Gene: Solyc09g018850.3
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc09g018850.3
- Transcript Identifier Solyc09g018850.3.1
- Gene Type Coding gene
- Location SL4.0ch09 : 17715926-17718904 : positive
Gene Family Information
- ID HOM05D006570
- #Genes/#Species 122/94
- Phylogenetic origin
- ID ORTHO05D008193
- #Genes/#Species 122/94
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Solyc09g018850.3.1
- uniprot A0A3Q7IWD1
- gene_id Solyc09g018850
Descriptions
- Description A/G-specific adenine DNA glycosylase (AHRD V3.3 *** A0A2G3BL05_CAPCH)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0008152 | IEA | GOA Database | metabolic process | |
GO:0006298 | IBA | GOA Database | mismatch repair | |
GO:0006284 | IBA IEA | GOA Database | base-excision repair | |
GO:0006284 | IEA | InterPro | base-excision repair | |
GO:0006974 | IEA | GOA Database | cellular response to DNA damage stimulus | |
GO:0006281 | IEA | GOA Database | DNA repair | |
GO:0006281 | IEA | InterPro | DNA repair |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0032357 | IBA | GOA Database | oxidized purine DNA binding | |
GO:0035485 | IBA | GOA Database | adenine/guanine mispair binding | |
GO:0034039 | IBA | GOA Database | 8-oxo-7,8-dihydroguanine DNA N-glycosylase activity | |
GO:0000701 | IBA IEA | GOA Database | purine-specific mismatch base pair DNA N-glycosylase activity | |
GO:0019104 | IEA | GOA Database | DNA N-glycosylase activity | |
GO:0019104 | IEA | InterPro | DNA N-glycosylase activity | |
GO:0003677 | IEA | GOA Database | DNA binding | |
GO:0003677 | IEA | InterPro | DNA binding | |
GO:0003824 | IEA | GOA Database | catalytic activity | |
GO:0003824 | IEA | InterPro | catalytic activity | |
GO:0016787 | IEA | GOA Database | hydrolase activity | |
GO:0016798 | IEA | GOA Database | hydrolase activity, acting on glycosyl bonds | |
GO:0016798 | IEA | InterPro | hydrolase activity, acting on glycosyl bonds | |
GO:0051536 | IEA | GOA Database | iron-sulfur cluster binding | |
GO:0046872 | IEA | GOA Database | metal ion binding | |
GO:0051539 | IEA | GOA Database | 4 iron, 4 sulfur cluster binding |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0005634 | IBA | GOA Database | nucleus |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
InterPro | Description |
---|---|
IPR011257 | DNA glycosylase |
IPR003265 | HhH-GPD domain |
IPR005760 | A/G-specific adenine glycosylase MutY |
IPR015797 | NUDIX hydrolase-like domain superfamily |
IPR029119 | MutY, C-terminal |
IPR000445 | Helix-hairpin-helix motif |
IPR044298 | Adenine/Thymine-DNA glycosylase |
IPR023170 | Helix-hairpin-helix, base-excision DNA repair, C-terminal |
Mapman id | Description |
---|---|
35.1 | not assigned.annotated |