Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0016911 Helianthus annuus HOM05D002182 ORTHO05D004671 8.6e-69 263.5 127 100.0
Lsat_1_v5_gn_1_78841 Lactuca sativa HOM05D002182 ORTHO05D004671 3.3e-44 181.8 92 91.3
Dinv35485 Davidia involucrata HOM05D002182 ORTHO05D004671 1.4e-42 176.4 96 82.3
Nitab4.5_0000120g0170 Nicotiana tabacum HOM05D002182 ORTHO05D004671 4.0e-42 174.9 106 75.5
Ciclev10003112m.g Citrus clementina HOM05D002182 ORTHO05D004671 6.9e-42 174.1 97 79.4
Lj4C830T7 Lonicera japonica HOM05D002182 ORTHO05D004671 9.0e-42 173.7 102 80.4
COL.COLO4_35815 Corchorus olitorius HOM05D002182 ORTHO05D004671 1.2e-41 173.3 93 84.9
Solyc05g014750.2 Solanum lycopersicum HOM05D002182 ORTHO05D004671 1.2e-41 173.3 103 78.6
PGSC0003DMG401017464 Solanum tuberosum HOM05D002182 ORTHO05D004671 1.2e-41 173.3 101 79.2
CAN.G163.2 Capsicum annuum HOM05D002182 ORTHO05D004671 1.5e-41 172.9 101 79.2
Migut.H00785 Erythranthe guttata HOM05D002182 ORTHO05D004671 2.6e-41 172.2 108 76.9
Nitab4.5_0001277g0020 Nicotiana tabacum HOM05D002182 ORTHO05D004671 2.6e-41 172.2 103 75.7
Sopen05g009910 Solanum pennellii HOM05D002182 ORTHO05D004671 2.6e-41 172.2 101 79.2
CiPaw.04G079900 Carya illinoinensis HOM05D002182 ORTHO05D004671 3.4e-41 171.8 96 80.2
Lalb_Chr11g0068591 Lupinus albus HOM05D002182 ORTHO05D004671 4.5e-41 171.4 96 81.2
Peaxi162Scf00151g00610 Petunia axillaris HOM05D002182 ORTHO05D004671 5.8e-41 171.0 100 79.0
Migut.H00803 Erythranthe guttata HOM05D002182 ORTHO05D004671 7.6e-41 170.6 108 75.9
Atru.chr4.980 Acer truncatum HOM05D002182 ORTHO05D004671 9.9e-41 170.2 97 79.4
Thecc.01G137400 Theobroma cacao HOM05D002182 ORTHO05D004671 9.9e-41 170.2 92 80.4
Medtr3g096640 Medicago truncatula HOM05D002182 ORTHO05D004671 1.3e-40 169.9 96 79.2
PGR102G1182 Punica granatum HOM05D002182 ORTHO05D004671 2.9e-40 168.7 97 79.4
ClCG10G017010 Citrullus lanatus HOM05D002182 ORTHO05D004671 4.9e-40 167.9 96 82.3
RcHm_v2.0_Chr2g0122231 Rosa chinensis HOM05D002182 ORTHO05D004671 4.9e-40 167.9 94 81.9
Gohir.A11G057650 Gossypium hirsutum HOM05D002182 ORTHO05D004671 6.4e-40 167.5 92 80.4
Gohir.D11G061900 Gossypium hirsutum HOM05D002182 ORTHO05D004671 1.1e-39 166.8 92 80.4
TPR.G33581 Trifolium pratense HOM05D002182 ORTHO05D004671 1.1e-39 166.8 95 78.9
Ca_16971_v3 Cicer arietinum L. HOM05D002182 ORTHO05D004671 1.4e-39 166.4 95 77.9
arahy.Tifrunner.gnm1.ann1.XVSB6Y Arachis hypogaea HOM05D002182 ORTHO05D004671 1.9e-39 166.0 96 77.1
Duzib264G0915 Durio zibethinus HOM05D002182 ORTHO05D004671 1.9e-39 166.0 92 80.4
Haze_25331 Corylus avellana HOM05D002182 ORTHO05D004671 2.4e-39 165.6 96 78.1
Gorai.007G066700 Gossypium raimondii HOM05D002182 ORTHO05D004671 3.2e-39 165.2 92 79.3
Nn5g28440 Nelumbo nucifera HOM05D002182 ORTHO05D004671 7.1e-39 164.1 95 76.8
Sed0010212 Sechium edule HOM05D002182 ORTHO05D004671 1.2e-38 163.3 96 79.2
arahy.Tifrunner.gnm1.ann1.K5KUZ3 Arachis hypogaea HOM05D002182 ORTHO05D004671 1.6e-38 162.9 96 76.0
CsaV3_3G039390 Cucumis sativus L. HOM05D002182 ORTHO05D004671 1.6e-38 162.9 96 79.2
Cc07_g19240 Coffea canephora HOM05D002182 ORTHO05D004671 2.1e-38 162.5 100 75.0
Cc07_g20300 Coffea canephora HOM05D002182 ORTHO05D004671 2.1e-38 162.5 106 74.5
VMungo1309G0220 Vigna mungo HOM05D002182 ORTHO05D004671 2.1e-38 162.5 92 79.3
Eucgr.H05141 Eucalyptus grandis HOM05D002182 ORTHO05D004671 3.5e-38 161.8 97 75.3
TAR376G0522 Trochodendron aralioides HOM05D002182 ORTHO05D004671 3.5e-38 161.8 96 75.0
Glyma.06G155600 Glycine max HOM05D002182 ORTHO05D004671 7.9e-38 160.6 92 78.3
COL.COLO4_35769 Corchorus olitorius HOM05D003519 ORTHO05D004443 1.0e-37 160.2 87 82.8
ECA248G2894 Erigeron canadensis HOM05D002182 ORTHO05D004671 1.0e-37 160.2 102 78.4
Phvul.009G154850 Phaseolus vulgaris HOM05D002182 ORTHO05D004671 1.0e-37 160.2 92 78.3
Actinidia20029 Actinidia chinensis HOM05D002182 ORTHO05D004671 1.3e-37 159.8 99 75.8
MELO3C009682.2 Cucumis melo HOM05D002182 ORTHO05D004671 1.3e-37 159.8 96 78.1
FvH4_1g24710 Fragaria vesca HOM05D002182 ORTHO05D004671 1.8e-37 159.5 92 79.3
FAN26G0537 Fragaria x ananassa HOM05D002182 ORTHO05D004671 1.8e-37 159.5 92 79.3
Rhsim10G0124200 Rhododendron simsii HOM05D002182 ORTHO05D004671 1.8e-37 159.5 96 74.0
CDE09G0651 Ceratophyllum demersum HOM05D002182 ORTHO05D004671 2.3e-37 159.1 104 69.2
COL.COLO4_33656 Corchorus olitorius HOM05D002182 ORTHO05D004671 2.3e-37 159.1 93 80.6
Lj1g0008046 Lotus japonicus HOM05D002182 ORTHO05D004671 2.3e-37 159.1 92 79.3
FAN19G2097 Fragaria x ananassa HOM05D002182 ORTHO05D004671 3.9e-37 158.3 98 75.5
MBI07_g33104_MAGBIO Magnolia biondii HOM05D002182 ORTHO05D004671 3.9e-37 158.3 97 74.2
Cpa.g.sc37.4 Carica papaya HOM05D002182 ORTHO05D004671 8.7e-37 157.1 96 76.0
Psat5g060640 Pisum sativum HOM05D002182 ORTHO05D004671 8.7e-37 157.1 95 73.7
Sabra05G0055200 Salix brachista HOM05D002182 ORTHO05D004671 1.1e-36 156.8 92 80.4
TWI79G1433 Tripterygium wilfordii HOM05D002182 ORTHO05D004671 1.1e-36 156.8 97 74.2
CSS0026830 Camellia sinensis var. sinensis HOM05D002182 ORTHO05D004671 1.5e-36 156.4 102 70.6
FAN23G2830 Fragaria x ananassa HOM05D002182 ORTHO05D004671 1.9e-36 156.0 92 78.3
Manes.13G078050 Manihot esculenta HOM05D002182 ORTHO05D004671 1.9e-36 156.0 94 75.5
AUR62000512 Chenopodium quinoa HOM05D002182 ORTHO05D004671 2.5e-36 155.6 96 76.0
AUR62006857 Chenopodium quinoa HOM05D002182 ORTHO05D004671 2.5e-36 155.6 96 76.0
QL10p041326 Quercus lobata HOM05D002182 ORTHO05D004671 3.3e-36 155.2 103 70.9
Sabra11G0021400 Salix brachista HOM05D002182 ORTHO05D004671 3.3e-36 155.2 92 78.3
SHI11490 Sapria himalayana HOM05D002182 ORTHO05D004671 3.3e-36 155.2 92 76.1
GSVIVG01026459001 Vitis vinifera HOM05D002182 ORTHO05D004671 4.3e-36 154.8 92 76.1
Prupe.4G275500 Prunus persica HOM05D002182 ORTHO05D004671 5.6e-36 154.5 92 76.1
EL10Ac4g09621 Beta vulgaris HOM05D002182 ORTHO05D004671 7.4e-36 154.1 94 76.6
Carub.0008s2470 Capsella rubella HOM05D002182 ORTHO05D004671 9.6e-36 153.7 96 74.0
Ah.06g191020 Amaranthus hybridus HOM05D002182 ORTHO05D004671 1.3e-35 153.3 96 74.0
AL8G41160 Arabidopsis lyrata HOM05D002182 ORTHO05D004671 1.3e-35 153.3 96 74.0
Cfa002178 Carpinus fangiana HOM05D002182 ORTHO05D004671 1.3e-35 153.3 89 77.5
Sabra14G0091800 Salix brachista HOM05D002182 ORTHO05D004671 1.3e-35 153.3 92 77.2
AT5G63920 Arabidopsis thaliana HOM05D002182 ORTHO05D004671 1.6e-35 152.9 96 74.0
BcaB07g29709 Brassica carinata HOM05D002182 ORTHO05D004671 1.6e-35 152.9 96 74.0
BcaC03g18232 Brassica carinata HOM05D002182 ORTHO05D004671 1.6e-35 152.9 96 74.0
A02p43050 Brassica napus HOM05D002182 ORTHO05D004671 1.6e-35 152.9 96 74.0
BolC2t12375H Brassica oleracea HOM05D002182 ORTHO05D004671 1.6e-35 152.9 96 74.0
BraA02t09226Z Brassica rapa HOM05D002182 ORTHO05D004671 1.6e-35 152.9 96 74.0
Potri.005G067100 Populus trichocarpa HOM05D002182 ORTHO05D004671 1.6e-35 152.9 92 77.2
Thhalv10003618m.g Eutrema salsugineum HOM05D002182 ORTHO05D004671 2.8e-35 152.1 96 72.9
Aa31LG1G17970 Aethionema arabicum HOM05D002182 ORTHO05D004671 3.7e-35 151.8 96 72.9
Oeu050090.2 Olea europaea HOM05D002182 ORTHO05D004671 3.7e-35 151.8 99 73.7
Os03g0165000 Oryza sativa ssp. japonica HOM05D002182 ORTHO05D004671 4.8e-35 151.4 99 70.7
Hund21801 Selenicereus undatus HOM05D002182 ORTHO05D004671 8.1e-35 150.6 96 72.9
CARHR277840 Cardamine hirsuta HOM05D002182 ORTHO05D004671 1.1e-34 150.2 96 72.9
C02p63010 Brassica napus HOM05D002182 ORTHO05D004671 1.4e-34 149.8 96 72.9
SGA_v2.0_scaffold54G19590 Striga asiatica HOM05D002182 ORTHO05D004671 1.4e-34 149.8 108 64.8
THA.LOC104818422 Tarenaya hassleriana HOM05D002182 ORTHO05D004671 1.4e-34 149.8 96 72.9
DCAR_023889 Daucus carota HOM05D002182 ORTHO05D004671 1.8e-34 149.4 93 75.3
Sabra09G0025500 Salix brachista HOM05D002182 ORTHO05D004671 1.8e-34 149.4 97 74.2
Sabra14G0026900 Salix brachista HOM05D002182 ORTHO05D004671 1.8e-34 149.4 97 74.2
Sp2g26990 Schrenkiella parvula HOM05D002182 ORTHO05D004671 1.8e-34 149.4 96 71.9
vmacro12743 Vaccinium macrocarpon HOM05D002182 ORTHO05D004671 1.8e-34 149.4 95 72.6
CSS0041549 Camellia sinensis var. sinensis HOM05D002182 ORTHO05D004671 3.1e-34 148.7 96 70.8
CANSAT01G2275 Cannabis sativa HOM05D002182 ORTHO05D004671 3.1e-34 148.7 96 71.9
HPP92_005922 Vanilla planifolia HOM05D002182 ORTHO05D004671 3.1e-34 148.7 98 71.4
HPP92_005924 Vanilla planifolia HOM05D002182 ORTHO05D004671 3.1e-34 148.7 98 71.4
ATR1001G007 Amborella trichopoda HOM05D002182 ORTHO05D004671 6.9e-34 147.5 92 73.9
MD15G1134700 Malus domestica HOM05D002182 ORTHO05D004671 9.0e-34 147.1 101 71.3
unitig_62.g23374 Utricularia gibba HOM05D002182 ORTHO05D004671 9.0e-34 147.1 95 68.4
Mapoly0113s0011 Marchantia polymorpha HOM05D002182 ORTHO05D004671 1.5e-33 146.4 91 75.8
Zm00001eb005010 Zea mays HOM05D002182 ORTHO05D004671 3.8e-32 141.7 96 68.8
Pp3c21_9710 Physcomitrium patens HOM05D002182 ORTHO05D004671 4.9e-32 141.4 94 71.3
PSO384G2582 Papaver somniferum HOM05D002182 ORTHO05D004671 1.2e-30 136.7 94 72.3
SEGI_35171 Sequoiadendron giganteum HOM05D002182 ORTHO05D004671 4.6e-30 134.8 92 69.6
PSO443G0075 Papaver somniferum HOM05D002182 ORTHO05D004671 2.3e-29 132.5 104 67.3
Aqoxy5G02289 Aquilegia oxysepala HOM05D002182 ORTHO05D004671 2.1e-27 125.9 95 62.1
SMO114G0082 Selaginella moellendorffii HOM05D002182 ORTHO05D004671 1.8e-26 122.9 93 59.1
MCO11G433 Micromonas commoda HOM05D002182 ORTHO05D004671 9.7e-20 100.5 94 54.3
PRCOL_00003192 Prasinoderma coloniale HOM05D002182 ORTHO05D004671 2.8e-19 99.0 89 57.3
Haze_26976 Corylus avellana HOM05D002182 ORTHO05D004671 2.7e-14 82.4 91 47.3
HanXRQChr16g0517731 Helianthus annuus HOM05D002182 ORTHO05D004671 1.7e-11 73.2 91 42.9
Cc03_g09640 Coffea canephora HOM05D002182 ORTHO05D008382 2.8e-11 72.4 89 41.6
Phvul.001G264300 Phaseolus vulgaris HOM05D002182 ORTHO05D008382 2.8e-11 72.4 88 37.5
Haze_26984 Corylus avellana HOM05D002182 ORTHO05D008382 3.7e-11 72.0 86 43.0
Eucgr.L00646 Eucalyptus grandis HOM05D002182 ORTHO05D008382 3.7e-11 72.0 115 39.1
FvH4_4g12750 Fragaria vesca HOM05D002182 ORTHO05D008382 3.7e-11 72.0 87 40.2
FAN12G0184 Fragaria x ananassa HOM05D002182 ORTHO05D008382 3.7e-11 72.0 87 40.2
FAN22G0833 Fragaria x ananassa HOM05D002182 ORTHO05D008382 3.7e-11 72.0 87 40.2
FAN17G1163 Fragaria x ananassa HOM05D002182 ORTHO05D008382 4.8e-11 71.6 87 40.2
Ca_16436_v3 Cicer arietinum L. HOM05D002182 ORTHO05D008382 8.2e-11 70.9 87 39.1
GSVIVG01031636001 Vitis vinifera HOM05D002182 ORTHO05D008382 8.2e-11 70.9 86 40.7
BcaC01g05921 Brassica carinata HOM05D002182 ORTHO05D008382 1.4e-10 70.1 87 40.2
BraA03t11062Z Brassica rapa HOM05D002182 ORTHO05D008382 1.4e-10 70.1 87 40.2
BcaB01g03999 Brassica carinata HOM05D002182 ORTHO05D008382 1.8e-10 69.7 87 40.2
A03p18020 Brassica napus HOM05D002182 ORTHO05D008382 1.8e-10 69.7 87 40.2
Glyma.11G253100 Glycine max HOM05D002182 ORTHO05D008382 1.8e-10 69.7 88 37.5
C03p21060 Brassica napus HOM05D002182 ORTHO05D008382 2.4e-10 69.3 87 40.2
BolC3t14488H Brassica oleracea HOM05D002182 ORTHO05D008382 2.4e-10 69.3 87 40.2
AT2G32000 Arabidopsis thaliana HOM05D002182 ORTHO05D008382 3.1e-10 68.9 88 39.8
Psat5g097840 Pisum sativum HOM05D002182 ORTHO05D008382 3.1e-10 68.9 87 40.2
THA.LOC104800954 Tarenaya hassleriana HOM05D002182 ORTHO05D008382 3.1e-10 68.9 87 41.4
VMungo1383G0373 Vigna mungo HOM05D002182 ORTHO05D008382 3.1e-10 68.9 88 37.5
AL4G27360 Arabidopsis lyrata HOM05D002182 ORTHO05D008382 4.1e-10 68.6 87 40.2
CARHR125770 Cardamine hirsuta HOM05D002182 ORTHO05D008382 4.1e-10 68.6 87 37.9
Thhalv10016222m.g Eutrema salsugineum HOM05D002182 ORTHO05D008382 4.1e-10 68.6 87 40.2
Migut.N00431 Erythranthe guttata HOM05D002182 ORTHO05D008382 5.3e-10 68.2 89 40.4
Pp3c8_22620 Physcomitrium patens HOM05D002182 ORTHO05D008382 5.3e-10 68.2 87 40.2
RcHm_v2.0_Chr4g0412031 Rosa chinensis HOM05D002182 ORTHO05D008382 5.3e-10 68.2 87 39.1
arahy.Tifrunner.gnm1.ann1.RWIY1E Arachis hypogaea HOM05D002182 ORTHO05D008382 6.9e-10 67.8 84 39.3
Cpa.g.sc157.4 Carica papaya HOM05D002182 ORTHO05D008382 6.9e-10 67.8 83 39.8
Sc19g0007480 Simmondsia chinensis HOM05D002182 ORTHO05D008382 6.9e-10 67.8 89 40.4
CANSAT78G1786 Cannabis sativa HOM05D002182 ORTHO05D008382 9.1e-10 67.4 88 40.9
COL.COLO4_35972 Corchorus olitorius HOM05D002182 ORTHO05D008382 9.1e-10 67.4 115 33.9
Medtr3g084800 Medicago truncatula HOM05D002182 ORTHO05D008382 9.1e-10 67.4 88 36.4
SGA_v2.0_scaffold128G34129 Striga asiatica HOM05D002182 ORTHO05D008382 1.2e-09 67.0 89 42.7
AagrBONN_evm.TU.Sc2ySwM_228.2256 Anthoceros agrestis HOM05D002182 ORTHO05D008382 1.5e-09 66.6 86 41.9
MSTRG.420 Avicennia marina HOM05D002182 ORTHO05D008382 1.5e-09 66.6 89 40.4
PSO063G4176 Papaver somniferum HOM05D002182 ORTHO05D008382 1.5e-09 66.6 87 42.5
Oeu034295.1 Olea europaea HOM05D002182 ORTHO05D008382 2.0e-09 66.2 89 40.4
Gohir.A10G131800 Gossypium hirsutum HOM05D002182 ORTHO05D008382 2.6e-09 65.9 87 37.9
Lalb_Chr23g0278251 Lupinus albus HOM05D002182 ORTHO05D008382 2.6e-09 65.9 88 35.2
MD04G1023600 Malus domestica HOM05D002182 ORTHO05D008382 3.4e-09 65.5 87 37.9
Potri.014G148800 Populus trichocarpa HOM05D002182 ORTHO05D008382 3.4e-09 65.5 87 36.8
Haze_11692 Corylus avellana HOM05D002182 ORTHO05D008382 4.5e-09 65.1 87 39.1
Gorai.011G150100 Gossypium raimondii HOM05D002182 ORTHO05D008382 4.5e-09 65.1 87 36.8
TPR.G18108 Trifolium pratense HOM05D002182 ORTHO05D008382 4.5e-09 65.1 88 36.4
Ah.04g149650 Amaranthus hybridus HOM05D002182 ORTHO05D008382 1.0e-08 63.9 89 37.1
CiPaw.01G112100 Carya illinoinensis HOM05D002182 ORTHO05D008382 1.0e-08 63.9 87 40.2
ECA238G0923 Erigeron canadensis HOM05D002182 ORTHO05D008382 1.0e-08 63.9 89 39.3
CDE05G0942 Ceratophyllum demersum HOM05D002182 ORTHO05D008382 1.3e-08 63.5 117 36.8
Ciclev10005848m.g Citrus clementina HOM05D002182 ORTHO05D008382 1.3e-08 63.5 88 34.1
Manes.01G002901 Manihot esculenta HOM05D002182 ORTHO05D008382 1.3e-08 63.5 86 40.7
Sopen09g035820 Solanum pennellii HOM05D002182 ORTHO05D008382 1.3e-08 63.5 89 38.2
Mapoly0014s0219 Marchantia polymorpha HOM05D002182 ORTHO05D008382 1.7e-08 63.2 86 37.2
MCO11G923 Micromonas commoda HOM05D002182 ORTHO05D008382 1.7e-08 63.2 86 36.0
CsaV3_3G015890 Cucumis sativus L. HOM05D002182 ORTHO05D008382 3.8e-08 62.0 86 37.2
Os09g0500600 Oryza sativa ssp. japonica HOM05D002182 ORTHO05D008382 3.8e-08 62.0 84 40.5
ATR0686G228 Amborella trichopoda HOM05D002182 ORTHO05D008382 5.0e-08 61.6 86 37.2
SEGI_13382 Sequoiadendron giganteum HOM05D002182 ORTHO05D008382 5.0e-08 61.6 97 37.1
TAR365G1258 Trochodendron aralioides HOM05D002182 ORTHO05D008382 5.0e-08 61.6 89 40.4
Thecc.04G190100 Theobroma cacao HOM05D002182 ORTHO05D008382 6.5e-08 61.2 87 35.6
PGR142G0868 Punica granatum HOM05D002182 ORTHO05D008382 8.5e-08 60.8 87 39.1
Hund19029 Selenicereus undatus HOM05D002182 ORTHO05D008382 1.1e-07 60.5 89 37.1
ClCG05G007130 Citrullus lanatus HOM05D002182 ORTHO05D008382 1.4e-07 60.1 91 36.3
Solyc09g097880.4 Solanum lycopersicum HOM05D002182 ORTHO05D008382 1.4e-07 60.1 89 36.0
Cfa022087 Carpinus fangiana HOM05D002182 ORTHO05D004671 1.9e-07 59.7 51 47.1
Actinidia35818 Actinidia chinensis HOM05D002182 ORTHO05D008382 2.5e-07 59.3 89 41.6
Aqoxy2G03986 Aquilegia oxysepala HOM05D002182 ORTHO05D008382 2.5e-07 59.3 87 39.1
Sed0005840 Sechium edule HOM05D002182 ORTHO05D008382 3.2e-07 58.9 89 34.8
CSS0003059 Camellia sinensis var. sinensis HOM05D002182 ORTHO05D008382 4.2e-07 58.5 83 37.3
Nn1g08084 Nelumbo nucifera HOM05D002182 ORTHO05D008382 5.5e-07 58.2 83 36.1


User provided reference genes

Program Settings