Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C1036G7 Lonicera japonica HOM05D003203 ORTHO05D003526 0.0e+00 1229.9 637 100.0
Dinv32789 Davidia involucrata HOM05D003203 ORTHO05D003526 1.6e-243 846.3 609 71.6
Oeu005910.3 Olea europaea HOM05D003203 ORTHO05D003526 3.5e-227 792.0 589 69.6
CSS0047004 Camellia sinensis var. sinensis HOM05D003203 ORTHO05D003526 1.5e-225 786.6 618 67.8
Lj1C185T11 Lonicera japonica HOM05D003203 ORTHO05D003526 3.1e-223 778.9 627 65.4
Lj1A185G36 Lonicera japonica HOM05D003203 ORTHO05D003526 1.2e-222 776.9 618 65.7
Ciclev10027702m.g Citrus clementina HOM05D003203 ORTHO05D003526 7.5e-222 774.2 609 66.7
TAR633G1300 Trochodendron aralioides HOM05D003203 ORTHO05D003526 3.9e-218 761.9 610 67.0
TAR636G0568 Trochodendron aralioides HOM05D003203 ORTHO05D003526 1.5e-217 760.0 608 67.3
Manes.11G141000 Manihot esculenta HOM05D003203 ORTHO05D003526 4.3e-217 758.4 612 65.4
TWI31G0332 Tripterygium wilfordii HOM05D003203 ORTHO05D003526 1.6e-216 756.5 617 64.5
Cpa.g.sc139.65 Carica papaya HOM05D003203 ORTHO05D003526 8.1e-216 754.2 618 64.7
CiPaw.13G106900 Carya illinoinensis HOM05D003203 ORTHO05D003526 1.8e-215 753.1 610 65.1
CANSAT54G1869 Cannabis sativa HOM05D003203 ORTHO05D003526 3.4e-214 748.8 611 64.5
DCAR_006042 Daucus carota HOM05D003203 ORTHO05D003526 1.3e-213 746.9 597 65.3
Migut.D02182 Erythranthe guttata HOM05D003203 ORTHO05D003526 2.2e-213 746.1 659 62.4
Rhsim01G0220300 Rhododendron simsii HOM05D003203 ORTHO05D003526 3.2e-212 742.3 709 57.7
FAN11G3892 Fragaria x ananassa HOM05D003203 ORTHO05D003526 5.4e-212 741.5 596 66.1
FvH4_3g33360 Fragaria vesca HOM05D003203 ORTHO05D003526 9.2e-212 740.7 596 66.1
RcHm_v2.0_Chr5g0060751 Rosa chinensis HOM05D003203 ORTHO05D003526 2.7e-211 739.2 598 65.7
Glyma.11G152960 Glycine max HOM05D003203 ORTHO05D003526 3.5e-211 738.8 602 64.1
MSTRG.21144 Avicennia marina HOM05D003203 ORTHO05D003526 6.0e-211 738.0 660 62.3
FAN16G3448 Fragaria x ananassa HOM05D003203 ORTHO05D003526 7.8e-211 737.6 596 65.4
MD11G1129800 Malus domestica HOM05D003203 ORTHO05D003526 1.7e-210 736.5 610 64.1
GSVIVG01025133001 Vitis vinifera HOM05D003203 ORTHO05D003526 1.7e-210 736.5 507 73.8
Cc01_g11550 Coffea canephora HOM05D003203 ORTHO05D003526 3.0e-210 735.7 609 65.2
PGR102G2647 Punica granatum HOM05D003203 ORTHO05D003526 1.9e-209 733.0 609 63.4
Sopen11g030070 Solanum pennellii HOM05D003203 ORTHO05D003526 1.9e-209 733.0 609 64.2
Solyc11g072430.3 Solanum lycopersicum HOM05D003203 ORTHO05D003526 2.5e-209 732.6 609 64.2
Lsat_1_v5_gn_6_26241 Lactuca sativa HOM05D003203 ORTHO05D003526 3.3e-209 732.3 642 62.3
Lj3g0012673 Lotus japonicus HOM05D003203 ORTHO05D003526 5.6e-209 731.5 609 62.9
Prupe.6G094700 Prunus persica HOM05D003203 ORTHO05D003526 5.6e-209 731.5 619 62.7
QL01p037166 Quercus lobata HOM05D003203 ORTHO05D003526 1.2e-208 730.3 508 73.4
Lj3g0020808 Lotus japonicus HOM05D003203 ORTHO05D003526 2.1e-208 729.6 612 62.7
Sc15g0001570 Simmondsia chinensis HOM05D003203 ORTHO05D003526 2.1e-208 729.6 614 63.2
Sabra16G0090500 Salix brachista HOM05D003203 ORTHO05D003526 8.1e-208 727.6 616 64.1
Eucgr.B02467 Eucalyptus grandis HOM05D003203 ORTHO05D003526 1.4e-207 726.9 611 63.0
arahy.Tifrunner.gnm1.ann1.GJ7521 Arachis hypogaea HOM05D003203 ORTHO05D003526 3.1e-207 725.7 607 66.7
Thecc.09G260300 Theobroma cacao HOM05D003203 ORTHO05D003526 1.5e-206 723.4 553 68.5
Ca_19241_v3 Cicer arietinum L. HOM05D003203 ORTHO05D003526 2.6e-206 722.6 605 62.6
Nn2g10680 Nelumbo nucifera HOM05D003203 ORTHO05D003526 4.4e-206 721.8 613 63.3
Sed0015984 Sechium edule HOM05D003203 ORTHO05D003526 4.4e-206 721.8 607 63.4
COL.COLO4_25248 Corchorus olitorius HOM05D003203 ORTHO05D003526 1.3e-205 720.3 553 67.8
SalBow3G4618 Salvia bowleyana HOM05D003203 ORTHO05D003526 1.7e-205 719.9 592 64.4
HanXRQChr13g0401461 Helianthus annuus HOM05D003203 ORTHO05D003526 2.2e-205 719.5 614 62.9
arahy.Tifrunner.gnm1.ann1.DWB64P Arachis hypogaea HOM05D003203 ORTHO05D003526 6.4e-205 718.0 620 61.9
CsaV3_1G013020 Cucumis sativus L. HOM05D003203 ORTHO05D003526 1.9e-204 716.5 603 63.8
Cfa011365 Carpinus fangiana HOM05D003203 ORTHO05D003526 4.2e-204 715.3 612 63.2
MELO3C005030.2 Cucumis melo HOM05D003203 ORTHO05D003526 4.2e-204 715.3 603 63.8
Medtr4g060795 Medicago truncatula HOM05D003203 ORTHO05D003526 1.2e-203 713.8 601 62.1
Gohir.D05G077500 Gossypium hirsutum HOM05D003203 ORTHO05D003526 1.3e-202 710.3 538 68.2
Lalb_Chr03g0027111 Lupinus albus HOM05D003203 ORTHO05D003526 2.3e-202 709.5 610 61.5
Aqoxy4G03208 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 3.9e-202 708.8 594 62.5
Phvul.011G072500 Phaseolus vulgaris HOM05D003203 ORTHO05D003526 8.7e-202 707.6 602 61.0
Psat7g223280 Pisum sativum HOM05D003203 ORTHO05D003526 1.1e-201 707.2 614 61.1
TPR.G14912 Trifolium pratense HOM05D003203 ORTHO05D003526 2.5e-201 706.1 622 61.3
CAN.G352.40 Capsicum annuum HOM05D003203 ORTHO05D003526 2.1e-200 703.0 620 61.8
VMungo1127G1096 Vigna mungo HOM05D003203 ORTHO05D003526 2.1e-200 703.0 613 60.4
ClCG03G002340 Citrullus lanatus HOM05D003203 ORTHO05D003526 2.8e-200 702.6 640 60.8
AUR62006513 Chenopodium quinoa HOM05D003203 ORTHO05D003526 1.8e-199 699.9 609 61.6
Gorai.009G078900 Gossypium raimondii HOM05D003203 ORTHO05D003526 6.9e-199 698.0 554 65.9
SHI27628 Sapria himalayana HOM05D003203 ORTHO05D003526 1.3e-194 683.7 606 61.2
Nitab4.5_0001802g0140 Nicotiana tabacum HOM05D003203 ORTHO05D003526 8.7e-194 681.0 618 59.7
THA.LOC104815752 Tarenaya hassleriana HOM05D003203 ORTHO05D003526 8.7e-194 681.0 507 68.0
AUR62025015 Chenopodium quinoa HOM05D003203 ORTHO05D003526 2.5e-193 679.5 663 56.9
ATR1159G092 Amborella trichopoda HOM05D003203 ORTHO05D003526 4.3e-193 678.7 593 61.6
ECA233G2891 Erigeron canadensis HOM05D003203 ORTHO05D003526 4.3e-193 678.7 609 61.2
HPP92_010183 Vanilla planifolia HOM05D003203 ORTHO05D003526 7.3e-193 677.9 607 61.3
Migut.N02091 Erythranthe guttata HOM05D003203 ORTHO05D003526 1.1e-191 674.1 499 69.9
RcHm_v2.0_Chr4g0389641 Rosa chinensis HOM05D003203 ORTHO05D003526 1.8e-191 673.3 500 68.2
SGA_v2.0_scaffold97G29171 Striga asiatica HOM05D003203 ORTHO05D003526 1.8e-191 673.3 630 58.6
PSO339G5999 Papaver somniferum HOM05D003203 ORTHO05D003526 1.5e-190 670.2 642 57.9
Aa31sc36G120 Aethionema arabicum HOM05D003203 ORTHO05D003526 1.7e-189 666.8 612 58.7
Nitab4.5_0002129g0110 Nicotiana tabacum HOM05D003203 ORTHO05D003526 1.7e-189 666.8 618 58.4
Haze_23916 Corylus avellana HOM05D003203 ORTHO05D003526 2.9e-189 666.0 629 59.5
Duzib168G0563 Durio zibethinus HOM05D003203 ORTHO05D003526 1.4e-188 663.7 536 65.1
EL10Ac9g22449 Beta vulgaris HOM05D003203 ORTHO05D003526 3.2e-188 662.5 557 61.9
PSO063G5461 Papaver somniferum HOM05D003203 ORTHO05D003526 3.2e-188 662.5 669 55.8
FvH4_4g02320 Fragaria vesca HOM05D003203 ORTHO05D003526 4.2e-188 662.1 495 67.9
unitig_736.g22420 Utricularia gibba HOM05D003203 ORTHO05D003526 4.2e-188 662.1 625 58.2
Thhalv10006605m.g Eutrema salsugineum HOM05D003203 ORTHO05D003526 7.1e-188 661.4 602 59.6
Carub.0011s0009 Capsella rubella HOM05D003203 ORTHO05D003526 4.6e-187 658.7 598 58.5
AT1G07910 Arabidopsis thaliana HOM05D003203 ORTHO05D003526 3.0e-186 656.0 612 58.7
FAN12G0401 Fragaria x ananassa HOM05D003203 ORTHO05D003526 5.1e-186 655.2 495 67.3
PSO765G0203 Papaver somniferum HOM05D003203 ORTHO05D003526 8.7e-186 654.4 632 57.1
BcaC07g42504 Brassica carinata HOM05D003203 ORTHO05D003526 1.1e-185 654.1 611 57.6
CDE07G0291 Ceratophyllum demersum HOM05D003203 ORTHO05D003526 4.3e-185 652.1 609 58.1
Carub.0001s0725 Capsella rubella HOM05D003203 ORTHO05D003526 1.1e-183 647.5 598 57.7
BcaC07g41968 Brassica carinata HOM05D003203 ORTHO05D003526 5.3e-183 645.2 553 60.8
C08p50260 Brassica napus HOM05D003203 ORTHO05D003526 5.3e-183 645.2 553 60.8
BolC8t52555H Brassica oleracea HOM05D003203 ORTHO05D003526 5.3e-183 645.2 553 60.8
Zm00001eb302520 Zea mays HOM05D003203 ORTHO05D003526 2.6e-182 642.9 510 63.9
Gohir.A05G074700 Gossypium hirsutum HOM05D003203 ORTHO05D003526 3.8e-181 639.0 450 71.1
A09p66110 Brassica napus HOM05D003203 ORTHO05D003526 4.2e-180 635.6 498 65.1
BraA09t41949Z Brassica rapa HOM05D003203 ORTHO05D003526 4.2e-180 635.6 498 65.3
AL6G53580 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 6.0e-179 631.7 507 63.7
BcaB02g06702 Brassica carinata HOM05D003203 ORTHO05D003526 1.8e-178 630.2 602 56.1
Atru.chr3.3693 Acer truncatum HOM05D003203 ORTHO05D003526 1.3e-176 624.0 516 64.0
SalBow6G0781 Salvia bowleyana HOM05D003203 ORTHO05D003526 1.6e-176 623.6 501 64.7
BcaC05g24708 Brassica carinata HOM05D003203 ORTHO05D003526 3.7e-176 622.5 602 56.3
A06p05020 Brassica napus HOM05D003203 ORTHO05D003526 6.2e-176 621.7 609 55.8
BraA06t23708Z Brassica rapa HOM05D003203 ORTHO05D003526 6.2e-176 621.7 609 55.8
Os07g0191700 Oryza sativa ssp. japonica HOM05D003203 ORTHO05D003526 8.2e-176 621.3 511 62.8
C05p05960 Brassica napus HOM05D003203 ORTHO05D003526 2.0e-174 616.7 603 56.6
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 2.0e-174 616.7 603 56.6
AL1G18200 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 1.6e-171 607.1 609 55.2
SEGI_33151 Sequoiadendron giganteum HOM05D003203 ORTHO05D003526 9.7e-169 597.8 568 56.0
Potri.016G083100 Populus trichocarpa HOM05D003203 ORTHO05D003526 3.4e-166 589.3 410 72.9
SpUn0400_0010 Schrenkiella parvula HOM05D003203 ORTHO05D003526 1.4e-164 583.9 606 54.1
FAN22G0069 Fragaria x ananassa HOM05D003203 ORTHO05D003526 2.5e-156 556.6 485 60.4
FAN17G1981 Fragaria x ananassa HOM05D003203 ORTHO05D003526 2.3e-154 550.1 463 62.0
vmacro14071 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 3.9e-154 549.3 391 69.8
Aqoxy3G02869 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 5.7e-153 545.4 416 65.1
Peaxi162Scf00389g00932 Petunia axillaris HOM05D003203 ORTHO05D003526 1.3e-149 534.3 390 69.5
Nn2g13009 Nelumbo nucifera HOM05D003203 ORTHO05D003526 5.0e-149 532.3 382 70.7
Hund28195 Selenicereus undatus HOM05D003203 ORTHO05D003526 2.2e-133 480.3 424 60.1
Hund28197 Selenicereus undatus HOM05D003203 ORTHO05D003526 2.2e-133 480.3 424 60.1
MD03G1112400 Malus domestica HOM05D003203 ORTHO05D003526 4.9e-128 462.6 366 66.4
Mapoly0005s0012 Marchantia polymorpha HOM05D003203 ORTHO05D003526 3.4e-121 439.9 578 45.8
AagrBONN_evm.TU.Sc2ySwM_362.2654 Anthoceros agrestis HOM05D003203 ORTHO05D003526 1.3e-117 427.9 496 49.0
AagrBONN_evm.TU.Sc2ySwM_244.3 Anthoceros agrestis HOM05D003203 ORTHO05D003526 3.3e-116 423.3 496 48.6
AagrBONN_evm.TU.Sc2ySwM_117.4029 Anthoceros agrestis HOM05D003203 ORTHO05D003526 7.3e-116 422.2 496 48.6
arahy.Tifrunner.gnm1.ann1.VS5L85 Arachis hypogaea HOM05D003203 ORTHO05D003526 7.3e-116 422.2 544 47.8
AagrBONN_evm.TU.Sc2ySwM_117.4033 Anthoceros agrestis HOM05D003203 ORTHO05D003526 1.2e-115 421.4 496 48.4
AagrBONN_evm.TU.Sc2ySwM_341.1 Anthoceros agrestis HOM05D003203 ORTHO05D003526 1.2e-115 421.4 496 48.4
AagrBONN_evm.TU.Sc2ySwM_341.2 Anthoceros agrestis HOM05D003203 ORTHO05D003526 4.7e-115 419.5 496 48.4
AagrBONN_evm.TU.Sc2ySwM_117.4034 Anthoceros agrestis HOM05D003203 ORTHO05D003526 1.0e-114 418.3 496 48.2
Pp3c27_2850 Physcomitrium patens HOM05D003203 ORTHO05D003526 3.1e-114 416.8 505 47.1
SMO223G0015 Selaginella moellendorffii HOM05D003203 ORTHO05D003526 6.4e-112 409.1 485 48.7
CBR_g39406 Chara braunii HOM05D003203 ORTHO05D003526 7.3e-108 395.6 503 45.9
AagrBONN_evm.TU.Sc2ySwM_117.4032 Anthoceros agrestis HOM05D003203 ORTHO05D003526 7.3e-100 369.0 390 51.0
DCAR_024905 Daucus carota HOM05D003203 ORTHO05D003526 4.0e-82 310.1 279 58.1
Lsat_1_v5_gn_4_85140 Lactuca sativa HOM05D003203 ORTHO05D003526 5.3e-74 283.1 197 68.0
vmacro14465 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 2.4e-66 257.7 182 72.0
Nitab4.5_0000848g0100 Nicotiana tabacum HOM05D003203 ORTHO05D003526 1.5e-65 255.0 331 46.2
AL7G46970 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 7.6e-65 252.7 198 61.1
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 1.0e-64 252.3 179 65.9
CARHR007720 Cardamine hirsuta HOM05D003203 ORTHO05D003526 1.0e-61 242.3 193 62.2
vmacro14466 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 8.7e-61 239.2 226 60.2
AagrBONN_evm.TU.Sc2ySwM_246.1 Anthoceros agrestis HOM05D003203 ORTHO05D003526 2.1e-59 234.6 341 41.9
Gohir.A07G142600 Gossypium hirsutum HOM05D003203 ORTHO05D003526 1.1e-55 222.2 175 66.3
DCAR_024904 Daucus carota HOM05D003203 ORTHO05D003526 6.7e-53 213.0 264 48.5
TPR.G38674 Trifolium pratense HOM05D003203 ORTHO05D003526 3.4e-49 200.7 124 71.8
Dinv24673 Davidia involucrata HOM05D003203 ORTHO05D003526 5.0e-48 196.8 204 55.4
AagrBONN_evm.TU.Sc2ySwM_245.2 Anthoceros agrestis HOM05D003203 ORTHO05D003526 3.6e-46 190.7 313 39.9
Lj3g0013082 Lotus japonicus HOM05D003203 ORTHO05D003526 1.8e-45 188.3 223 52.5
RcHm_v2.0_Chr1g0326771 Rosa chinensis HOM05D003203 ORTHO05D003526 3.9e-45 187.2 176 57.4
Ah.01g014960 Amaranthus hybridus HOM05D003203 ORTHO05D003526 9.7e-44 182.6 251 47.4
Nitab4.5_0004347g0030 Nicotiana tabacum HOM05D003203 ORTHO05D003526 1.8e-42 178.3 163 57.1
Peaxi162Scf00389g00943 Petunia axillaris HOM05D003203 ORTHO05D003526 5.0e-40 170.2 196 52.6
vmacro14070 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 6.5e-40 169.9 284 41.2
Lsat_1_v5_gn_1_45160 Lactuca sativa HOM05D003203 ORTHO05D003526 8.5e-32 142.9 161 52.8
QL11p006401 Quercus lobata HOM05D003203 ORTHO05D003526 9.7e-28 129.4 82 75.6
QL11p006907 Quercus lobata HOM05D003203 ORTHO05D003526 9.7e-28 129.4 80 77.5
QL11p006896 Quercus lobata HOM05D003203 ORTHO05D003526 1.3e-27 129.0 116 58.6
vmacro14464 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 1.1e-26 125.9 83 73.5
TPR.G38645 Trifolium pratense HOM05D003203 ORTHO05D003526 4.1e-26 124.0 89 60.7
Lsat_1_v5_gn_8_71460 Lactuca sativa HOM05D006073 ORTHO05D007354 1.5e-20 105.5 60 80.0
Lsat_1_v5_gn_9_33601 Lactuca sativa HOM05D003172 ORTHO05D003526 1.7e-19 102.1 185 40.0
Lsat_1_v5_gn_8_153961 Lactuca sativa HOM05D003203 ORTHO05D003526 2.4e-18 98.2 168 41.7
CSS0004531 Camellia sinensis var. sinensis HOM05D003203 ORTHO05D003526 8.5e-16 89.7 82 57.3
RcHm_v2.0_Chr3g0490601 Rosa chinensis HOM05D003203 ORTHO05D003526 1.1e-15 89.4 146 40.4
TPR.G22000 Trifolium pratense HOM05D003203 ORTHO05D003526 7.2e-15 86.7 64 60.9
Cre07.g352800 Chlamydomonas reinhardtii HOM05D003203 ORTHO05D003526 1.6e-14 85.5 265 29.8
COL.COLO4_02731 Corchorus olitorius HOM05D003203 ORTHO05D003526 2.7e-14 84.7 55 72.7
Atru.chr3.3692 Acer truncatum HOM05D003203 ORTHO05D003526 6.1e-14 83.6 59 72.9
TPR.G2853 Trifolium pratense HOM05D003203 ORTHO05D003526 6.1e-14 83.6 50 84.0
Lsat_1_v5_gn_2_120 Lactuca sativa HOM05D003203 ORTHO05D003526 2.3e-13 81.6 123 39.8
Glyma.11G172800 Glycine max HOM05D003203 ORTHO05D003526 4.4e-12 77.4 145 39.3
Thhalv10023078m.g Eutrema salsugineum HOM05D003203 ORTHO05D003526 7.5e-12 76.6 124 38.7
Lsat_1_v5_gn_6_107780 Lactuca sativa HOM05D004503 ORTHO05D003526 7.5e-12 76.6 61 55.7
Gohir.A03G109301 Gossypium hirsutum HOM05D003203 ORTHO05D003526 9.8e-12 76.3 58 62.1
Gohir.A08G106700 Gossypium hirsutum HOM05D003203 ORTHO05D003526 1.7e-11 75.5 58 62.1
Nitab4.5_0010520g0030 Nicotiana tabacum HOM05D003203 ORTHO05D003526 2.4e-10 71.6 40 82.5
MELO3C000359.2 Cucumis melo HOM05D003203 ORTHO05D003526 4.1e-10 70.9 94 44.7
Hund10323 Selenicereus undatus HOM05D003203 ORTHO05D003526 4.3e-07 60.8 78 43.6
TPR.G33733 Trifolium pratense HOM05D003203 ORTHO05D003526 2.8e-06 58.2 32 78.1
Zm00001eb134270 Zea mays HOM05D003203 ORTHO05D003526 6.1e-06 57.0 41 73.2


User provided reference genes

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