Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G154475 Manihot esculenta HOM05D002640 ORTHO05D003231 1.5e-184 649.4 338 100.0
Potri.001G034300 Populus trichocarpa HOM05D002640 ORTHO05D003231 2.4e-86 323.2 265 60.8
Eucgr.K01682 Eucalyptus grandis HOM05D002640 ORTHO05D003231 9.6e-83 311.2 267 56.6
Hund19066 Selenicereus undatus HOM05D002640 ORTHO05D003231 1.6e-82 310.5 265 61.5
Nitab4.5_0000062g0270 Nicotiana tabacum HOM05D002640 ORTHO05D003231 2.1e-82 310.1 270 61.5
Ca_08696_v3 Cicer arietinum L. HOM05D002640 ORTHO05D003231 2.8e-82 309.7 267 56.6
Dinv10811 Davidia involucrata HOM05D002640 ORTHO05D003231 2.8e-82 309.7 267 61.4
Thecc.10G133700 Theobroma cacao HOM05D002640 ORTHO05D003231 2.8e-82 309.7 315 51.4
arahy.Tifrunner.gnm1.ann1.FM1LAN Arachis hypogaea HOM05D002640 ORTHO05D003231 3.6e-82 309.3 267 56.6
arahy.Tifrunner.gnm1.ann1.PY7FNU Arachis hypogaea HOM05D002640 ORTHO05D003231 3.6e-82 309.3 267 56.6
Actinidia37853 Actinidia chinensis HOM05D002640 ORTHO05D003231 6.2e-82 308.5 267 55.8
CANSAT64G1505 Cannabis sativa HOM05D002640 ORTHO05D003231 6.2e-82 308.5 267 56.2
ClCG11G010450 Citrullus lanatus HOM05D002640 ORTHO05D003231 8.1e-82 308.1 267 56.2
Cc06_g21410 Coffea canephora HOM05D002640 ORTHO05D003231 8.1e-82 308.1 269 62.8
Actinidia38202 Actinidia chinensis HOM05D002640 ORTHO05D003231 1.1e-81 307.8 267 61.4
Ah.04g150530 Amaranthus hybridus HOM05D002640 ORTHO05D003231 1.1e-81 307.8 266 56.8
COL.COLO4_10242 Corchorus olitorius HOM05D002640 ORTHO05D003231 1.1e-81 307.8 267 56.9
Glyma.03G121000 Glycine max HOM05D002640 ORTHO05D003231 1.4e-81 307.4 267 56.6
Prupe.7G019900 Prunus persica HOM05D002640 ORTHO05D003231 1.4e-81 307.4 318 51.6
Duzib114G0695 Durio zibethinus HOM05D002640 ORTHO05D003231 1.8e-81 307.0 267 56.9
Nitab4.5_0003225g0040 Nicotiana tabacum HOM05D002640 ORTHO05D003231 1.8e-81 307.0 270 60.7
RcHm_v2.0_Chr3g0494601 Rosa chinensis HOM05D002640 ORTHO05D003231 1.8e-81 307.0 267 56.9
MD00G1108000 Malus domestica HOM05D002640 ORTHO05D003231 2.4e-81 306.6 266 56.0
Duzib106G1211 Durio zibethinus HOM05D002640 ORTHO05D003231 3.1e-81 306.2 315 50.8
CSS0028254 Camellia sinensis var. sinensis HOM05D002640 ORTHO05D003231 4.0e-81 305.8 267 60.7
Glyma.19G125600 Glycine max HOM05D002640 ORTHO05D003231 4.0e-81 305.8 267 56.2
Gohir.A05G396600 Gossypium hirsutum HOM05D002640 ORTHO05D003231 4.0e-81 305.8 278 54.3
Lj1g0022797 Lotus japonicus HOM05D002640 ORTHO05D003231 4.0e-81 305.8 267 56.2
MD00G1025500 Malus domestica HOM05D002640 ORTHO05D003231 4.0e-81 305.8 317 50.8
Solyc10g081020.2 Solanum lycopersicum HOM05D002640 ORTHO05D003231 4.0e-81 305.8 270 61.9
Sopen10g031530 Solanum pennellii HOM05D002640 ORTHO05D003231 4.0e-81 305.8 270 61.9
AUR62018416 Chenopodium quinoa HOM05D002640 ORTHO05D003231 6.9e-81 305.1 265 56.2
Haze_20287 Corylus avellana HOM05D002640 ORTHO05D003231 6.9e-81 305.1 267 56.6
CsaV3_2G009910 Cucumis sativus L. HOM05D002640 ORTHO05D003231 1.2e-80 304.3 267 55.4
MELO3C008653.2 Cucumis melo HOM05D002640 ORTHO05D003231 1.5e-80 303.9 267 55.4
Phvul.001G117200 Phaseolus vulgaris HOM05D002640 ORTHO05D003231 1.5e-80 303.9 315 50.5
GSVIVG01025815001 Vitis vinifera HOM05D002640 ORTHO05D003231 1.5e-80 303.9 267 55.8
Oeu044234.2 Olea europaea HOM05D002640 ORTHO05D003231 2.0e-80 303.5 267 56.6
TAR623G0852 Trochodendron aralioides HOM05D002640 ORTHO05D003231 2.0e-80 303.5 274 56.2
vmacro08975 Vaccinium macrocarpon HOM05D002640 ORTHO05D003231 2.0e-80 303.5 267 55.4
FAN23G1939 Fragaria x ananassa HOM05D002640 ORTHO05D003231 2.6e-80 303.1 318 50.0
FAN26G3239 Fragaria x ananassa HOM05D002640 ORTHO05D003231 2.6e-80 303.1 318 50.0
Gohir.A06G172600 Gossypium hirsutum HOM05D002640 ORTHO05D003231 2.6e-80 303.1 267 55.8
Gohir.D06G181500 Gossypium hirsutum HOM05D002640 ORTHO05D003231 2.6e-80 303.1 267 55.8
Gorai.010G212900 Gossypium raimondii HOM05D002640 ORTHO05D003231 2.6e-80 303.1 267 55.8
TPR.G26612 Trifolium pratense HOM05D002640 ORTHO05D003231 2.6e-80 303.1 267 55.8
CAN.G128.94 Capsicum annuum HOM05D002640 ORTHO05D003231 3.4e-80 302.8 270 61.9
Cpa.g.sc1617.1 Carica papaya HOM05D002640 ORTHO05D003231 4.5e-80 302.4 267 57.3
Medtr7g088700 Medicago truncatula HOM05D002640 ORTHO05D003231 4.5e-80 302.4 267 55.4
PGR142G0829 Punica granatum HOM05D002640 ORTHO05D003231 4.5e-80 302.4 267 56.2
PGSC0003DMG400028197 Solanum tuberosum HOM05D002640 ORTHO05D003231 4.5e-80 302.4 270 61.5
VMungo1383G1765 Vigna mungo HOM05D002640 ORTHO05D003231 4.5e-80 302.4 267 55.8
FAN19G2288 Fragaria x ananassa HOM05D002640 ORTHO05D003231 5.8e-80 302.0 318 49.7
QL07p013828 Quercus lobata HOM05D002640 ORTHO05D003231 5.8e-80 302.0 266 55.6
FvH4_1g29220 Fragaria vesca HOM05D002640 ORTHO05D003231 7.6e-80 301.6 318 49.7
MSTRG.6300 Avicennia marina HOM05D002640 ORTHO05D003231 1.3e-79 300.8 267 60.7
Oeu022996.1 Olea europaea HOM05D002640 ORTHO05D003231 1.3e-79 300.8 267 56.9
PSO339G4261 Papaver somniferum HOM05D002640 ORTHO05D003231 1.3e-79 300.8 266 55.3
Atru.chr1.1380 Acer truncatum HOM05D002640 ORTHO05D003231 1.7e-79 300.4 316 50.3
Gohir.D10G199500 Gossypium hirsutum HOM05D002640 ORTHO05D003231 2.2e-79 300.1 267 55.1
Gorai.011G223600 Gossypium raimondii HOM05D002640 ORTHO05D003231 2.2e-79 300.1 267 55.1
FAN28G1238 Fragaria x ananassa HOM05D002640 ORTHO05D003231 2.9e-79 299.7 318 49.4
Lj2C412G3 Lonicera japonica HOM05D002640 ORTHO05D003231 2.9e-79 299.7 267 54.3
PSO384G3455 Papaver somniferum HOM05D002640 ORTHO05D003231 2.9e-79 299.7 266 54.9
Sed0027584 Sechium edule HOM05D002640 ORTHO05D003231 2.9e-79 299.7 266 54.5
Ciclev10013566m.g Citrus clementina HOM05D002640 ORTHO05D003231 4.9e-79 298.9 315 49.8
Manes.08G162401 Manihot esculenta HOM05D002640 ORTHO05D003231 4.9e-79 298.9 316 49.7
QL07p013799 Quercus lobata HOM05D002640 ORTHO05D003231 6.4e-79 298.5 265 53.6
Migut.J01553 Erythranthe guttata HOM05D002640 ORTHO05D003231 8.4e-79 298.1 267 54.7
Rhsim04G0118000 Rhododendron simsii HOM05D002640 ORTHO05D003231 2.4e-78 296.6 267 59.6
DCAR_020604 Daucus carota HOM05D002640 ORTHO05D003231 3.2e-78 296.2 268 53.4
GSVIVG01012381001 Vitis vinifera HOM05D002640 ORTHO05D003231 5.4e-78 295.4 265 52.5
SalBow6G2030 Salvia bowleyana HOM05D002640 ORTHO05D003231 7.1e-78 295.0 267 58.8
CiPaw.09G052100 Carya illinoinensis HOM05D002640 ORTHO05D003231 9.3e-78 294.7 267 54.7
Gohir.A10G191700 Gossypium hirsutum HOM05D002640 ORTHO05D003231 9.3e-78 294.7 330 47.6
GSVIVG01012377001 Vitis vinifera HOM05D002640 ORTHO05D003231 1.6e-77 293.9 265 52.5
Medtr7g087475 Medicago truncatula HOM05D002640 ORTHO05D003231 2.1e-77 293.5 267 54.3
Nn7g37023 Nelumbo nucifera HOM05D002640 ORTHO05D003231 2.1e-77 293.5 266 57.9
THA.LOC104805690 Tarenaya hassleriana HOM05D002640 ORTHO05D003231 2.1e-77 293.5 267 54.7
Lalb_Chr14g0365421 Lupinus albus HOM05D002640 ORTHO05D003231 7.9e-77 291.6 267 54.3
SGA_v2.0_scaffold66G22308 Striga asiatica HOM05D002640 ORTHO05D003231 1.0e-76 291.2 267 53.6
TWI77G0284 Tripterygium wilfordii HOM05D002640 ORTHO05D003231 1.0e-76 291.2 267 53.6
Aa31LG2G2460 Aethionema arabicum HOM05D002640 ORTHO05D003231 1.3e-76 290.8 267 52.4
Lalb_Chr24g0400581 Lupinus albus HOM05D002640 ORTHO05D003231 1.3e-76 290.8 267 52.8
QL04p022175 Quercus lobata HOM05D002640 ORTHO05D003231 1.3e-76 290.8 265 52.5
HanXRQChr06g0177131 Helianthus annuus HOM05D002640 ORTHO05D003231 2.3e-76 290.0 311 50.8
Sp5g20200 Schrenkiella parvula HOM05D002640 ORTHO05D003231 3.9e-76 289.3 267 52.4
Thhalv10018001m.g Eutrema salsugineum HOM05D002640 ORTHO05D003231 6.7e-76 288.5 267 52.8
TWI53G2001 Tripterygium wilfordii HOM05D002640 ORTHO05D003231 8.7e-76 288.1 265 54.0
Potri.016G029200 Populus trichocarpa HOM05D002640 ORTHO05D003231 1.1e-75 287.7 267 53.9
C06p39050 Brassica napus HOM05D002640 ORTHO05D003231 1.5e-75 287.3 267 52.4
BolC6t38997H Brassica oleracea HOM05D002640 ORTHO05D003231 1.5e-75 287.3 267 52.4
BraA07t30909Z Brassica rapa HOM05D002640 ORTHO05D003231 2.5e-75 286.6 267 52.4
DCAR_013529 Daucus carota HOM05D002640 ORTHO05D003231 2.5e-75 286.6 266 52.6
A07p32820 Brassica napus HOM05D002640 ORTHO05D003231 9.6e-75 284.6 267 52.1
CARHR057100 Cardamine hirsuta HOM05D002640 ORTHO05D003231 1.3e-74 284.3 267 51.3
ECA236G4010 Erigeron canadensis HOM05D002640 ORTHO05D003231 2.8e-74 283.1 266 53.4
Lsat_1_v5_gn_8_83860 Lactuca sativa HOM05D002640 ORTHO05D003231 3.7e-74 282.7 267 54.7
SHI11341 Sapria himalayana HOM05D002640 ORTHO05D003231 6.2e-74 282.0 289 49.5
Carub.0002s1117 Capsella rubella HOM05D002640 ORTHO05D003231 8.1e-74 281.6 267 51.3
Peaxi162Scf00601g00007 Petunia axillaris HOM05D002640 ORTHO05D003231 1.1e-73 281.2 265 55.5
Lsat_1_v5_gn_9_32200 Lactuca sativa HOM05D002640 ORTHO05D003231 1.4e-73 280.8 321 47.0
BcaB05g24114 Brassica carinata HOM05D002640 ORTHO05D003231 1.8e-73 280.4 267 50.9
CDE08G1380 Ceratophyllum demersum HOM05D002640 ORTHO05D003231 2.4e-73 280.0 266 53.0
Sabra06G0021300 Salix brachista HOM05D002640 ORTHO05D003231 2.4e-73 280.0 316 51.6
BcaC03g14705 Brassica carinata HOM05D002640 ORTHO05D003231 3.1e-73 279.6 267 51.3
C02p21400 Brassica napus HOM05D002640 ORTHO05D003231 3.1e-73 279.6 267 51.3
BolC2t08277H Brassica oleracea HOM05D002640 ORTHO05D003231 3.1e-73 279.6 267 51.3
EL10Ac3g07304 Beta vulgaris HOM05D002640 ORTHO05D003231 5.3e-73 278.9 324 45.7
Potri.006G031900 Populus trichocarpa HOM05D002640 ORTHO05D003231 5.3e-73 278.9 316 51.3
BolC2t07860H Brassica oleracea HOM05D002640 ORTHO05D003231 6.9e-73 278.5 267 50.9
AL2G22130 Arabidopsis lyrata HOM05D002640 ORTHO05D003231 9.0e-73 278.1 267 51.3
MBI13_g02373_MAGBIO Magnolia biondii HOM05D002640 ORTHO05D003231 1.2e-72 277.7 265 53.2
AT1G65440 Arabidopsis thaliana HOM05D002640 ORTHO05D003231 2.0e-72 276.9 267 50.9
A02p13220 Brassica napus HOM05D002640 ORTHO05D003231 2.6e-72 276.6 267 50.6
BraA02t06378Z Brassica rapa HOM05D002640 ORTHO05D003231 2.6e-72 276.6 267 50.6
ECA247G4078 Erigeron canadensis HOM05D002640 ORTHO05D003231 2.6e-72 276.6 267 52.4
Sabra16G0033200 Salix brachista HOM05D002640 ORTHO05D003231 2.6e-72 276.6 266 53.4
unitig_21.g20682 Utricularia gibba HOM05D002640 ORTHO05D003231 4.5e-72 275.8 267 50.2
HanXRQChr10g0298481 Helianthus annuus HOM05D002640 ORTHO05D003231 5.8e-72 275.4 268 53.4
Glyma.06G312200 Glycine max HOM05D002640 ORTHO05D003231 7.6e-72 275.0 264 50.0
Lalb_Chr15g0079261 Lupinus albus HOM05D002640 ORTHO05D003231 1.7e-71 273.9 264 52.3
VMungo1080G1740 Vigna mungo HOM05D002640 ORTHO05D003231 3.8e-71 272.7 264 50.4
MBI11_g01739_MAGBIO Magnolia biondii HOM05D002640 ORTHO05D003231 1.9e-70 270.4 264 51.1
Phvul.005G013600 Phaseolus vulgaris HOM05D002640 ORTHO05D003231 9.3e-70 268.1 264 49.6
Prupe.8G211800 Prunus persica HOM05D002640 ORTHO05D003231 9.3e-70 268.1 265 51.7
Aqoxy1G00051 Aquilegia oxysepala HOM05D002640 ORTHO05D003231 1.2e-69 267.7 266 51.9
Migut.J01544 Erythranthe guttata HOM05D002640 ORTHO05D003231 2.1e-69 266.9 268 51.1
Ca_12390_v3 Cicer arietinum L. HOM05D002640 ORTHO05D003231 7.9e-69 265.0 264 49.2
ATR0782G064 Amborella trichopoda HOM05D002640 ORTHO05D003231 1.8e-68 263.8 267 51.3
Lj3g0013532 Lotus japonicus HOM05D002640 ORTHO05D003231 3.9e-68 262.7 265 50.6
AUR62041298 Chenopodium quinoa HOM05D002640 ORTHO05D003231 2.5e-67 260.0 284 48.2
HanXRQChr04g0125591 Helianthus annuus HOM05D002640 ORTHO05D003231 2.5e-67 260.0 312 45.5
Psat5g224720 Pisum sativum HOM05D002640 ORTHO05D003231 2.5e-67 260.0 264 48.9
TPR.G30407 Trifolium pratense HOM05D002640 ORTHO05D003231 4.3e-67 259.2 264 47.7
Lj9C650G10 Lonicera japonica HOM05D002640 ORTHO05D003231 9.6e-67 258.1 266 48.1
QL04p022161 Quercus lobata HOM05D002640 ORTHO05D003231 2.1e-66 256.9 264 46.2
COL.COLO4_04288 Corchorus olitorius HOM05D002640 ORTHO05D003231 2.8e-66 256.5 272 50.0
MD10G1173400 Malus domestica HOM05D002640 ORTHO05D003231 1.2e-64 251.1 267 48.3
BcaNung05532 Brassica carinata HOM05D002640 ORTHO05D003231 3.8e-63 246.1 244 51.2
Zm00001eb291590 Zea mays HOM05D002640 ORTHO05D003231 8.4e-63 245.0 266 48.1
AT1G63210 Arabidopsis thaliana HOM05D002640 ORTHO05D003231 1.4e-62 244.2 265 47.5
Carub.0002s0163 Capsella rubella HOM05D002640 ORTHO05D003231 1.4e-62 244.2 266 48.5
Lj1C1081G2 Lonicera japonica HOM05D002640 ORTHO05D003231 2.5e-62 243.4 367 37.9
AL2G12170 Arabidopsis lyrata HOM05D002640 ORTHO05D003231 3.2e-62 243.0 265 46.8
SEGI_20723 Sequoiadendron giganteum HOM05D002640 ORTHO05D003231 2.7e-61 240.0 268 46.6
HPP92_011291 Vanilla planifolia HOM05D002640 ORTHO05D003231 7.9e-61 238.4 266 46.6
SEGI_00617 Sequoiadendron giganteum HOM05D002640 ORTHO05D003231 4.3e-59 232.6 275 43.6
SEGI_15393 Sequoiadendron giganteum HOM05D002640 ORTHO05D003231 7.4e-59 231.9 266 44.7
Sp2g01330 Schrenkiella parvula HOM05D002640 ORTHO05D003231 3.4e-56 223.0 265 45.3
C02p17460 Brassica napus HOM05D002640 ORTHO05D003231 1.6e-53 214.2 180 57.2
COL.COLO4_25705 Corchorus olitorius HOM05D002640 ORTHO05D003231 1.6e-53 214.2 264 42.8
Mapoly0025s0106 Marchantia polymorpha HOM05D002640 ORTHO05D003231 5.1e-52 209.1 273 41.0
Carub.0001s4195 Capsella rubella HOM05D002640 ORTHO05D003231 5.7e-51 205.7 266 42.9
Psat0s699g0040 Pisum sativum HOM05D002640 ORTHO05D003231 1.3e-50 204.5 208 48.6
CBR_g879 Chara braunii HOM05D002640 ORTHO05D003231 1.5e-48 197.6 278 39.6
CDE09G0935 Ceratophyllum demersum HOM05D002640 ORTHO05D003231 4.5e-48 196.1 143 62.9
Pp3c5_23930 Physcomitrium patens HOM05D002640 ORTHO05D003231 1.3e-47 194.5 265 37.7
SMO364G0195 Selaginella moellendorffii HOM05D002640 ORTHO05D003231 1.3e-47 194.5 266 39.8
AagrBONN_evm.TU.Sc2ySwM_228.4939 Anthoceros agrestis HOM05D002640 ORTHO05D003231 2.9e-47 193.4 270 38.1
Thhalv10012314m.g Eutrema salsugineum HOM05D002640 ORTHO05D003231 2.5e-46 190.3 245 42.0
Pp3c5_24480 Physcomitrium patens HOM05D002640 ORTHO05D003231 1.4e-44 184.5 265 37.0
HPP92_011270 Vanilla planifolia HOM05D002640 ORTHO05D003231 3.3e-43 179.9 266 39.5
CBR_g876 Chara braunii HOM05D002640 ORTHO05D003231 6.3e-42 175.6 285 34.7
Os05g0494900 Oryza sativa ssp. japonica HOM05D002640 ORTHO05D003231 1.4e-36 157.9 116 63.8
Sc19g0007910 Simmondsia chinensis HOM05D002640 ORTHO05D003231 5.5e-30 136.0 137 49.6
Thecc.10G136200 Theobroma cacao HOM05D002640 ORTHO05D003231 7.0e-25 119.0 82 68.3
MCO05G283 Micromonas commoda HOM05D002640 ORTHO05D003231 6.5e-23 112.5 288 27.8
PRCOL_00004004 Prasinoderma coloniale HOM05D002640 ORTHO05D003231 1.2e-21 108.2 277 30.7
ECA236G0767 Erigeron canadensis HOM05D002640 ORTHO05D003231 9.8e-19 98.6 83 60.2
SEGI_17703 Sequoiadendron giganteum HOM05D002640 ORTHO05D003231 5.4e-17 92.8 206 29.1
Dinv13151 Davidia involucrata HOM05D002640 ORTHO05D003231 3.8e-15 86.7 69 56.5
Dinv13155 Davidia involucrata HOM05D002640 ORTHO05D003231 3.8e-15 86.7 69 56.5
Psat3g019400 Pisum sativum HOM05D002640 ORTHO05D003231 3.3e-14 83.6 131 39.7
GSVIVG01012364001 Vitis vinifera HOM05D002640 ORTHO05D003231 1.2e-11 75.1 44 68.2
RcHm_v2.0_Chr2g0087901 Rosa chinensis HOM05D002640 ORTHO05D003231 1.5e-06 58.2 69 39.1
arahy.Tifrunner.gnm1.ann1.9YYL5D Arachis hypogaea HOM05D002640 ORTHO05D003231 1.9e-06 57.8 57 52.6
Cre09.g403182 Chlamydomonas reinhardtii HOM05D002640 ORTHO05D003231 1.9e-06 57.8 206 28.2
RcHm_v2.0_Chr2g0087921 Rosa chinensis HOM05D002640 ORTHO05D003231 4.3e-06 56.6 69 39.1
FvH4_1g02810 Fragaria vesca HOM05D002640 ORTHO05D003231 7.3e-06 55.8 64 42.2
FAN19G3161 Fragaria x ananassa HOM05D002640 ORTHO05D003231 7.3e-06 55.8 64 42.2


User provided reference genes

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