Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0043s0062 Marchantia polymorpha HOM05D006570 ORTHO05D008193 0.0e+00 1221.8 623 100.0
Pp3c18_200 Physcomitrium patens HOM05D006570 ORTHO05D008193 1.1e-116 424.9 539 46.8
SEGI_12299 Sequoiadendron giganteum HOM05D006570 ORTHO05D008193 5.6e-105 386.0 500 43.6
arahy.Tifrunner.gnm1.ann1.L2UBUE Arachis hypogaea HOM05D006570 ORTHO05D008193 8.1e-104 382.1 558 41.0
Atru.chr6.3468 Acer truncatum HOM05D006570 ORTHO05D008193 1.1e-103 381.7 503 44.3
arahy.Tifrunner.gnm1.ann1.N5JW36 Arachis hypogaea HOM05D006570 ORTHO05D008193 1.1e-103 381.7 559 41.3
Dinv28772 Davidia involucrata HOM05D006570 ORTHO05D008193 2.4e-103 380.6 502 44.2
Hma1.2p1_0834F.1_g225720 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 1.5e-102 377.9 478 44.6
TPR.G5123 Trifolium pratense HOM05D006570 ORTHO05D008193 3.8e-101 373.2 516 42.1
Glyma.07G059700 Glycine max HOM05D006570 ORTHO05D008193 4.9e-101 372.9 519 42.2
HanXRQChr16g0508391 Helianthus annuus HOM05D006570 ORTHO05D008193 1.4e-100 371.3 382 52.1
Solyc09g018850.3 Solanum lycopersicum HOM05D006570 ORTHO05D008193 1.4e-100 371.3 512 42.6
RcHm_v2.0_Chr5g0052821 Rosa chinensis HOM05D006570 ORTHO05D008193 4.2e-100 369.8 385 51.4
Ciclev10015195m.g Citrus clementina HOM05D006570 ORTHO05D008193 7.1e-100 369.0 500 43.0
Cc01_g15710 Coffea canephora HOM05D006570 ORTHO05D008193 7.1e-100 369.0 410 48.5
Sopen09g012610 Solanum pennellii HOM05D006570 ORTHO05D008193 7.1e-100 369.0 512 42.4
Oeu020442.2 Olea europaea HOM05D006570 ORTHO05D008193 9.3e-100 368.6 550 41.1
Phvul.010G109900 Phaseolus vulgaris HOM05D006570 ORTHO05D008193 9.3e-100 368.6 527 41.6
Ah.11g050650 Amaranthus hybridus HOM05D006570 ORTHO05D008193 1.2e-99 368.2 388 51.3
ECA236G3480 Erigeron canadensis HOM05D006570 ORTHO05D008193 1.2e-99 368.2 378 52.9
PSO170G2695 Papaver somniferum HOM05D006570 ORTHO05D008193 2.1e-99 367.5 538 42.4
CANSAT01G0840 Cannabis sativa HOM05D006570 ORTHO05D008193 2.7e-99 367.1 403 50.6
Cpa.g.sc8.9 Carica papaya HOM05D006570 ORTHO05D008193 2.7e-99 367.1 517 42.9
Peaxi162Scf12724g00014 Petunia axillaris HOM05D006570 ORTHO05D008193 2.7e-99 367.1 366 51.9
Nitab4.5_0005967g0010 Nicotiana tabacum HOM05D006570 ORTHO05D008193 3.5e-99 366.7 514 42.0
PGSC0003DMG400020287 Solanum tuberosum HOM05D006570 ORTHO05D008193 4.6e-99 366.3 529 40.8
ATR0743G076 Amborella trichopoda HOM05D006570 ORTHO05D008193 6.0e-99 365.9 393 50.4
Aqoxy7G03970 Aquilegia oxysepala HOM05D006570 ORTHO05D008193 6.0e-99 365.9 507 43.4
Lj3g0023743 Lotus japonicus HOM05D006570 ORTHO05D008193 6.0e-99 365.9 513 42.3
Ca_23570_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 1.3e-98 364.8 560 39.8
Ca_23579_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 1.3e-98 364.8 560 39.8
Manes.13G058200 Manihot esculenta HOM05D006570 ORTHO05D008193 1.3e-98 364.8 393 50.9
VMungo0331G0798 Vigna mungo HOM05D006570 ORTHO05D008193 1.3e-98 364.8 393 49.9
Actinidia11648 Actinidia chinensis HOM05D006570 ORTHO05D008193 6.7e-98 362.5 388 51.5
Potri.014G198000 Populus trichocarpa HOM05D006570 ORTHO05D008193 6.7e-98 362.5 578 40.8
PGR083G1749 Punica granatum HOM05D006570 ORTHO05D008193 6.7e-98 362.5 517 42.6
Thecc.01G203700 Theobroma cacao HOM05D006570 ORTHO05D008193 8.7e-98 362.1 504 43.3
CsaV3_6G007600 Cucumis sativus L. HOM05D006570 ORTHO05D008193 2.5e-97 360.5 518 42.3
GSVIVG01004124001 Vitis vinifera HOM05D006570 ORTHO05D008193 2.5e-97 360.5 368 51.4
CiPaw.07G077200 Carya illinoinensis HOM05D006570 ORTHO05D008193 3.3e-97 360.1 517 41.8
MD15G1141300 Malus domestica HOM05D006570 ORTHO05D008193 4.3e-97 359.8 373 53.4
COL.COLO4_19720 Corchorus olitorius HOM05D006570 ORTHO05D008193 5.7e-97 359.4 368 52.2
CDE09G0147 Ceratophyllum demersum HOM05D006570 ORTHO05D008193 7.4e-97 359.0 485 43.9
Lalb_Chr10g0100201 Lupinus albus HOM05D006570 ORTHO05D008193 7.4e-97 359.0 529 41.6
Haze_04512 Corylus avellana HOM05D006570 ORTHO05D008193 9.6e-97 358.6 392 49.7
Aqoxy1G01428 Aquilegia oxysepala HOM05D006570 ORTHO05D008193 1.6e-96 357.8 568 40.1
TAR362G0032 Trochodendron aralioides HOM05D006570 ORTHO05D008193 2.1e-96 357.5 398 49.2
MBI10_g46813_MAGBIO Magnolia biondii HOM05D006570 ORTHO05D008193 2.8e-96 357.1 389 49.9
TWI18G1431 Tripterygium wilfordii HOM05D006570 ORTHO05D008193 2.8e-96 357.1 380 52.1
FvH4_3g28500 Fragaria vesca HOM05D006570 ORTHO05D008193 4.8e-96 356.3 384 51.3
Medtr8g028105 Medicago truncatula HOM05D006570 ORTHO05D008193 4.8e-96 356.3 441 45.4
Cfa006298 Carpinus fangiana HOM05D006570 ORTHO05D008193 6.3e-96 355.9 393 49.6
DCAR_012712 Daucus carota HOM05D006570 ORTHO05D008193 8.2e-96 355.5 397 51.1
Lj2A1109T67 Lonicera japonica HOM05D006570 ORTHO05D008193 8.2e-96 355.5 389 50.1
Os12g0211400 Oryza sativa ssp. japonica HOM05D006570 ORTHO05D008193 1.1e-95 355.1 391 49.1
CAN.G3.13 Capsicum annuum HOM05D006570 ORTHO05D008193 3.1e-95 353.6 390 48.7
FAN21G3910 Fragaria x ananassa HOM05D006570 ORTHO05D008193 3.1e-95 353.6 368 52.2
Gohir.D07G093500 Gossypium hirsutum HOM05D006570 ORTHO05D008193 3.1e-95 353.6 394 49.5
Gorai.001G100200 Gossypium raimondii HOM05D006570 ORTHO05D008193 3.1e-95 353.6 394 49.5
Migut.D00755 Erythranthe guttata HOM05D006570 ORTHO05D008193 4.1e-95 353.2 396 50.8
SalBow2G2795 Salvia bowleyana HOM05D006570 ORTHO05D008193 4.1e-95 353.2 389 49.1
Prupe.6G214800 Prunus persica HOM05D006570 ORTHO05D008193 5.3e-95 352.8 369 51.5
SalBow6G3933 Salvia bowleyana HOM05D006570 ORTHO05D008193 5.3e-95 352.8 397 48.9
Duzib133G0843 Durio zibethinus HOM05D006570 ORTHO05D008193 9.0e-95 352.1 389 50.1
vmacro02851 Vaccinium macrocarpon HOM05D006570 ORTHO05D008193 2.0e-94 350.9 391 50.6
AT4G12740 Arabidopsis thaliana HOM05D006570 ORTHO05D008193 7.6e-94 349.0 372 50.0
Hund09495 Selenicereus undatus HOM05D006570 ORTHO05D008193 1.0e-93 348.6 488 43.6
Aa31sc565G50 Aethionema arabicum HOM05D006570 ORTHO05D008193 1.3e-93 348.2 452 46.5
EL10Ac5g10565 Beta vulgaris HOM05D006570 ORTHO05D008193 2.2e-93 347.4 483 44.3
THA.LOC104815379 Tarenaya hassleriana HOM05D006570 ORTHO05D008193 3.8e-93 346.7 379 50.1
Nitab4.5_0009028g0030 Nicotiana tabacum HOM05D006570 ORTHO05D008193 5.0e-93 346.3 504 40.9
HPP92_007590 Vanilla planifolia HOM05D006570 ORTHO05D008193 6.5e-93 345.9 534 40.8
Psat4g158840 Pisum sativum HOM05D006570 ORTHO05D008193 8.5e-93 345.5 469 43.5
Sc05g0001500 Simmondsia chinensis HOM05D006570 ORTHO05D008193 1.1e-92 345.1 390 47.7
AL9U11910 Arabidopsis lyrata HOM05D006570 ORTHO05D008193 1.9e-92 344.4 372 49.7
C04p43140 Brassica napus HOM05D006570 ORTHO05D008193 1.9e-92 344.4 390 49.0
ClCG06G001630 Citrullus lanatus HOM05D006570 ORTHO05D008193 1.9e-92 344.4 371 49.6
Thhalv10024575m.g Eutrema salsugineum HOM05D006570 ORTHO05D008193 4.2e-92 343.2 490 41.2
BcaB03g16147 Brassica carinata HOM05D006570 ORTHO05D008193 5.5e-92 342.8 439 46.0
CARHR218120 Cardamine hirsuta HOM05D006570 ORTHO05D008193 5.5e-92 342.8 391 48.1
Sp7g09050 Schrenkiella parvula HOM05D006570 ORTHO05D008193 9.3e-92 342.0 457 44.9
Gohir.A07G088500 Gossypium hirsutum HOM05D006570 ORTHO05D008193 1.2e-91 341.7 391 48.3
Carub.0007s3008 Capsella rubella HOM05D006570 ORTHO05D008193 7.9e-91 339.0 372 48.9
A04p09180 Brassica napus HOM05D006570 ORTHO05D008193 2.3e-90 337.4 462 44.6
BcaC02g09469 Brassica carinata HOM05D006570 ORTHO05D008193 6.7e-90 335.9 450 45.1
Zm00001eb411200 Zea mays HOM05D006570 ORTHO05D008193 8.7e-90 335.5 370 49.2
SHI10196 Sapria himalayana HOM05D006570 ORTHO05D008193 4.3e-89 333.2 517 41.2
Os12g0212100 Oryza sativa ssp. japonica HOM05D006570 ORTHO05D008193 7.4e-89 332.4 324 54.9
Lsat_1_v5_gn_8_98640 Lactuca sativa HOM05D006570 ORTHO05D008193 1.1e-87 328.6 408 47.3
BolC4t25891H Brassica oleracea HOM05D006570 ORTHO05D008193 1.4e-87 328.2 494 40.3
AUR62008045 Chenopodium quinoa HOM05D006570 ORTHO05D008193 9.1e-87 325.5 548 38.0
AUR62032342 Chenopodium quinoa HOM05D006570 ORTHO05D008193 9.1e-87 325.5 548 38.0
AUR62028620 Chenopodium quinoa HOM05D006570 ORTHO05D008193 1.0e-85 322.0 548 37.8
BraA04t16613Z Brassica rapa HOM05D006570 ORTHO05D008193 2.2e-85 320.9 501 39.3
Sabra14G0132400 Salix brachista HOM05D006570 ORTHO05D008193 1.9e-84 317.8 660 34.8
Hma1.2p1_0834F.1_g225710 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 4.4e-81 306.6 445 41.6
MELO3C022371.2 Cucumis melo HOM05D006570 ORTHO05D008193 8.2e-80 302.4 524 38.5
Rhsim13G0056200 Rhododendron simsii HOM05D006570 ORTHO05D008193 1.2e-78 298.5 366 47.3
SMO202G0040 Selaginella moellendorffii HOM05D006570 ORTHO05D008193 1.1e-71 275.4 267 54.7
MCO12G048 Micromonas commoda HOM05D006570 ORTHO05D008193 3.1e-71 273.9 538 36.4
Hma1.2p1_1756F.1_g301050 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 4.5e-70 270.0 327 46.8
PRCOL_00001086 Prasinoderma coloniale HOM05D006570 ORTHO05D008193 1.2e-67 261.9 487 37.4
Actinidia23139 Actinidia chinensis HOM05D006570 ORTHO05D008193 3.0e-66 257.3 197 63.5
unitig_90.g27554 Utricularia gibba HOM05D006570 ORTHO05D008193 2.2e-64 251.1 442 40.7
FAN25G2405 Fragaria x ananassa HOM05D006570 ORTHO05D008193 1.8e-63 248.1 305 46.2
Eucgr.H00676 Eucalyptus grandis HOM05D006570 ORTHO05D008193 5.3e-63 246.5 318 45.0
MBI10_g40441_MAGBIO Magnolia biondii HOM05D006570 ORTHO05D008193 7.2e-60 236.1 328 43.0
Cre02.g082000 Chlamydomonas reinhardtii HOM05D006570 ORTHO05D008193 1.2e-59 235.3 342 42.1
Ca_29093_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 2.3e-42 177.9 318 36.2
CSS0008113 Camellia sinensis var. sinensis HOM05D006570 ORTHO05D008193 1.2e-41 175.6 126 65.1
CSS0032158 Camellia sinensis var. sinensis HOM05D006570 ORTHO05D008193 1.2e-41 175.6 126 65.1
FAN11G0847 Fragaria x ananassa HOM05D006570 ORTHO05D008193 4.9e-40 170.2 231 44.6
QL01p050877 Quercus lobata HOM05D006570 ORTHO05D008193 5.0e-37 160.2 283 37.1
DCAR_012713 Daucus carota HOM05D006570 ORTHO05D008193 8.9e-26 122.9 115 55.7
GSVIVG01038286001 Vitis vinifera HOM05D006570 ORTHO05D008193 3.7e-24 117.5 195 37.9
CDE02G1275 Ceratophyllum demersum HOM05D006570 ORTHO05D008193 2.4e-23 114.8 66 80.3
QL01p050896 Quercus lobata HOM05D006570 ORTHO05D008193 1.6e-22 112.1 66 75.8
CBR_g38520 Chara braunii HOM05D000019 ORTHO05D000048 8.1e-19 99.8 322 31.7
QL05p014599 Quercus lobata HOM05D006570 ORTHO05D008193 3.0e-13 81.3 119 44.5
PGR142G0081 Punica granatum HOM05D006570 ORTHO05D008193 2.5e-12 78.2 117 41.9
CBR_g38518 Chara braunii HOM05D000019 ORTHO05D000048 4.7e-11 73.9 139 34.5
QL05p014267 Quercus lobata HOM05D006570 ORTHO05D008193 6.4e-08 63.5 190 29.5
FAN12G1706 Fragaria x ananassa HOM05D004358 ORTHO05D004960 8.4e-08 63.2 191 27.7
Cfa015153 Carpinus fangiana HOM05D004358 ORTHO05D004960 1.1e-07 62.8 192 29.2
RcHm_v2.0_Chr4g0407021 Rosa chinensis HOM05D004358 ORTHO05D004960 1.1e-07 62.8 192 28.6
FvH4_4g10690 Fragaria vesca HOM05D004358 ORTHO05D004960 1.9e-07 62.0 191 27.2
FAN12G4165 Fragaria x ananassa HOM05D004358 ORTHO05D004960 1.9e-07 62.0 191 27.2
Solyc06g073400.3 Solanum lycopersicum HOM05D004358 ORTHO05D004960 1.9e-07 62.0 208 28.4
unitig_8.g4603 Utricularia gibba HOM05D004358 ORTHO05D004960 1.9e-07 62.0 186 26.9
Sp4g13930 Schrenkiella parvula HOM05D004358 ORTHO05D004960 2.4e-07 61.6 166 31.3
Eucgr.H00376 Eucalyptus grandis HOM05D004358 ORTHO05D004960 3.2e-07 61.2 157 29.9
PSO675G5046 Papaver somniferum HOM05D004358 ORTHO05D004960 3.2e-07 61.2 262 27.5
Manes.04G041200 Manihot esculenta HOM05D004358 ORTHO05D004960 4.2e-07 60.8 186 27.4
Hund03151 Selenicereus undatus HOM05D004358 ORTHO05D004960 4.2e-07 60.8 245 26.9
Haze_01520 Corylus avellana HOM05D004358 ORTHO05D004960 5.4e-07 60.5 158 30.4
Dinv22724 Davidia involucrata HOM05D004358 ORTHO05D004960 5.4e-07 60.5 208 27.4
Nitab4.5_0001787g0060 Nicotiana tabacum HOM05D004358 ORTHO05D004960 5.4e-07 60.5 191 28.8
PSO732G0278 Papaver somniferum HOM05D004358 ORTHO05D004960 7.1e-07 60.1 262 27.5
Sed0019525 Sechium edule HOM05D004358 ORTHO05D004960 7.1e-07 60.1 152 31.6
BcaC01g05950 Brassica carinata HOM05D004358 ORTHO05D004960 9.3e-07 59.7 172 30.2
C03p20720 Brassica napus HOM05D004358 ORTHO05D004960 9.3e-07 59.7 172 30.2
BolC3t14451H Brassica oleracea HOM05D004358 ORTHO05D004960 9.3e-07 59.7 172 30.2
FAN07G2248 Fragaria x ananassa HOM05D004358 ORTHO05D004960 9.3e-07 59.7 145 31.0
Pp3c17_17810 Physcomitrium patens HOM05D004358 ORTHO05D004960 9.3e-07 59.7 202 28.2
CAN.G65.181 Capsicum annuum HOM05D004358 ORTHO05D004960 1.2e-06 59.3 167 30.5
MELO3C017721.2 Cucumis melo HOM05D004358 ORTHO05D004960 1.2e-06 59.3 158 32.9
ECA236G3148 Erigeron canadensis HOM05D004358 ORTHO05D004960 1.2e-06 59.3 184 28.8
Peaxi162Scf00058g01717 Petunia axillaris HOM05D004358 ORTHO05D004960 1.2e-06 59.3 191 27.7
Aa31LG5G5430 Aethionema arabicum HOM05D004358 ORTHO05D004960 1.6e-06 58.9 206 28.2
Sopen06g029780 Solanum pennellii HOM05D004358 ORTHO05D004960 1.6e-06 58.9 208 27.9
AL4G26720 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 2.1e-06 58.5 160 29.4
Thhalv10016815m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 2.1e-06 58.5 166 31.3
Peaxi162Scf00375g00513 Petunia axillaris HOM05D004358 ORTHO05D004960 2.1e-06 58.5 207 27.5
Ah.13g072910 Amaranthus hybridus HOM05D004358 ORTHO05D004960 2.7e-06 58.2 162 29.6
Aqoxy7G00192 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 3.5e-06 57.8 174 28.7
A03p17630 Brassica napus HOM05D004358 ORTHO05D004960 3.5e-06 57.8 233 27.0
A09p67250 Brassica napus HOM05D004358 ORTHO05D004960 3.5e-06 57.8 183 30.1
BraA03t11028Z Brassica rapa HOM05D004358 ORTHO05D004960 3.5e-06 57.8 233 27.0
BraA09t42058Z Brassica rapa HOM05D004358 ORTHO05D005739 3.5e-06 57.8 183 30.1
Prupe.1G191600 Prunus persica HOM05D004358 ORTHO05D004960 3.5e-06 57.8 205 27.8
PGSC0003DMG401006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 3.5e-06 57.8 192 26.6
ClCG07G015600 Citrullus lanatus HOM05D004358 ORTHO05D004960 4.6e-06 57.4 158 30.4
Ciclev10020813m.g Citrus clementina HOM05D004358 ORTHO05D004960 4.6e-06 57.4 192 26.0
SalBow7G0323 Salvia bowleyana HOM05D004358 ORTHO05D004960 4.6e-06 57.4 170 28.2
Atru.chr3.1531 Acer truncatum HOM05D004358 ORTHO05D004960 6.0e-06 57.0 192 27.6
AT2G31450 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 6.0e-06 57.0 160 29.4
BcaB01g04044 Brassica carinata HOM05D004358 ORTHO05D004960 6.0e-06 57.0 232 26.7
Glyma.16G028601 Glycine max HOM05D006570 ORTHO05D008193 6.0e-06 57.0 116 28.4
HanXRQChr06g0172341 Helianthus annuus HOM05D004358 ORTHO05D004960 6.0e-06 57.0 186 26.3
Nitab4.5_0005570g0020 Nicotiana tabacum HOM05D004358 ORTHO05D004960 6.0e-06 57.0 151 31.1
PSO732G0822 Papaver somniferum HOM05D004358 ORTHO05D004960 6.0e-06 57.0 262 26.0
EL10Ac3g05922 Beta vulgaris HOM05D004358 ORTHO05D004960 7.8e-06 56.6 186 29.6
Carub.0004s1278 Capsella rubella HOM05D004358 ORTHO05D004960 7.8e-06 56.6 160 28.8
CAN.G749.19 Capsicum annuum HOM05D004358 ORTHO05D004960 7.8e-06 56.6 152 29.6
CARHR125100 Cardamine hirsuta HOM05D004358 ORTHO05D004960 7.8e-06 56.6 172 29.1
QL10p048514 Quercus lobata HOM05D004358 ORTHO05D004960 7.8e-06 56.6 152 28.9


User provided reference genes

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