Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1121000 Malus domestica HOM05D004484 ORTHO05D005370 0.0e+00 1369.8 685 100.0
Prupe.2G145600 Prunus persica HOM05D004484 ORTHO05D005370 0.0e+00 1217.6 688 88.1
FvH4_7g11900 Fragaria vesca HOM05D004484 ORTHO05D005370 0.0e+00 1129.0 688 80.4
FAN01G0628 Fragaria x ananassa HOM05D004484 ORTHO05D005370 0.0e+00 1119.8 688 79.7
FAN10G1483 Fragaria x ananassa HOM05D004484 ORTHO05D005370 0.0e+00 1119.8 688 80.1
FAN06G1787 Fragaria x ananassa HOM05D004484 ORTHO05D005370 0.0e+00 1117.8 688 79.9
FAN06G3319 Fragaria x ananassa HOM05D004484 ORTHO05D005370 0.0e+00 1115.9 688 79.7
FAN10G2369 Fragaria x ananassa HOM05D004484 ORTHO05D005370 0.0e+00 1115.1 688 79.8
QL08p052472 Quercus lobata HOM05D004484 ORTHO05D005370 1.4e-311 1072.4 687 77.7
Dinv32377 Davidia involucrata HOM05D004484 ORTHO05D005370 2.8e-307 1058.1 691 75.7
CiPaw.01G262000 Carya illinoinensis HOM05D004484 ORTHO05D005370 3.7e-307 1057.7 689 76.2
Potri.014G069700 Populus trichocarpa HOM05D004484 ORTHO05D005370 1.9e-300 1035.4 684 74.7
FAN03G1897 Fragaria x ananassa HOM05D004484 ORTHO05D005370 8.2e-299 1030.0 689 74.9
TWI23G0227 Tripterygium wilfordii HOM05D004484 ORTHO05D005370 8.2e-299 1030.0 687 74.5
Haze_16815 Corylus avellana HOM05D004484 ORTHO05D005370 1.1e-298 1029.6 746 70.2
Hma1.2p1_0086F.1_g044870 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 2.4e-298 1028.5 686 74.6
Sed0020955 Sechium edule HOM05D004484 ORTHO05D005370 4.1e-298 1027.7 693 73.9
Ca_19886_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 2.6e-297 1025.0 685 74.3
CANSAT56G4533 Cannabis sativa HOM05D004484 ORTHO05D005370 8.5e-296 1020.0 692 74.0
Nn1g01233 Nelumbo nucifera HOM05D004484 ORTHO05D005370 1.9e-295 1018.8 684 73.8
GSVIVG01027610001 Vitis vinifera HOM05D004484 ORTHO05D005370 7.2e-295 1016.9 673 75.3
Atru.chr5.309 Acer truncatum HOM05D004484 ORTHO05D005370 2.1e-294 1015.4 686 72.9
TAR629G2468 Trochodendron aralioides HOM05D004484 ORTHO05D005370 6.1e-294 1013.8 670 74.9
CANSAT56G1200 Cannabis sativa HOM05D004484 ORTHO05D005370 2.3e-293 1011.9 692 73.4
Lj7A528T57 Lonicera japonica HOM05D004484 ORTHO05D005370 1.1e-292 1009.6 699 73.2
PSO478G5008 Papaver somniferum HOM05D004484 ORTHO05D005370 3.3e-292 1008.1 689 71.8
Medtr4g023560 Medicago truncatula HOM05D004484 ORTHO05D005370 5.7e-292 1007.3 686 72.9
Oeu055487.1 Olea europaea HOM05D004484 ORTHO05D005370 5.7e-292 1007.3 688 73.1
Eucgr.E01418 Eucalyptus grandis HOM05D004484 ORTHO05D005370 3.7e-291 1004.6 688 71.5
Manes.01G265900 Manihot esculenta HOM05D004484 ORTHO05D005370 8.2e-291 1003.4 692 71.7
Aqoxy5G00403 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 1.8e-290 1002.3 690 72.6
ClCG05G002220 Citrullus lanatus HOM05D004484 ORTHO05D005370 1.8e-290 1002.3 689 73.4
Lj3g0013484 Lotus japonicus HOM05D004484 ORTHO05D005370 6.9e-290 1000.3 682 73.2
Lalb_Chr13g0291731 Lupinus albus HOM05D004484 ORTHO05D005370 4.5e-289 997.7 689 72.4
Ca_27059_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 7.7e-289 996.9 685 72.8
Nitab4.5_0000457g0330 Nicotiana tabacum HOM05D004484 ORTHO05D005370 1.7e-288 995.7 688 71.5
Thecc.01G376200 Theobroma cacao HOM05D004484 ORTHO05D005370 5.0e-288 994.2 688 70.5
CsaV3_3G009680 Cucumis sativus L. HOM05D004484 ORTHO05D005370 2.7e-286 988.4 689 71.7
Psat7g233440 Pisum sativum HOM05D004484 ORTHO05D005370 8.0e-286 986.9 684 70.8
Cc02_g36700 Coffea canephora HOM05D004484 ORTHO05D005370 5.2e-285 984.2 687 71.9
Sc02g0002590 Simmondsia chinensis HOM05D004484 ORTHO05D005370 3.3e-284 981.5 672 71.3
Peaxi162Scf00021g01723 Petunia axillaris HOM05D004484 ORTHO05D005370 7.4e-284 980.3 687 70.6
HanXRQChr16g0520161 Helianthus annuus HOM05D004484 ORTHO05D005370 3.7e-283 978.0 679 71.0
ECA234G1700 Erigeron canadensis HOM05D004484 ORTHO05D005370 4.8e-283 977.6 685 71.2
Glyma.05G125700 Glycine max HOM05D004484 ORTHO05D005370 6.3e-283 977.2 689 71.4
Ciclev10019016m.g Citrus clementina HOM05D004484 ORTHO05D005370 4.1e-282 974.5 690 70.6
MSTRG.20748 Avicennia marina HOM05D004484 ORTHO05D005370 7.0e-282 973.8 688 70.3
Sabra14G0049400 Salix brachista HOM05D004484 ORTHO05D005370 2.0e-281 972.2 698 69.9
arahy.Tifrunner.gnm1.ann1.Q9SWB6 Arachis hypogaea HOM05D004484 ORTHO05D005370 3.5e-281 971.5 691 71.8
MBI12_g10758_MAGBIO Magnolia biondii HOM05D004484 ORTHO05D005370 7.7e-281 970.3 717 69.2
arahy.Tifrunner.gnm1.ann1.6K85L9 Arachis hypogaea HOM05D004484 ORTHO05D005370 1.3e-280 969.5 691 71.9
arahy.Tifrunner.gnm1.ann1.HW1IVJ Arachis hypogaea HOM05D004484 ORTHO05D005370 1.3e-280 969.5 691 71.9
CSS0036976 Camellia sinensis var. sinensis HOM05D004484 ORTHO05D005370 2.2e-280 968.8 686 71.9
arahy.Tifrunner.gnm1.ann1.V1M046 Arachis hypogaea HOM05D004484 ORTHO05D005370 2.9e-280 968.4 689 71.8
DCAR_015907 Daucus carota HOM05D004484 ORTHO05D005370 8.5e-280 966.8 689 69.8
PGSC0003DMG400012761 Solanum tuberosum HOM05D004484 ORTHO05D005370 3.2e-279 964.9 687 69.7
CAN.G388.13 Capsicum annuum HOM05D004484 ORTHO05D005370 4.2e-279 964.5 683 69.1
SGA_v2.0_scaffold153G37012 Striga asiatica HOM05D004484 ORTHO05D005370 7.2e-279 963.8 690 69.9
Phvul.002G205800 Phaseolus vulgaris HOM05D004484 ORTHO05D005370 1.6e-278 962.6 683 70.0
Migut.B01635 Erythranthe guttata HOM05D004484 ORTHO05D005370 3.3e-276 954.9 689 69.1
Cpa.g.sc18.115 Carica papaya HOM05D004484 ORTHO05D005370 2.2e-275 952.2 689 68.7
PGR042G0667 Punica granatum HOM05D004484 ORTHO05D005370 2.2e-275 952.2 691 68.9
Solyc01g091350.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 2.2e-275 952.2 687 68.3
MELO3C006188.2 Cucumis melo HOM05D004484 ORTHO05D005370 2.8e-275 951.8 654 72.0
Sopen01g037090 Solanum pennellii HOM05D004484 ORTHO05D005370 8.2e-275 950.3 687 68.1
VMungo0251G1206 Vigna mungo HOM05D004484 ORTHO05D005370 1.1e-274 949.9 676 68.6
Nitab4.5_0005372g0070 Nicotiana tabacum HOM05D004484 ORTHO05D005370 3.1e-274 948.3 698 68.5
Lalb_Chr12g0208261 Lupinus albus HOM05D004484 ORTHO05D005370 5.3e-274 947.6 689 68.5
vmacro13399 Vaccinium macrocarpon HOM05D004484 ORTHO05D005370 1.2e-273 946.4 690 69.4
Lsat_1_v5_gn_4_43240 Lactuca sativa HOM05D004484 ORTHO05D005370 4.5e-273 944.5 685 69.3
Gorai.007G091100 Gossypium raimondii HOM05D004484 ORTHO05D005370 6.5e-272 940.6 684 68.3
Gohir.A11G080700 Gossypium hirsutum HOM05D004484 ORTHO05D005370 9.4e-271 936.8 684 68.0
Gohir.D11G085300 Gossypium hirsutum HOM05D004484 ORTHO05D005370 1.6e-270 936.0 684 68.1
EL10Ac1g00900 Beta vulgaris HOM05D004484 ORTHO05D005370 1.8e-269 932.6 710 65.2
AUR62004221 Chenopodium quinoa HOM05D004484 ORTHO05D005370 1.3e-267 926.4 721 65.7
Aqoxy3G02138 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 2.8e-262 908.7 690 66.5
TPR.G9845 Trifolium pratense HOM05D004484 ORTHO05D005370 8.3e-259 897.1 715 65.3
Cfa001721 Carpinus fangiana HOM05D004484 ORTHO05D005370 2.5e-255 885.6 584 75.7
BcaB04g17469 Brassica carinata HOM05D004484 ORTHO05D005370 9.5e-255 883.6 683 63.0
GSVIVG01027609001 Vitis vinifera HOM05D004484 ORTHO05D005370 9.5e-255 883.6 659 68.0
Ah.13g073490 Amaranthus hybridus HOM05D004484 ORTHO05D005370 4.7e-254 881.3 715 63.1
THA.LOC104817247 Tarenaya hassleriana HOM05D004484 ORTHO05D005370 3.4e-252 875.2 678 64.2
Carub.0001s3716 Capsella rubella HOM05D004484 ORTHO05D005370 2.9e-251 872.1 681 62.4
AT1G48050 Arabidopsis thaliana HOM05D004484 ORTHO05D005370 1.4e-250 869.8 683 61.9
BcaC07g37180 Brassica carinata HOM05D004484 ORTHO05D005370 1.4e-250 869.8 682 62.8
Sp1g35020 Schrenkiella parvula HOM05D004484 ORTHO05D005370 1.8e-250 869.4 670 62.8
C08p05620 Brassica napus HOM05D004484 ORTHO05D005370 1.6e-249 866.3 678 62.7
BolC8t47375H Brassica oleracea HOM05D004484 ORTHO05D005370 1.6e-249 866.3 678 62.7
SHI13523 Sapria himalayana HOM05D004484 ORTHO05D005370 1.6e-249 866.3 653 66.8
BraSC267t45947Z Brassica rapa HOM05D004484 ORTHO05D005370 2.0e-249 865.9 678 62.2
CARHR037700 Cardamine hirsuta HOM05D004484 ORTHO05D005370 8.0e-246 854.0 682 61.4
AL1G54570 Arabidopsis lyrata HOM05D004484 ORTHO05D005370 8.9e-245 850.5 667 62.7
A08p05330 Brassica napus HOM05D004484 ORTHO05D005370 6.6e-240 834.3 658 62.0
AUR62013627 Chenopodium quinoa HOM05D004484 ORTHO05D005370 1.1e-237 827.0 705 61.6
Hund27347 Selenicereus undatus HOM05D004484 ORTHO05D005370 1.4e-229 800.0 606 67.5
HPP92_027818 Vanilla planifolia HOM05D004484 ORTHO05D005370 6.6e-224 781.2 684 59.8
Zm00001eb064930 Zea mays HOM05D004484 ORTHO05D005370 4.7e-222 775.0 664 59.9
COL.COLO4_07018 Corchorus olitorius HOM05D004484 ORTHO05D005370 4.0e-221 771.9 547 68.9
arahy.Tifrunner.gnm1.ann1.03ZR4A Arachis hypogaea HOM05D004484 ORTHO05D005370 2.4e-213 746.1 712 56.9
arahy.Tifrunner.gnm1.ann1.5WGS6V Arachis hypogaea HOM05D004484 ORTHO05D005370 1.3e-211 740.3 656 60.1
Potri.002G148200 Populus trichocarpa HOM05D004484 ORTHO05D005370 1.8e-208 729.9 485 74.2
COL.COLO4_12548 Corchorus olitorius HOM05D004484 ORTHO05D005370 1.8e-205 719.9 710 54.2
arahy.Tifrunner.gnm1.ann1.5492A7 Arachis hypogaea HOM05D004484 ORTHO05D005370 2.4e-202 709.5 685 57.4
unitig_749.g13780 Utricularia gibba HOM05D004484 ORTHO05D005370 2.5e-199 699.5 565 64.1
Hma1.2p1_0086F.1_g044880 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 2.8e-198 696.0 450 76.4
arahy.Tifrunner.gnm1.ann1.T9R8PC Arachis hypogaea HOM05D004484 ORTHO05D005370 1.1e-197 694.1 686 56.0
Thhalv10011351m.g Eutrema salsugineum HOM05D004484 ORTHO05D005370 9.3e-194 681.0 643 56.0
RcHm_v2.0_Chr1g0350581 Rosa chinensis HOM05D004484 ORTHO05D005370 1.2e-188 664.1 381 85.0
CDE04G3156 Ceratophyllum demersum HOM05D004484 ORTHO05D005370 2.2e-182 643.3 675 51.3
Lj9C569T11 Lonicera japonica HOM05D004484 ORTHO05D005370 2.8e-182 642.9 466 68.5
Pp3c22_11100 Physcomitrium patens HOM05D004484 ORTHO05D005370 2.8e-182 642.9 696 48.7
Aa31LG10G5650 Aethionema arabicum HOM05D004484 ORTHO05D005370 8.2e-182 641.3 579 57.9
ATR0049G077 Amborella trichopoda HOM05D004484 ORTHO05D005370 9.1e-181 637.9 458 67.0
SMO367G0514 Selaginella moellendorffii HOM05D004484 ORTHO05D005370 2.5e-178 629.8 691 48.3
Mapoly0129s0012 Marchantia polymorpha HOM05D004484 ORTHO05D005370 1.2e-172 610.9 632 48.6
PGR119G1536 Punica granatum HOM05D004484 ORTHO05D005370 1.2e-164 584.3 516 57.9
AagrBONN_evm.TU.Sc2ySwM_368.3373 Anthoceros agrestis HOM05D004484 ORTHO05D005370 7.5e-151 538.5 688 42.6
RcHm_v2.0_Chr1g0350571 Rosa chinensis HOM05D004484 ORTHO05D005370 1.1e-128 464.9 296 78.0
CBR_g30081 Chara braunii HOM05D004484 ORTHO05D005370 3.9e-115 419.9 480 44.6
SHI38996 Sapria himalayana HOM05D004484 ORTHO05D005370 1.8e-91 341.3 204 79.4
SHI38095 Sapria himalayana HOM05D004484 ORTHO05D005370 1.1e-82 312.0 190 78.9
Hma1.2p1_0701F.1_g205850 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 2.5e-82 310.8 278 62.2
SHI38094 Sapria himalayana HOM05D004484 ORTHO05D005370 1.3e-65 255.4 211 62.1
arahy.Tifrunner.gnm1.ann1.47H85H Arachis hypogaea HOM05D004484 ORTHO05D005370 2.5e-61 241.1 333 44.4
Glyma.06G243967 Glycine max HOM05D004484 ORTHO05D005370 1.4e-56 225.3 143 69.9
Glyma.01G142851 Glycine max HOM05D004484 ORTHO05D005370 2.2e-54 218.0 164 66.5
SEGI_20047 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 2.7e-52 211.1 221 50.2
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 3.2e-45 187.6 255 42.0
Glyma.17G005802 Glycine max HOM05D004484 ORTHO05D005370 2.6e-42 177.9 192 53.6
MCO15G158 Micromonas commoda HOM05D004484 ORTHO05D005370 2.6e-42 177.9 522 27.8
Hma1.2p1_0170F.1_g075250 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 6.3e-41 173.3 202 51.0
QL08p052505 Quercus lobata HOM05D004484 ORTHO05D005370 1.6e-39 168.7 155 60.6
SEGI_29754 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 2.9e-38 164.5 116 69.8
SHI38995 Sapria himalayana HOM05D004484 ORTHO05D005370 5.0e-38 163.7 126 65.1
CAN.G594.7 Capsicum annuum HOM05D004484 ORTHO05D005370 5.5e-37 160.2 105 75.2
TPR.G22633 Trifolium pratense HOM05D004484 ORTHO05D005370 1.0e-35 156.0 92 79.3
SGA_v2.0_scaffold65G22170 Striga asiatica HOM05D004484 ORTHO05D005370 2.8e-33 147.9 201 42.3
CAN.G205.22 Capsicum annuum HOM05D004484 ORTHO05D005370 1.1e-32 146.0 96 70.8
Os03g0856200 Oryza sativa ssp. japonica HOM05D004484 ORTHO05D005370 3.6e-28 131.0 97 62.9
Aa31LG10G5660 Aethionema arabicum HOM05D004484 ORTHO05D005370 1.5e-26 125.6 94 60.6
Eucgr.I00725 Eucalyptus grandis HOM05D004484 ORTHO05D005370 4.4e-26 124.0 82 73.2
Solyc01g091430.2 Solanum lycopersicum HOM05D004484 ORTHO05D005370 8.3e-25 119.8 100 61.0
CAN.G388.14 Capsicum annuum HOM05D004484 ORTHO05D005370 4.1e-24 117.5 69 75.4
CAN.G279.6 Capsicum annuum HOM05D004484 ORTHO05D005370 2.9e-22 111.3 72 75.0
SGA_v2.0_scaffold10G05342 Striga asiatica HOM05D004484 ORTHO05D005370 1.8e-19 102.1 191 36.6
SGA_v2.0_scaffold172G39032 Striga asiatica HOM05D004484 ORTHO05D005370 6.8e-19 100.1 168 38.7
Glyma.06G243934 Glycine max HOM05D004484 ORTHO05D005370 1.5e-18 99.0 81 56.8
Glyma.06G244302 Glycine max HOM05D004484 ORTHO05D005370 4.4e-18 97.4 81 55.6
SGA_v2.0_scaffold29G12247 Striga asiatica HOM05D004484 ORTHO05D005370 1.7e-17 95.5 189 37.6
PRCOL_00002704 Prasinoderma coloniale HOM05D004484 ORTHO05D005370 1.9e-16 92.0 261 30.7
TPR.G9848 Trifolium pratense HOM05D000164 ORTHO05D000096 3.2e-16 91.3 55 78.2
Eucgr.E01421 Eucalyptus grandis HOM05D004484 ORTHO05D005370 7.0e-16 90.1 66 66.7
Solyc01g091440.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 9.2e-16 89.7 133 43.6
Eucgr.L02075 Eucalyptus grandis HOM05D004484 ORTHO05D005370 1.7e-14 85.5 66 65.2
CAN.G321.48 Capsicum annuum HOM05D001267 ORTHO05D002376 6.8e-11 73.6 62 61.3
arahy.Tifrunner.gnm1.ann1.0F06NC Arachis hypogaea HOM05D004484 ORTHO05D005370 5.8e-10 70.5 48 64.6
Cre10.g423800 Chlamydomonas reinhardtii HOM05D004484 ORTHO05D005370 4.1e-08 64.3 543 20.6
Hma1.2p1_1470F.1_g285600 Hydrangea macrophylla HOM05D000467 ORTHO05D011800 1.6e-07 62.4 46 67.4
Oeu032522.1 Olea europaea HOM05D004484 ORTHO05D005370 4.6e-07 60.8 63 50.8


User provided reference genes

Program Settings