Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_16815 Corylus avellana HOM05D004484 ORTHO05D005370 0.0e+00 1502.6 751 100.0
QL08p052472 Quercus lobata HOM05D004484 ORTHO05D005370 0.0e+00 1160.6 745 78.9
CiPaw.01G262000 Carya illinoinensis HOM05D004484 ORTHO05D005370 0.0e+00 1158.3 746 78.3
Cfa001721 Carpinus fangiana HOM05D004484 ORTHO05D005370 0.0e+00 1122.1 646 89.3
Dinv32377 Davidia involucrata HOM05D004484 ORTHO05D005370 0.0e+00 1075.5 748 71.5
Prupe.2G145600 Prunus persica HOM05D004484 ORTHO05D005370 2.1e-308 1062.0 746 72.4
Sed0020955 Sechium edule HOM05D004484 ORTHO05D005370 6.9e-299 1030.4 746 69.2
MD07G1121000 Malus domestica HOM05D004484 ORTHO05D005370 2.0e-298 1028.9 746 70.2
TWI23G0227 Tripterygium wilfordii HOM05D004484 ORTHO05D005370 4.2e-296 1021.1 744 69.1
GSVIVG01027610001 Vitis vinifera HOM05D004484 ORTHO05D005370 4.6e-295 1017.7 730 69.9
Hma1.2p1_0086F.1_g044870 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 6.0e-295 1017.3 743 69.3
Lalb_Chr13g0291731 Lupinus albus HOM05D004484 ORTHO05D005370 3.9e-294 1014.6 746 68.4
Ca_19886_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 1.3e-292 1009.6 744 68.3
ClCG05G002220 Citrullus lanatus HOM05D004484 ORTHO05D005370 1.3e-292 1009.6 748 68.3
Atru.chr5.309 Acer truncatum HOM05D004484 ORTHO05D005370 3.7e-292 1008.1 744 68.1
Oeu055487.1 Olea europaea HOM05D004484 ORTHO05D005370 8.1e-292 1006.9 747 67.9
FvH4_7g11900 Fragaria vesca HOM05D004484 ORTHO05D005370 1.1e-291 1006.5 746 67.0
CsaV3_3G009680 Cucumis sativus L. HOM05D004484 ORTHO05D005370 2.4e-291 1005.4 748 67.1
Medtr4g023560 Medicago truncatula HOM05D004484 ORTHO05D005370 2.4e-291 1005.4 746 68.5
Potri.014G069700 Populus trichocarpa HOM05D004484 ORTHO05D005370 5.3e-291 1004.2 746 68.0
CANSAT56G4533 Cannabis sativa HOM05D004484 ORTHO05D005370 6.9e-291 1003.8 748 68.0
FAN01G0628 Fragaria x ananassa HOM05D004484 ORTHO05D005370 9.0e-291 1003.4 746 66.8
Lj3g0013484 Lotus japonicus HOM05D004484 ORTHO05D005370 1.5e-290 1002.7 740 68.6
Nn1g01233 Nelumbo nucifera HOM05D004484 ORTHO05D005370 2.6e-290 1001.9 742 67.9
Thecc.01G376200 Theobroma cacao HOM05D004484 ORTHO05D005370 1.7e-289 999.2 748 66.3
FAN10G1483 Fragaria x ananassa HOM05D004484 ORTHO05D005370 8.4e-289 996.9 746 66.8
FAN10G2369 Fragaria x ananassa HOM05D004484 ORTHO05D005370 8.4e-289 996.9 746 66.6
Eucgr.E01418 Eucalyptus grandis HOM05D004484 ORTHO05D005370 1.4e-288 996.1 747 67.3
FAN06G1787 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.4e-288 996.1 746 66.8
CANSAT56G1200 Cannabis sativa HOM05D004484 ORTHO05D005370 1.9e-288 995.7 748 67.5
Lj7A528T57 Lonicera japonica HOM05D004484 ORTHO05D005370 9.3e-288 993.4 756 67.7
FAN06G3319 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.2e-287 993.0 746 66.4
Psat7g233440 Pisum sativum HOM05D004484 ORTHO05D005370 6.0e-287 990.7 744 67.6
Aqoxy5G00403 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 3.9e-286 988.0 747 66.9
Ca_27059_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 6.7e-286 987.3 744 66.9
Nitab4.5_0000457g0330 Nicotiana tabacum HOM05D004484 ORTHO05D005370 6.7e-286 987.3 750 65.6
Manes.01G265900 Manihot esculenta HOM05D004484 ORTHO05D005370 8.7e-286 986.9 746 67.2
Cc02_g36700 Coffea canephora HOM05D004484 ORTHO05D005370 7.4e-285 983.8 742 67.0
Cpa.g.sc18.115 Carica papaya HOM05D004484 ORTHO05D005370 1.1e-283 979.9 746 65.1
TAR629G2468 Trochodendron aralioides HOM05D004484 ORTHO05D005370 2.0e-282 975.7 727 67.7
CSS0036976 Camellia sinensis var. sinensis HOM05D004484 ORTHO05D005370 1.0e-281 973.4 752 66.9
DCAR_015907 Daucus carota HOM05D004484 ORTHO05D005370 1.1e-280 969.9 746 65.8
Sc02g0002590 Simmondsia chinensis HOM05D004484 ORTHO05D005370 1.4e-280 969.5 729 67.4
PSO478G5008 Papaver somniferum HOM05D004484 ORTHO05D005370 2.5e-280 968.8 746 66.2
Ciclev10019016m.g Citrus clementina HOM05D004484 ORTHO05D005370 3.2e-280 968.4 748 66.3
PGSC0003DMG400012761 Solanum tuberosum HOM05D004484 ORTHO05D005370 3.2e-280 968.4 742 64.7
ECA234G1700 Erigeron canadensis HOM05D004484 ORTHO05D005370 4.2e-280 968.0 741 65.7
Glyma.05G125700 Glycine max HOM05D004484 ORTHO05D005370 9.3e-280 966.8 747 66.7
Lalb_Chr12g0208261 Lupinus albus HOM05D004484 ORTHO05D005370 1.6e-279 966.1 746 65.0
Phvul.002G205800 Phaseolus vulgaris HOM05D004484 ORTHO05D005370 1.6e-279 966.1 742 66.6
arahy.Tifrunner.gnm1.ann1.V1M046 Arachis hypogaea HOM05D004484 ORTHO05D005370 2.1e-279 965.7 744 66.3
MELO3C006188.2 Cucumis melo HOM05D004484 ORTHO05D005370 2.7e-279 965.3 713 67.2
arahy.Tifrunner.gnm1.ann1.6K85L9 Arachis hypogaea HOM05D004484 ORTHO05D005370 6.1e-279 964.1 744 66.3
arahy.Tifrunner.gnm1.ann1.HW1IVJ Arachis hypogaea HOM05D004484 ORTHO05D005370 6.1e-279 964.1 744 66.3
Peaxi162Scf00021g01723 Petunia axillaris HOM05D004484 ORTHO05D005370 7.9e-279 963.8 742 65.0
CAN.G388.13 Capsicum annuum HOM05D004484 ORTHO05D005370 6.7e-278 960.7 738 64.6
arahy.Tifrunner.gnm1.ann1.Q9SWB6 Arachis hypogaea HOM05D004484 ORTHO05D005370 1.9e-277 959.1 744 65.9
HanXRQChr16g0520161 Helianthus annuus HOM05D004484 ORTHO05D005370 1.9e-277 959.1 746 64.6
PGR042G0667 Punica granatum HOM05D004484 ORTHO05D005370 1.9e-277 959.1 748 64.8
MSTRG.20748 Avicennia marina HOM05D004484 ORTHO05D005370 9.7e-277 956.8 747 64.7
MBI12_g10758_MAGBIO Magnolia biondii HOM05D004484 ORTHO05D005370 6.3e-276 954.1 778 63.8
Solyc01g091350.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 1.4e-275 953.0 742 63.7
SGA_v2.0_scaffold153G37012 Striga asiatica HOM05D004484 ORTHO05D005370 1.8e-275 952.6 746 63.9
Nitab4.5_0005372g0070 Nicotiana tabacum HOM05D004484 ORTHO05D005370 2.6e-274 948.7 760 63.4
Sabra14G0049400 Salix brachista HOM05D004484 ORTHO05D005370 7.7e-274 947.2 760 64.1
vmacro13399 Vaccinium macrocarpon HOM05D004484 ORTHO05D005370 8.5e-273 943.7 749 65.4
Sopen01g037090 Solanum pennellii HOM05D004484 ORTHO05D005370 1.1e-272 943.3 742 62.9
Migut.B01635 Erythranthe guttata HOM05D004484 ORTHO05D005370 1.4e-272 943.0 746 64.2
VMungo0251G1206 Vigna mungo HOM05D004484 ORTHO05D005370 4.6e-271 937.9 742 64.2
EL10Ac1g00900 Beta vulgaris HOM05D004484 ORTHO05D005370 1.4e-270 936.4 767 62.1
Gorai.007G091100 Gossypium raimondii HOM05D004484 ORTHO05D005370 2.3e-270 935.6 747 63.7
Gohir.D11G085300 Gossypium hirsutum HOM05D004484 ORTHO05D005370 3.3e-269 931.8 747 63.7
Gohir.A11G080700 Gossypium hirsutum HOM05D004484 ORTHO05D005370 4.8e-268 927.9 747 63.2
Lsat_1_v5_gn_4_43240 Lactuca sativa HOM05D004484 ORTHO05D005370 1.7e-265 919.5 740 63.2
AUR62004221 Chenopodium quinoa HOM05D004484 ORTHO05D005370 1.0e-262 910.2 778 60.7
FAN03G1897 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.4e-262 909.8 748 62.7
Aqoxy3G02138 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 3.1e-259 898.7 744 61.2
TPR.G9845 Trifolium pratense HOM05D004484 ORTHO05D005370 3.1e-259 898.7 777 61.3
Ah.13g073490 Amaranthus hybridus HOM05D004484 ORTHO05D005370 2.0e-253 879.4 772 59.3
GSVIVG01027609001 Vitis vinifera HOM05D004484 ORTHO05D005370 1.0e-249 867.1 716 62.3
THA.LOC104817247 Tarenaya hassleriana HOM05D004484 ORTHO05D005370 3.5e-242 842.0 743 58.7
BcaB04g17469 Brassica carinata HOM05D004484 ORTHO05D005370 4.2e-240 835.1 747 55.8
Carub.0001s3716 Capsella rubella HOM05D004484 ORTHO05D005370 4.2e-240 835.1 744 56.9
Sp1g35020 Schrenkiella parvula HOM05D004484 ORTHO05D005370 1.6e-239 833.2 734 56.3
AT1G48050 Arabidopsis thaliana HOM05D004484 ORTHO05D005370 2.1e-239 832.8 747 56.6
BcaC07g37180 Brassica carinata HOM05D004484 ORTHO05D005370 2.6e-237 825.9 748 56.1
SHI13523 Sapria himalayana HOM05D004484 ORTHO05D005370 4.4e-237 825.1 719 59.4
BraSC267t45947Z Brassica rapa HOM05D004484 ORTHO05D005370 5.7e-237 824.7 742 55.7
C08p05620 Brassica napus HOM05D004484 ORTHO05D005370 3.7e-236 822.0 742 55.9
BolC8t47375H Brassica oleracea HOM05D004484 ORTHO05D005370 3.7e-236 822.0 742 55.9
AUR62013627 Chenopodium quinoa HOM05D004484 ORTHO05D005370 7.0e-235 817.8 762 57.1
AL1G54570 Arabidopsis lyrata HOM05D004484 ORTHO05D005370 5.9e-234 814.7 730 56.2
CARHR037700 Cardamine hirsuta HOM05D004484 ORTHO05D005370 1.3e-233 813.5 746 55.0
A08p05330 Brassica napus HOM05D004484 ORTHO05D005370 6.1e-231 804.7 724 56.1
Hund27347 Selenicereus undatus HOM05D004484 ORTHO05D005370 1.5e-224 783.5 663 61.7
arahy.Tifrunner.gnm1.ann1.03ZR4A Arachis hypogaea HOM05D004484 ORTHO05D005370 6.6e-217 758.1 734 55.9
COL.COLO4_07018 Corchorus olitorius HOM05D004484 ORTHO05D005370 7.5e-213 744.6 610 62.1
arahy.Tifrunner.gnm1.ann1.5WGS6V Arachis hypogaea HOM05D004484 ORTHO05D005370 2.7e-210 736.1 713 55.8
HPP92_027818 Vanilla planifolia HOM05D004484 ORTHO05D005370 2.7e-210 736.1 740 52.3
Zm00001eb064930 Zea mays HOM05D004484 ORTHO05D005370 6.8e-206 721.5 724 51.8
COL.COLO4_12548 Corchorus olitorius HOM05D004484 ORTHO05D005370 1.9e-203 713.4 767 50.2
Hma1.2p1_0086F.1_g044880 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 3.0e-201 706.1 459 76.7
Potri.002G148200 Populus trichocarpa HOM05D004484 ORTHO05D005370 1.8e-198 696.8 547 64.9
arahy.Tifrunner.gnm1.ann1.5492A7 Arachis hypogaea HOM05D004484 ORTHO05D005370 2.0e-197 693.3 751 52.1
unitig_749.g13780 Utricularia gibba HOM05D004484 ORTHO05D005370 4.3e-192 675.6 629 56.0
arahy.Tifrunner.gnm1.ann1.T9R8PC Arachis hypogaea HOM05D004484 ORTHO05D005370 2.2e-188 663.3 734 51.0
Thhalv10011351m.g Eutrema salsugineum HOM05D004484 ORTHO05D005370 3.9e-185 652.5 726 49.0
CDE04G3156 Ceratophyllum demersum HOM05D004484 ORTHO05D005370 3.3e-184 649.4 732 49.2
Lj9C569T11 Lonicera japonica HOM05D004484 ORTHO05D005370 9.6e-176 621.3 523 60.8
Pp3c22_11100 Physcomitrium patens HOM05D004484 ORTHO05D005370 6.9e-174 615.1 757 43.6
Aa31LG10G5650 Aethionema arabicum HOM05D004484 ORTHO05D005370 3.4e-173 612.8 642 50.9
SMO367G0514 Selaginella moellendorffii HOM05D004484 ORTHO05D005370 3.0e-169 599.7 744 43.7
ATR0049G077 Amborella trichopoda HOM05D004484 ORTHO05D005370 1.1e-168 597.8 515 58.3
PGR119G1536 Punica granatum HOM05D004484 ORTHO05D005370 8.2e-159 565.1 573 52.4
RcHm_v2.0_Chr1g0350581 Rosa chinensis HOM05D004484 ORTHO05D005370 2.5e-155 553.5 438 63.7
Mapoly0129s0012 Marchantia polymorpha HOM05D004484 ORTHO05D005370 1.6e-154 550.8 690 42.2
AagrBONN_evm.TU.Sc2ySwM_368.3373 Anthoceros agrestis HOM05D004484 ORTHO05D005370 5.3e-142 509.2 741 38.5
RcHm_v2.0_Chr1g0350571 Rosa chinensis HOM05D004484 ORTHO05D005370 2.7e-125 453.8 297 76.1
CBR_g30081 Chara braunii HOM05D004484 ORTHO05D005370 5.6e-107 392.9 537 40.2
SHI38996 Sapria himalayana HOM05D004484 ORTHO05D005370 2.4e-86 324.3 201 74.6
Hma1.2p1_0701F.1_g205850 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 2.1e-74 284.6 335 50.7
SHI38095 Sapria himalayana HOM05D004484 ORTHO05D005370 1.3e-71 275.4 176 74.4
arahy.Tifrunner.gnm1.ann1.47H85H Arachis hypogaea HOM05D004484 ORTHO05D005370 1.5e-67 261.9 374 42.2
SHI38094 Sapria himalayana HOM05D004484 ORTHO05D005370 9.3e-62 242.7 211 58.3
Glyma.06G243967 Glycine max HOM05D004484 ORTHO05D005370 1.3e-52 212.2 144 68.1
QL08p052505 Quercus lobata HOM05D004484 ORTHO05D005370 1.5e-51 208.8 175 64.0
SEGI_20047 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 1.1e-49 202.6 222 49.1
Glyma.01G142851 Glycine max HOM05D004484 ORTHO05D005370 1.1e-46 192.6 221 48.0
Hma1.2p1_0170F.1_g075250 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.3e-44 185.7 202 52.0
Glyma.17G005802 Glycine max HOM05D004484 ORTHO05D005370 2.5e-43 181.4 196 55.1
SEGI_29754 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 1.4e-38 165.6 116 69.0
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 2.5e-38 164.9 312 35.3
CAN.G594.7 Capsicum annuum HOM05D004484 ORTHO05D005370 7.2e-38 163.3 105 74.3
SHI38995 Sapria himalayana HOM05D004484 ORTHO05D005370 5.7e-35 153.7 126 61.1
MCO15G158 Micromonas commoda HOM05D004484 ORTHO05D005370 1.3e-34 152.5 576 25.7
TPR.G22633 Trifolium pratense HOM05D004484 ORTHO05D005370 1.7e-34 152.1 92 78.3
CAN.G205.22 Capsicum annuum HOM05D004484 ORTHO05D005370 9.1e-33 146.4 96 71.9
SGA_v2.0_scaffold65G22170 Striga asiatica HOM05D004484 ORTHO05D005370 2.0e-32 145.2 201 41.3
Os03g0856200 Oryza sativa ssp. japonica HOM05D004484 ORTHO05D005370 2.2e-31 141.7 97 68.0
Eucgr.I00725 Eucalyptus grandis HOM05D004484 ORTHO05D005370 6.7e-28 130.2 82 74.4
Aa31LG10G5660 Aethionema arabicum HOM05D004484 ORTHO05D005370 7.4e-27 126.7 94 62.8
Solyc01g091430.2 Solanum lycopersicum HOM05D004484 ORTHO05D005370 1.1e-25 122.9 101 60.4
CAN.G388.14 Capsicum annuum HOM05D004484 ORTHO05D005370 2.6e-24 118.2 75 69.3
CAN.G279.6 Capsicum annuum HOM05D004484 ORTHO05D005370 9.4e-22 109.8 72 73.6
Glyma.06G243934 Glycine max HOM05D004484 ORTHO05D005370 2.3e-20 105.1 81 63.0
Glyma.06G244302 Glycine max HOM05D004484 ORTHO05D005370 6.7e-20 103.6 81 61.7
SGA_v2.0_scaffold10G05342 Striga asiatica HOM05D004484 ORTHO05D005370 7.5e-19 100.1 184 35.9
SGA_v2.0_scaffold172G39032 Striga asiatica HOM05D004484 ORTHO05D005370 1.7e-18 99.0 168 37.5
Eucgr.E01421 Eucalyptus grandis HOM05D004484 ORTHO05D005370 9.1e-17 93.2 66 68.2
Solyc01g091440.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 9.1e-17 93.2 133 43.6
SGA_v2.0_scaffold29G12247 Striga asiatica HOM05D004484 ORTHO05D005370 1.2e-16 92.8 187 35.3
Eucgr.L02075 Eucalyptus grandis HOM05D004484 ORTHO05D005370 8.5e-15 86.7 66 65.2
TPR.G9848 Trifolium pratense HOM05D000164 ORTHO05D000096 1.1e-14 86.3 55 70.9
CAN.G321.48 Capsicum annuum HOM05D001267 ORTHO05D002376 4.2e-14 84.3 80 55.0
PRCOL_00002704 Prasinoderma coloniale HOM05D004484 ORTHO05D005370 4.7e-13 80.9 246 30.5
Cre10.g423800 Chlamydomonas reinhardtii HOM05D004484 ORTHO05D005370 6.8e-12 77.0 521 22.5
arahy.Tifrunner.gnm1.ann1.0F06NC Arachis hypogaea HOM05D004484 ORTHO05D005370 1.3e-10 72.8 48 66.7
Oeu032522.1 Olea europaea HOM05D004484 ORTHO05D005370 1.8e-09 68.9 59 59.3
Hma1.2p1_1470F.1_g285600 Hydrangea macrophylla HOM05D000467 ORTHO05D011800 1.3e-07 62.8 53 62.3
AagrBONN_evm.TU.Sc2ySwM_368.3370 Anthoceros agrestis HOM05D004484 ORTHO05D005370 2.5e-06 58.5 111 30.6
unitig_749.g13781 Utricularia gibba HOM05D004484 ORTHO05D005370 5.5e-06 57.4 41 63.4


User provided reference genes

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