Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0520161 Helianthus annuus HOM05D004484 ORTHO05D005370 0.0e+00 1335.5 682 100.0
ECA234G1700 Erigeron canadensis HOM05D004484 ORTHO05D005370 0.0e+00 1178.7 688 85.8
Lsat_1_v5_gn_4_43240 Lactuca sativa HOM05D004484 ORTHO05D005370 0.0e+00 1107.8 685 82.2
Dinv32377 Davidia involucrata HOM05D004484 ORTHO05D005370 1.6e-294 1015.8 688 72.8
QL08p052472 Quercus lobata HOM05D004484 ORTHO05D005370 7.6e-289 996.9 689 71.4
Lj7A528T57 Lonicera japonica HOM05D004484 ORTHO05D005370 1.0e-288 996.5 696 72.4
Oeu055487.1 Olea europaea HOM05D004484 ORTHO05D005370 4.2e-287 991.1 688 71.4
Nitab4.5_0000457g0330 Nicotiana tabacum HOM05D004484 ORTHO05D005370 3.6e-286 988.0 691 70.9
CiPaw.01G262000 Carya illinoinensis HOM05D004484 ORTHO05D005370 1.4e-285 986.1 686 69.8
Hma1.2p1_0086F.1_g044870 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 5.1e-285 984.2 683 72.2
Prupe.2G145600 Prunus persica HOM05D004484 ORTHO05D005370 3.3e-284 981.5 684 71.5
Sed0020955 Sechium edule HOM05D004484 ORTHO05D005370 4.3e-284 981.1 687 70.2
Eucgr.E01418 Eucalyptus grandis HOM05D004484 ORTHO05D005370 5.7e-284 980.7 686 69.8
Cc02_g36700 Coffea canephora HOM05D004484 ORTHO05D005370 3.7e-283 978.0 688 70.1
MD07G1121000 Malus domestica HOM05D004484 ORTHO05D005370 1.5e-281 972.6 679 71.0
PGSC0003DMG400012761 Solanum tuberosum HOM05D004484 ORTHO05D005370 3.4e-281 971.5 691 69.6
Peaxi162Scf00021g01723 Petunia axillaris HOM05D004484 ORTHO05D005370 2.9e-280 968.4 691 69.9
MSTRG.20748 Avicennia marina HOM05D004484 ORTHO05D005370 5.0e-280 967.6 687 70.2
ClCG05G002220 Citrullus lanatus HOM05D004484 ORTHO05D005370 1.4e-279 966.1 687 69.7
CAN.G388.13 Capsicum annuum HOM05D004484 ORTHO05D005370 1.6e-278 962.6 687 69.1
GSVIVG01027610001 Vitis vinifera HOM05D004484 ORTHO05D005370 2.7e-278 961.8 671 70.9
DCAR_015907 Daucus carota HOM05D004484 ORTHO05D005370 1.0e-277 959.9 688 68.9
Sopen01g037090 Solanum pennellii HOM05D004484 ORTHO05D005370 7.4e-276 953.7 691 68.0
Haze_16815 Corylus avellana HOM05D004484 ORTHO05D005370 9.7e-276 953.4 746 64.6
CsaV3_3G009680 Cucumis sativus L. HOM05D004484 ORTHO05D005370 9.7e-276 953.4 689 67.9
Solyc01g091350.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 1.3e-275 953.0 691 68.2
Nitab4.5_0005372g0070 Nicotiana tabacum HOM05D004484 ORTHO05D005370 1.7e-275 952.6 702 68.2
TWI23G0227 Tripterygium wilfordii HOM05D004484 ORTHO05D005370 1.7e-275 952.6 688 68.6
Migut.B01635 Erythranthe guttata HOM05D004484 ORTHO05D005370 8.2e-275 950.3 689 70.2
SGA_v2.0_scaffold153G37012 Striga asiatica HOM05D004484 ORTHO05D005370 2.4e-274 948.7 689 68.4
Potri.014G069700 Populus trichocarpa HOM05D004484 ORTHO05D005370 3.1e-274 948.3 679 69.5
CSS0036976 Camellia sinensis var. sinensis HOM05D004484 ORTHO05D005370 1.5e-273 946.0 685 70.5
Manes.01G265900 Manihot esculenta HOM05D004484 ORTHO05D005370 7.7e-273 943.7 687 67.8
Sc02g0002590 Simmondsia chinensis HOM05D004484 ORTHO05D005370 1.3e-272 943.0 673 68.9
TAR629G2468 Trochodendron aralioides HOM05D004484 ORTHO05D005370 3.8e-272 941.4 671 69.2
Lalb_Chr13g0291731 Lupinus albus HOM05D004484 ORTHO05D005370 6.5e-272 940.6 687 67.8
PSO478G5008 Papaver somniferum HOM05D004484 ORTHO05D005370 8.5e-272 940.3 690 67.5
Nn1g01233 Nelumbo nucifera HOM05D004484 ORTHO05D005370 1.9e-271 939.1 687 68.1
Ca_19886_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 3.2e-271 938.3 683 67.1
Atru.chr5.309 Acer truncatum HOM05D004484 ORTHO05D005370 5.5e-271 937.6 684 66.5
CANSAT56G4533 Cannabis sativa HOM05D004484 ORTHO05D005370 2.1e-270 935.6 689 67.5
FvH4_7g11900 Fragaria vesca HOM05D004484 ORTHO05D005370 6.7e-269 930.6 686 67.2
Medtr4g023560 Medicago truncatula HOM05D004484 ORTHO05D005370 8.8e-269 930.2 683 66.5
vmacro13399 Vaccinium macrocarpon HOM05D004484 ORTHO05D005370 4.4e-268 927.9 688 68.3
Aqoxy5G00403 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 1.7e-267 926.0 689 66.5
CANSAT56G1200 Cannabis sativa HOM05D004484 ORTHO05D005370 1.7e-267 926.0 689 66.6
Thecc.01G376200 Theobroma cacao HOM05D004484 ORTHO05D005370 1.7e-267 926.0 688 65.4
FAN01G0628 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.8e-267 925.2 686 66.6
FAN10G1483 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.8e-266 922.5 686 66.9
MELO3C006188.2 Cucumis melo HOM05D004484 ORTHO05D005370 4.1e-266 921.4 654 69.3
FAN06G1787 Fragaria x ananassa HOM05D004484 ORTHO05D005370 7.0e-266 920.6 686 66.8
Lj3g0013484 Lotus japonicus HOM05D004484 ORTHO05D005370 7.0e-266 920.6 683 66.2
FAN06G3319 Fragaria x ananassa HOM05D004484 ORTHO05D005370 9.1e-266 920.2 686 66.6
Ca_27059_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 1.2e-265 919.8 683 66.3
FAN10G2369 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.0e-265 919.1 686 66.8
PGR042G0667 Punica granatum HOM05D004484 ORTHO05D005370 2.6e-265 918.7 691 65.4
Psat7g233440 Pisum sativum HOM05D004484 ORTHO05D005370 1.3e-264 916.4 683 65.6
Ciclev10019016m.g Citrus clementina HOM05D004484 ORTHO05D005370 3.2e-263 911.8 688 66.0
arahy.Tifrunner.gnm1.ann1.V1M046 Arachis hypogaea HOM05D004484 ORTHO05D005370 2.0e-260 902.5 687 65.8
arahy.Tifrunner.gnm1.ann1.6K85L9 Arachis hypogaea HOM05D004484 ORTHO05D005370 7.5e-260 900.6 687 65.8
arahy.Tifrunner.gnm1.ann1.HW1IVJ Arachis hypogaea HOM05D004484 ORTHO05D005370 7.5e-260 900.6 687 65.8
EL10Ac1g00900 Beta vulgaris HOM05D004484 ORTHO05D005370 2.8e-259 898.7 708 62.6
Gorai.007G091100 Gossypium raimondii HOM05D004484 ORTHO05D005370 2.8e-259 898.7 684 64.5
arahy.Tifrunner.gnm1.ann1.Q9SWB6 Arachis hypogaea HOM05D004484 ORTHO05D005370 3.7e-259 898.3 687 65.6
Cpa.g.sc18.115 Carica papaya HOM05D004484 ORTHO05D005370 8.2e-259 897.1 687 65.1
Gohir.D11G085300 Gossypium hirsutum HOM05D004484 ORTHO05D005370 2.4e-258 895.6 684 64.5
Gohir.A11G080700 Gossypium hirsutum HOM05D004484 ORTHO05D005370 3.1e-258 895.2 684 64.3
AUR62004221 Chenopodium quinoa HOM05D004484 ORTHO05D005370 1.2e-257 893.3 719 62.0
MBI12_g10758_MAGBIO Magnolia biondii HOM05D004484 ORTHO05D005370 7.7e-257 890.6 721 62.7
Sabra14G0049400 Salix brachista HOM05D004484 ORTHO05D005370 2.2e-256 889.0 695 64.6
Lalb_Chr12g0208261 Lupinus albus HOM05D004484 ORTHO05D005370 3.6e-254 881.7 687 63.6
Glyma.05G125700 Glycine max HOM05D004484 ORTHO05D005370 1.8e-253 879.4 688 64.4
Phvul.002G205800 Phaseolus vulgaris HOM05D004484 ORTHO05D005370 2.3e-253 879.0 686 64.4
VMungo0251G1206 Vigna mungo HOM05D004484 ORTHO05D005370 4.0e-253 878.2 675 63.9
Aqoxy3G02138 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 1.2e-244 850.1 685 61.6
Ah.13g073490 Amaranthus hybridus HOM05D004484 ORTHO05D005370 7.5e-244 847.4 711 60.2
FAN03G1897 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.4e-242 842.4 687 62.4
Sp1g35020 Schrenkiella parvula HOM05D004484 ORTHO05D005370 3.6e-238 828.6 670 59.9
TPR.G9845 Trifolium pratense HOM05D004484 ORTHO05D005370 3.6e-238 828.6 716 58.9
Cfa001721 Carpinus fangiana HOM05D004484 ORTHO05D005370 3.1e-237 825.5 584 70.4
AT1G48050 Arabidopsis thaliana HOM05D004484 ORTHO05D005370 6.8e-237 824.3 679 59.8
GSVIVG01027609001 Vitis vinifera HOM05D004484 ORTHO05D005370 1.5e-236 823.2 658 63.8
BcaC07g37180 Brassica carinata HOM05D004484 ORTHO05D005370 2.9e-235 818.9 681 59.5
THA.LOC104817247 Tarenaya hassleriana HOM05D004484 ORTHO05D005370 2.9e-235 818.9 679 59.5
BcaB04g17469 Brassica carinata HOM05D004484 ORTHO05D005370 6.4e-235 817.8 679 58.5
BraSC267t45947Z Brassica rapa HOM05D004484 ORTHO05D005370 1.1e-234 817.0 675 59.0
Carub.0001s3716 Capsella rubella HOM05D004484 ORTHO05D005370 1.1e-234 817.0 680 59.0
C08p05620 Brassica napus HOM05D004484 ORTHO05D005370 1.2e-233 813.5 675 59.1
BolC8t47375H Brassica oleracea HOM05D004484 ORTHO05D005370 1.2e-233 813.5 675 59.1
SHI13523 Sapria himalayana HOM05D004484 ORTHO05D005370 7.3e-231 804.3 655 62.4
CARHR037700 Cardamine hirsuta HOM05D004484 ORTHO05D005370 1.2e-230 803.5 679 58.5
AL1G54570 Arabidopsis lyrata HOM05D004484 ORTHO05D005370 2.1e-230 802.7 663 59.3
A08p05330 Brassica napus HOM05D004484 ORTHO05D005370 8.0e-230 800.8 664 59.0
AUR62013627 Chenopodium quinoa HOM05D004484 ORTHO05D005370 1.8e-229 799.7 703 58.3
Zm00001eb064930 Zea mays HOM05D004484 ORTHO05D005370 8.3e-219 764.2 668 57.9
Hund27347 Selenicereus undatus HOM05D004484 ORTHO05D005370 3.3e-215 752.3 606 63.7
COL.COLO4_07018 Corchorus olitorius HOM05D004484 ORTHO05D005370 2.9e-211 739.2 540 66.5
HPP92_027818 Vanilla planifolia HOM05D004484 ORTHO05D005370 7.8e-209 731.1 688 55.1
arahy.Tifrunner.gnm1.ann1.5WGS6V Arachis hypogaea HOM05D004484 ORTHO05D005370 2.6e-204 716.1 655 57.7
arahy.Tifrunner.gnm1.ann1.03ZR4A Arachis hypogaea HOM05D004484 ORTHO05D005370 1.7e-203 713.4 698 54.7
COL.COLO4_12548 Corchorus olitorius HOM05D004484 ORTHO05D005370 1.5e-196 690.3 712 50.7
unitig_749.g13780 Utricularia gibba HOM05D004484 ORTHO05D005370 1.3e-192 677.2 558 61.6
arahy.Tifrunner.gnm1.ann1.5492A7 Arachis hypogaea HOM05D004484 ORTHO05D005370 1.8e-189 666.8 676 54.0
arahy.Tifrunner.gnm1.ann1.T9R8PC Arachis hypogaea HOM05D004484 ORTHO05D005370 2.2e-187 659.8 675 53.8
Lj9C569T11 Lonicera japonica HOM05D004484 ORTHO05D005370 3.8e-187 659.1 468 69.2
Hma1.2p1_0086F.1_g044880 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 2.5e-186 656.4 446 73.1
Potri.002G148200 Populus trichocarpa HOM05D004484 ORTHO05D005370 2.5e-186 656.4 488 67.6
Thhalv10011351m.g Eutrema salsugineum HOM05D004484 ORTHO05D005370 1.3e-179 634.0 643 52.4
Pp3c22_11100 Physcomitrium patens HOM05D004484 ORTHO05D005370 8.4e-179 631.3 686 49.0
CDE04G3156 Ceratophyllum demersum HOM05D004484 ORTHO05D005370 3.3e-175 619.4 677 49.0
ATR0049G077 Amborella trichopoda HOM05D004484 ORTHO05D005370 2.2e-174 616.7 459 64.9
Aa31LG10G5650 Aethionema arabicum HOM05D004484 ORTHO05D005370 5.0e-171 605.5 576 55.4
SMO367G0514 Selaginella moellendorffii HOM05D004484 ORTHO05D005370 2.7e-169 599.7 689 47.2
Mapoly0129s0012 Marchantia polymorpha HOM05D004484 ORTHO05D005370 3.1e-165 586.3 635 48.0
PGR119G1536 Punica granatum HOM05D004484 ORTHO05D005370 1.5e-159 567.4 517 56.5
RcHm_v2.0_Chr1g0350581 Rosa chinensis HOM05D004484 ORTHO05D005370 4.7e-153 545.8 382 69.1
AagrBONN_evm.TU.Sc2ySwM_368.3373 Anthoceros agrestis HOM05D004484 ORTHO05D005370 9.7e-143 511.5 689 39.5
CBR_g30081 Chara braunii HOM05D004484 ORTHO05D005370 6.8e-112 409.1 453 45.5
RcHm_v2.0_Chr1g0350571 Rosa chinensis HOM05D004484 ORTHO05D005370 2.9e-102 377.1 303 63.7
SHI38996 Sapria himalayana HOM05D004484 ORTHO05D005370 1.1e-82 312.0 203 73.9
SHI38095 Sapria himalayana HOM05D004484 ORTHO05D005370 8.7e-75 285.8 190 72.6
Hma1.2p1_0701F.1_g205850 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.9e-74 284.6 276 57.6
SHI38094 Sapria himalayana HOM05D004484 ORTHO05D005370 6.1e-60 236.5 212 57.5
arahy.Tifrunner.gnm1.ann1.47H85H Arachis hypogaea HOM05D004484 ORTHO05D005370 4.8e-57 226.9 333 42.3
Glyma.06G243967 Glycine max HOM05D004484 ORTHO05D005370 3.6e-52 210.7 143 67.8
SEGI_20047 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 2.5e-45 188.0 221 45.2
Glyma.01G142851 Glycine max HOM05D004484 ORTHO05D005370 4.7e-44 183.7 165 55.2
MCO15G158 Micromonas commoda HOM05D004484 ORTHO05D005370 2.6e-42 177.9 521 28.2
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 9.7e-42 176.0 248 42.7
Hma1.2p1_0170F.1_g075250 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 2.0e-39 168.3 202 50.5
SHI38995 Sapria himalayana HOM05D004484 ORTHO05D005370 3.8e-38 164.1 126 66.7
Glyma.17G005802 Glycine max HOM05D004484 ORTHO05D005370 1.1e-37 162.5 192 51.0
QL08p052505 Quercus lobata HOM05D004484 ORTHO05D005370 1.1e-37 162.5 171 52.0
SEGI_29754 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 4.0e-35 154.1 116 67.2
CAN.G594.7 Capsicum annuum HOM05D004484 ORTHO05D005370 6.7e-35 153.3 105 72.4
TPR.G22633 Trifolium pratense HOM05D004484 ORTHO05D005370 1.5e-34 152.1 92 82.6
SGA_v2.0_scaffold65G22170 Striga asiatica HOM05D004484 ORTHO05D005370 4.8e-33 147.1 201 42.8
CAN.G205.22 Capsicum annuum HOM05D004484 ORTHO05D005370 2.0e-31 141.7 96 68.8
Os03g0856200 Oryza sativa ssp. japonica HOM05D004484 ORTHO05D005370 3.6e-28 131.0 97 61.9
Aa31LG10G5660 Aethionema arabicum HOM05D004484 ORTHO05D005370 8.8e-27 126.3 94 62.8
Eucgr.I00725 Eucalyptus grandis HOM05D004484 ORTHO05D005370 4.4e-26 124.0 82 73.2
Solyc01g091430.2 Solanum lycopersicum HOM05D004484 ORTHO05D005370 8.3e-25 119.8 98 61.2
CAN.G388.14 Capsicum annuum HOM05D004484 ORTHO05D005370 3.2e-21 107.8 73 64.4
CAN.G279.6 Capsicum annuum HOM05D004484 ORTHO05D005370 2.7e-20 104.8 72 70.8
SGA_v2.0_scaffold10G05342 Striga asiatica HOM05D004484 ORTHO05D005370 6.8e-19 100.1 191 36.1
SGA_v2.0_scaffold172G39032 Striga asiatica HOM05D004484 ORTHO05D005370 3.4e-18 97.8 168 38.1
SGA_v2.0_scaffold29G12247 Striga asiatica HOM05D004484 ORTHO05D005370 1.8e-16 92.0 187 36.4
PRCOL_00002704 Prasinoderma coloniale HOM05D004484 ORTHO05D005370 1.6e-15 89.0 477 24.9
Solyc01g091440.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 3.5e-15 87.8 133 41.4
Cfa025796 Carpinus fangiana HOM05D004484 ORTHO05D005370 1.7e-14 85.5 328 25.9
Eucgr.E01421 Eucalyptus grandis HOM05D004484 ORTHO05D005370 1.1e-13 82.8 63 57.1
TPR.G9848 Trifolium pratense HOM05D000164 ORTHO05D000096 1.9e-13 82.0 55 65.5
Glyma.06G243934 Glycine max HOM05D004484 ORTHO05D005370 1.0e-11 76.3 82 46.3
Glyma.06G244302 Glycine max HOM05D004484 ORTHO05D005370 3.0e-11 74.7 82 45.1
CAN.G321.48 Capsicum annuum HOM05D001267 ORTHO05D002376 4.0e-11 74.3 80 51.2
Eucgr.L02075 Eucalyptus grandis HOM05D004484 ORTHO05D005370 4.0e-11 74.3 61 55.7
arahy.Tifrunner.gnm1.ann1.0F06NC Arachis hypogaea HOM05D004484 ORTHO05D005370 8.9e-11 73.2 53 62.3
Hma1.2p1_1470F.1_g285600 Hydrangea macrophylla HOM05D000467 ORTHO05D011800 7.0e-08 63.5 46 69.6
Oeu032522.1 Olea europaea HOM05D004484 ORTHO05D005370 7.8e-07 60.1 59 49.2
unitig_749.g13781 Utricularia gibba HOM05D004484 ORTHO05D005370 5.0e-06 57.4 41 65.9


User provided reference genes

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