39.0
Carub.0004s1584 Capsella rubella HOM05D001605 ORTHO05D003014 3.6e-14 83.6 115 33.9
Os06g0208300 Oryza sativa ssp. japonica HOM05D001605 ORTHO05D003014 3.6e-14 83.6 106 41.5
AL6G42110 Arabidopsis lyrata HOM05D001605 ORTHO05D003014 4.6e-14 83.2 114 36.8
BraA03t11162Z Brassica rapa HOM05D001605 ORTHO05D003014 6.1e-14 82.8 115 32.2
CARHR259450 Cardamine hirsuta HOM05D001605 ORTHO05D003014 6.1e-14 82.8 114 35.1
MBI04_g13672_MAGBIO Magnolia biondii HOM05D001605 ORTHO05D003014 6.1e-14 82.8 106 39.6
AT4G08350 Arabidopsis thaliana HOM05D001605 ORTHO05D003014 7.9e-14 82.4 114 36.0
Migut.C01045 Erythranthe guttata HOM05D001605 ORTHO05D003014 7.9e-14 82.4 105 35.2
HanXRQChr04g0125191 Helianthus annuus HOM05D001605 ORTHO05D003014 7.9e-14 82.4 109 35.8
THA.LOC104806843 Tarenaya hassleriana HOM05D001605 ORTHO05D003014 7.9e-14 82.4 115 34.8
Lj4C691T3 Lonicera japonica HOM05D001605 ORTHO05D003014 1.0e-13 82.0 105 39.0
Nn5g28614 Nelumbo nucifera HOM05D001605 ORTHO05D003014 1.0e-13 82.0 105 36.2
SEGI_21526 Sequoiadendron giganteum HOM05D001605 ORTHO05D003014 1.0e-13 82.0 115 34.8
Ah.05g167510 Amaranthus hybridus HOM05D001605 ORTHO05D003014 1.4e-13 81.6 116 35.3
EL10Ac1g01470 Beta vulgaris HOM05D001605 ORTHO05D003014 1.4e-13 81.6 105 37.1
CiPaw.16G018200 Carya illinoinensis HOM05D001605 ORTHO05D003014 1.4e-13 81.6 115 34.8
Dinv25801 Davidia involucrata HOM05D001605 ORTHO05D003014 1.4e-13 81.6 105 38.1
Pp3c16_360 Physcomitrium patens HOM05D001605 ORTHO05D003014 1.4e-13 81.6 105 36.2
AagrBONN_evm.TU.Sc2ySwM_369.275 Anthoceros agrestis HOM05D001605 ORTHO05D003014 1.8e-13 81.3 113 35.4
Oeu001561.1 Olea europaea HOM05D001605 ORTHO05D003014 1.8e-13 81.3 116 38.8
Sabra09G0095400 Salix brachista HOM05D001605 ORTHO05D003014 1.8e-13 81.3 130 31.5
Dinv41129 Davidia involucrata HOM05D001605 ORTHO05D003014 2.3e-13 80.9 105 38.1
Hma1.2p1_0107F.1_g051400 Hydrangea macrophylla HOM05D001605 ORTHO05D003014 2.3e-13 80.9 105 37.1
Sp4g16520 Schrenkiella parvula HOM05D001605 ORTHO05D003014 2.3e-13 80.9 108 34.3
TAR625G1035 Trochodendron aralioides HOM05D001605 ORTHO05D003014 2.3e-13 80.9 122 38.5
Actinidia16593 Actinidia chinensis HOM05D001605 ORTHO05D003014 3.0e-13 80.5 105 38.1
BcaC01g05804 Brassica carinata HOM05D001605 ORTHO05D003014 3.0e-13 80.5 117 33.3
C03p22230 Brassica napus HOM05D001605 ORTHO05D003014 3.0e-13 80.5 117 33.3
BolC3t14607H Brassica oleracea HOM05D001605 ORTHO05D003014 3.0e-13 80.5 117 33.3
Actinidia15162 Actinidia chinensis HOM05D001605 ORTHO05D003014 3.9e-13 80.1 105 36.2
A03p19040 Brassica napus HOM05D001605 ORTHO05D003014 3.9e-13 80.1 115 31.3
Cpa.g.sc188.8 Carica papaya HOM05D001605 ORTHO05D003014 3.9e-13 80.1 105 37.1
AUR62026789 Chenopodium quinoa HOM05D001605 ORTHO05D003014 3.9e-13 80.1 105 36.2
Carub.0006s2691 Capsella rubella HOM05D001605 ORTHO05D003014 5.1e-13 79.7 114 33.3
Cc10_g12970 Coffea canephora HOM05D001605 ORTHO05D003014 5.1e-13 79.7 108 37.0
MELO3C008414.2 Cucumis melo HOM05D001605 ORTHO05D003014 5.1e-13 79.7 120 34.2
DCAR_010233 Daucus carota HOM05D001605 ORTHO05D003014 5.1e-13 79.7 104 38.5
Potri.009G124200 Populus trichocarpa HOM05D001605 ORTHO05D003014 5.1e-13 79.7 105 36.2
Sed0025239 Sechium edule HOM05D001605 ORTHO05D003014 5.1e-13 79.7 105 39.0
PSO063G1730 Papaver somniferum HOM05D001605 ORTHO05D003014 6.7e-13 79.3 105 37.1
PSO782G0565 Papaver somniferum HOM05D001605 ORTHO05D003014 6.7e-13 79.3 105 37.1
Pp3c25_8110 Physcomitrium patens HOM05D001605 ORTHO05D003014 6.7e-13 79.3 105 35.2
HPP92_021877 Vanilla planifolia HOM05D001605 ORTHO05D003014 6.7e-13 79.3 103 40.8
Zm00001eb373500 Zea mays HOM05D001605 ORTHO05D003014 6.7e-13 79.3 106 39.6
ClCG08G006430 Citrullus lanatus HOM05D001605 ORTHO05D003014 8.8e-13 79.0 105 36.2
CsaV3_6G031000 Cucumis sativus L. HOM05D001605 ORTHO05D003014 8.8e-13 79.0 105 36.2
Thhalv10028382m.g Eutrema salsugineum HOM05D001605 ORTHO05D003014 8.8e-13 79.0 114 34.2
Potri.004G162500 Populus trichocarpa HOM05D001605 ORTHO05D003014 8.8e-13 79.0 105 37.1
Rhsim06G0090800 Rhododendron simsii HOM05D001605 ORTHO05D003014 8.8e-13 79.0 105 38.1
BcaB01g02866 Brassica carinata HOM05D001605 ORTHO05D003014 1.1e-12 78.6 114 32.5
BcaC01g04775 Brassica carinata HOM05D001605 ORTHO05D003014 1.1e-12 78.6 114 32.5
C03p33860 Brassica napus HOM05D001605 ORTHO05D003014 1.1e-12 78.6 114 32.5
BolC3t15701H Brassica oleracea HOM05D001605 ORTHO05D003014 1.1e-12 78.6 114 32.5
CBR_g27949 Chara braunii HOM05D001605 ORTHO05D003014 1.1e-12 78.6 107 35.5
AUR62013483 Chenopodium quinoa HOM05D001605 ORTHO05D003014 1.1e-12 78.6 105 34.3
Manes.18G086700 Manihot esculenta HOM05D001605 ORTHO05D003014 1.1e-12 78.6 105 35.2
SalBow7G2351 Salvia bowleyana HOM05D001605 ORTHO05D003014 1.1e-12 78.6 105 35.2
unitig_748.g7696 Utricularia gibba HOM05D001605 ORTHO05D003014 1.1e-12 78.6 104 36.5
MSTRG.1376 Avicennia marina HOM05D001605 ORTHO05D003014 1.5e-12 78.2 119 35.3
Nitab4.5_0010232g0010 Nicotiana tabacum HOM05D001605 ORTHO05D003014 1.5e-12 78.2 101 35.6
Sed0025518 Sechium edule HOM05D001605 ORTHO05D003014 1.5e-12 78.2 107 38.3
ECA247G0063 Erigeron canadensis HOM05D001605 ORTHO05D003014 2.0e-12 77.8 88 42.0
Lsat_1_v5_gn_3_132801 Lactuca sativa HOM05D001605 ORTHO05D003014 2.0e-12 77.8 105 37.1
Sp6g09600 Schrenkiella parvula HOM05D001605 ORTHO05D003014 2.0e-12 77.8 114 32.5
BcaB01g01341 Brassica carinata HOM05D001605 ORTHO05D003014 2.5e-12 77.4 114 32.5
A03p27980 Brassica napus HOM05D001605 ORTHO05D003014 2.5e-12 77.4 114 31.6
BraA03t12015Z Brassica rapa HOM05D001605 ORTHO05D003014 2.5e-12 77.4 114 31.6
Peaxi162Scf00263g00122 Petunia axillaris HOM05D001605 ORTHO05D003014 2.5e-12 77.4 105 35.2
Aa31LG9G14140 Aethionema arabicum HOM05D001605 ORTHO05D003014 3.3e-12 77.0 114 33.3
arahy.Tifrunner.gnm1.ann1.E7CKP3 Arachis hypogaea HOM05D001605 ORTHO05D003014 3.3e-12 77.0 123 33.3
TWI34G1926 Tripterygium wilfordii HOM05D001605 ORTHO05D003014 3.3e-12 77.0 105 34.3
Gohir.A05G269500 Gossypium hirsutum HOM05D001605 ORTHO05D003014 4.3e-12 76.6 121 33.9
Gohir.D05G271600 Gossypium hirsutum HOM05D001605 ORTHO05D003014 4.3e-12 76.6 121 33.9
Gorai.009G284500 Gossypium raimondii HOM05D001605 ORTHO05D003014 4.3e-12 76.6 121 33.9
arahy.Tifrunner.gnm1.ann1.SUKE0C Arachis hypogaea HOM05D001605 ORTHO05D003014 7.4e-12 75.9 105 36.2
arahy.Tifrunner.gnm1.ann1.XKFQ8F Arachis hypogaea HOM05D001605 ORTHO05D003014 7.4e-12 75.9 105 36.2
BcaB01g03900 Brassica carinata HOM05D001605 ORTHO05D003014 7.4e-12 75.9 115 30.4
CANSAT25G3051 Cannabis sativa HOM05D001605 ORTHO05D003014 7.4e-12 75.9 105 35.2
Solyc04g064700.4 Solanum lycopersicum HOM05D001605 ORTHO05D003014 7.4e-12 75.9 105 34.3
Sopen04g026660 Solanum pennellii HOM05D001605 ORTHO05D003014 7.4e-12 75.9 105 34.3
PGSC0003DMG402024850 Solanum tuberosum HOM05D001605 ORTHO05D003014 7.4e-12 75.9 105 34.3
SGA_v2.0_scaffold48G17942 Striga asiatica HOM05D001605 ORTHO05D003014 7.4e-12 75.9 108 33.3
AL4G30140 Arabidopsis lyrata HOM05D001605 ORTHO05D003014 9.7e-12 75.5 103 32.0
BraA09t38589Z Brassica rapa HOM05D001605 ORTHO05D003014 9.7e-12 75.5 112 32.1
Manes.02G174700 Manihot esculenta HOM05D001605 ORTHO05D003014 9.7e-12 75.5 105 33.3
TWI60G0151 Tripterygium wilfordii HOM05D001605 ORTHO05D003014 9.7e-12 75.5 105 36.2
A09p30220 Brassica napus HOM05D001605 ORTHO05D003014 1.3e-11 75.1 114 31.6
vmacro01512 Vaccinium macrocarpon HOM05D001605 ORTHO05D003014 1.7e-11 74.7 105 34.3
FvH4_2g14770 Fragaria vesca HOM05D001605 ORTHO05D003014 2.2e-11 74.3 105 35.2
FAN15G1258 Fragaria x ananassa HOM05D001605 ORTHO05D003014 2.2e-11 74.3 105 35.2
FAN20G0370 Fragaria x ananassa HOM05D001605 ORTHO05D003014 2.2e-11 74.3 105 35.2
FAN24G3135 Fragaria x ananassa HOM05D001605 ORTHO05D003014 2.2e-11 74.3 105 35.2
Gohir.D02G073200 Gossypium hirsutum HOM05D001605 ORTHO05D003014 2.2e-11 74.3 105 33.3
GSVIVG01010022001 Vitis vinifera HOM05D001605 ORTHO05D003014 2.2e-11 74.3 115 33.0
COL.COLO4_08860 Corchorus olitorius HOM05D001605 ORTHO05D003014 2.8e-11 73.9 105 34.3
Haze_17697 Corylus avellana HOM05D001605 ORTHO05D003014 2.8e-11 73.9 105 34.3
QL02p025489 Quercus lobata HOM05D001605 ORTHO05D003014 2.8e-11 73.9 105 33.3
Lalb_Chr23g0271331 Lupinus albus HOM05D001605 ORTHO05D003014 3.7e-11 73.6 105 34.3
Nitab4.5_0000445g0150 Nicotiana tabacum HOM05D001605 ORTHO05D003014 3.7e-11 73.6 105 31.4
Thecc.08G143700 Theobroma cacao HOM05D001605 ORTHO05D003014 3.7e-11 73.6 105 33.3
BcaC04g20905 Brassica carinata HOM05D001605 ORTHO05D003014 4.8e-11 73.2 114 30.7
C09p38130 Brassica napus HOM05D001605 ORTHO05D003014 4.8e-11 73.2 114 30.7
BolC9t56650H Brassica oleracea HOM05D001605 ORTHO05D003014 4.8e-11 73.2 114 30.7
Cfa018371 Carpinus fangiana HOM05D001605 ORTHO05D003014 4.8e-11 73.2 105 33.3
Gohir.A02G067000 Gossypium hirsutum HOM05D001605 ORTHO05D003014 4.8e-11 73.2 105 33.3
Gorai.005G082600 Gossypium raimondii HOM05D001605 ORTHO05D003014 4.8e-11 73.2 105 32.4
MD05G1013100 Malus domestica HOM05D001605 ORTHO05D003014 4.8e-11 73.2 105 34.3
Aqoxy3G04296 Aquilegia oxysepala HOM05D001605 ORTHO05D003014 6.3e-11 72.8 105 34.3
TAR381G0699 Trochodendron aralioides HOM05D001605 ORTHO05D003014 6.3e-11 72.8 122 33.6
Lalb_Chr11g0066411 Lupinus albus HOM05D001605 ORTHO05D003014 8.2e-11 72.4 105 34.3
RcHm_v2.0_Chr6g0277331 Rosa chinensis HOM05D001605 ORTHO05D003014 8.2e-11 72.4 105 34.3
Ca_16648_v3 Cicer arietinum L. HOM05D001605 ORTHO05D003014 1.1e-10 72.0 105 35.2
Duzib116G0915 Durio zibethinus HOM05D001605 ORTHO05D003014 1.1e-10 72.0 105 32.4
Lj1g0017948 Lotus japonicus HOM05D001605 ORTHO05D003014 1.1e-10 72.0 105 33.3
Lalb_Chr08g0240791 Lupinus albus HOM05D001605 ORTHO05D003014 1.1e-10 72.0 105 34.3
Eucgr.F02745 Eucalyptus grandis HOM05D001605 ORTHO05D003014 1.4e-10 71.6 105 37.1
Glyma.04G240900 Glycine max HOM05D001605 ORTHO05D003014 1.4e-10 71.6 105 35.2
Nitab4.5_0009413g0010 Nicotiana tabacum HOM05D001605 ORTHO05D003014 1.4e-10 71.6 102 30.4
PGR042G1363 Punica granatum HOM05D001605 ORTHO05D003014 1.4e-10 71.6 105 32.4
vmacro21127 Vaccinium macrocarpon HOM05D001605 ORTHO05D003014 1.4e-10 71.6 105 36.2
Gohir.D05G242900 Gossypium hirsutum HOM05D001605 ORTHO05D003014 1.8e-10 71.2 111 30.6
Rhsim12G0009500 Rhododendron simsii HOM05D001605 ORTHO05D003014 1.8e-10 71.2 105 36.2
VMungo1309G2477 Vigna mungo HOM05D001605 ORTHO05D003014 1.8e-10 71.2 105 35.2
Psat5g080840 Pisum sativum HOM05D001605 ORTHO05D003014 2.4e-10 70.9 105 34.3
DCAR_001109 Daucus carota HOM05D001605 ORTHO05D003014 3.1e-10 70.5 103 35.0
Gorai.009G252200 Gossypium raimondii HOM05D001605 ORTHO05D003014 3.1e-10 70.5 105 31.4
Ciclev10000121m.g Citrus clementina HOM05D001605 ORTHO05D003014 4.1e-10 70.1 105 31.4
ECA240G4004 Erigeron canadensis HOM05D001605 ORTHO05D003014 4.1e-10 70.1 109 35.8
Phvul.009G134600 Phaseolus vulgaris HOM05D001605 ORTHO05D003014 5.3e-10 69.7 105 34.3
Prupe.8G018000 Prunus persica HOM05D001605 ORTHO05D003014 5.3e-10 69.7 105 32.4
Glyma.06G122500 Glycine max HOM05D001605 ORTHO05D003014 9.1e-10 68.9 105 33.3
MD10G1013600 Malus domestica HOM05D001605 ORTHO05D003014 9.1e-10 68.9 105 33.3
TPR.G819 Trifolium pratense HOM05D001605 ORTHO05D003014 9.1e-10 68.9 105 33.3
AT2G34210 Arabidopsis thaliana HOM05D001605 ORTHO05D003014 1.2e-09 68.6 103 29.1
Duzib041G0436 Durio zibethinus HOM05D001605 ORTHO05D003014 1.2e-09 68.6 105 31.4
Atru.chr13.1705 Acer truncatum HOM05D001605 ORTHO05D003014 5.9e-09 66.2 108 32.4
QL07p038796 Quercus lobata HOM05D001605 ORTHO05D003014 7.7e-09 65.9 106 34.9
QL07p039046 Quercus lobata HOM05D001605 ORTHO05D003014 7.7e-09 65.9 106 34.9
Lsat_1_v5_gn_2_107160 Lactuca sativa HOM05D001605 ORTHO05D003014 1.3e-08 65.1 90 35.6
Hma1.2p1_1530F.1_g289170 Hydrangea macrophylla HOM05D001605 ORTHO05D003014 2.2e-08 64.3 110 34.5
SMO137G0201 Selaginella moellendorffii HOM05D001605 ORTHO05D003014 2.2e-08 64.3 115 30.4
Medtr3g089910 Medicago truncatula HOM05D001605 ORTHO05D003014 3.8e-08 63.5 106 32.1
CAN.G1045.24 Capsicum annuum HOM05D001605 ORTHO05D003014 6.5e-08 62.8 104 30.8
SMO162G0003 Selaginella moellendorffii HOM05D001605 ORTHO05D003014 1.9e-07 61.2 105 31.4
Medtr1g023870 Medicago truncatula HOM05D001605 ORTHO05D003014 7.2e-07 59.3 103 31.1
QL12p037358 Quercus lobata HOM05D001605 ORTHO05D003014 2.7e-06 57.4 89 36.0
Lsat_1_v5_gn_7_47540 Lactuca sativa HOM05D001605 ORTHO05D003014 4.7e-06 56.6 102 30.4


User provided reference genes

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