Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_010183 Vanilla planifolia HOM05D003203 ORTHO05D003526 0.0e+00 1352.0 680 100.0
Manes.11G141000 Manihot esculenta HOM05D003203 ORTHO05D003526 9.5e-239 830.5 684 65.6
Dinv32789 Davidia involucrata HOM05D003203 ORTHO05D003526 1.0e-237 827.0 604 70.4
COL.COLO4_25248 Corchorus olitorius HOM05D003203 ORTHO05D003526 4.0e-237 825.1 567 73.2
Thecc.09G260300 Theobroma cacao HOM05D003203 ORTHO05D003526 4.4e-236 821.6 572 72.2
CiPaw.13G106900 Carya illinoinensis HOM05D003203 ORTHO05D003526 1.3e-235 820.1 626 67.7
arahy.Tifrunner.gnm1.ann1.DWB64P Arachis hypogaea HOM05D003203 ORTHO05D003526 3.7e-235 818.5 658 66.0
Ciclev10027702m.g Citrus clementina HOM05D003203 ORTHO05D003526 3.7e-235 818.5 654 66.7
TAR633G1300 Trochodendron aralioides HOM05D003203 ORTHO05D003526 3.7e-235 818.5 630 68.7
FvH4_3g33360 Fragaria vesca HOM05D003203 ORTHO05D003526 6.3e-235 817.8 684 62.9
QL01p037166 Quercus lobata HOM05D003203 ORTHO05D003526 8.3e-235 817.4 521 77.2
Lj3g0012673 Lotus japonicus HOM05D003203 ORTHO05D003526 1.4e-234 816.6 696 61.9
TWI31G0332 Tripterygium wilfordii HOM05D003203 ORTHO05D003526 4.1e-234 815.1 703 61.6
Sopen11g030070 Solanum pennellii HOM05D003203 ORTHO05D003526 9.2e-234 813.9 683 64.4
CSS0047004 Camellia sinensis var. sinensis HOM05D003203 ORTHO05D003526 2.0e-233 812.8 672 65.2
Glyma.11G152960 Glycine max HOM05D003203 ORTHO05D003526 2.0e-233 812.8 681 63.9
arahy.Tifrunner.gnm1.ann1.GJ7521 Arachis hypogaea HOM05D003203 ORTHO05D003526 1.3e-232 810.1 661 64.4
Lj3g0020808 Lotus japonicus HOM05D003203 ORTHO05D003526 2.3e-232 809.3 620 66.9
Solyc11g072430.3 Solanum lycopersicum HOM05D003203 ORTHO05D003526 2.3e-232 809.3 673 64.8
TAR636G0568 Trochodendron aralioides HOM05D003203 ORTHO05D003526 2.9e-232 808.9 651 65.9
ATR1159G092 Amborella trichopoda HOM05D003203 ORTHO05D003526 3.8e-232 808.5 605 68.6
CANSAT54G1869 Cannabis sativa HOM05D003203 ORTHO05D003526 3.8e-232 808.5 686 62.7
MELO3C005030.2 Cucumis melo HOM05D003203 ORTHO05D003526 3.8e-232 808.5 693 63.5
Nn2g10680 Nelumbo nucifera HOM05D003203 ORTHO05D003526 4.3e-231 805.1 630 66.5
Prupe.6G094700 Prunus persica HOM05D003203 ORTHO05D003526 7.3e-231 804.3 694 62.0
RcHm_v2.0_Chr5g0060751 Rosa chinensis HOM05D003203 ORTHO05D003526 9.5e-231 803.9 691 62.2
Aqoxy4G03208 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 3.6e-230 802.0 658 63.2
CsaV3_1G013020 Cucumis sativus L. HOM05D003203 ORTHO05D003526 4.7e-230 801.6 678 64.6
Sed0015984 Sechium edule HOM05D003203 ORTHO05D003526 6.1e-230 801.2 685 63.2
Medtr4g060795 Medicago truncatula HOM05D003203 ORTHO05D003526 8.0e-230 800.8 628 65.0
Sc15g0001570 Simmondsia chinensis HOM05D003203 ORTHO05D003526 1.8e-229 799.7 652 65.0
FAN11G3892 Fragaria x ananassa HOM05D003203 ORTHO05D003526 5.2e-229 798.1 682 62.0
GSVIVG01025133001 Vitis vinifera HOM05D003203 ORTHO05D003526 5.2e-229 798.1 508 77.4
MD11G1129800 Malus domestica HOM05D003203 ORTHO05D003526 6.8e-229 797.7 699 60.9
PGR102G2647 Punica granatum HOM05D003203 ORTHO05D003526 3.4e-228 795.4 701 61.6
Gorai.009G078900 Gossypium raimondii HOM05D003203 ORTHO05D003526 9.8e-228 793.9 616 66.9
Zm00001eb302520 Zea mays HOM05D003203 ORTHO05D003526 9.8e-228 793.9 622 65.9
Eucgr.B02467 Eucalyptus grandis HOM05D003203 ORTHO05D003526 1.3e-227 793.5 630 64.9
FAN16G3448 Fragaria x ananassa HOM05D003203 ORTHO05D003526 1.7e-227 793.1 681 62.0
ClCG03G002340 Citrullus lanatus HOM05D003203 ORTHO05D003526 2.9e-227 792.3 735 59.6
TPR.G14912 Trifolium pratense HOM05D003203 ORTHO05D003526 3.7e-227 792.0 685 61.6
Lalb_Chr03g0027111 Lupinus albus HOM05D003203 ORTHO05D003526 4.9e-227 791.6 643 64.4
Sabra16G0090500 Salix brachista HOM05D003203 ORTHO05D003526 4.9e-227 791.6 582 68.9
Phvul.011G072500 Phaseolus vulgaris HOM05D003203 ORTHO05D003526 1.1e-226 790.4 661 63.2
Ca_19241_v3 Cicer arietinum L. HOM05D003203 ORTHO05D003526 2.4e-226 789.3 623 65.2
Cfa011365 Carpinus fangiana HOM05D003203 ORTHO05D003526 3.2e-226 788.9 690 62.3
AUR62006513 Chenopodium quinoa HOM05D003203 ORTHO05D003526 3.2e-226 788.9 623 66.8
Psat7g223280 Pisum sativum HOM05D003203 ORTHO05D003526 5.9e-225 784.6 635 63.9
MSTRG.21144 Avicennia marina HOM05D003203 ORTHO05D003526 1.9e-223 779.6 683 61.5
VMungo1127G1096 Vigna mungo HOM05D003203 ORTHO05D003526 3.3e-223 778.9 683 61.9
THA.LOC104815752 Tarenaya hassleriana HOM05D003203 ORTHO05D003526 4.3e-223 778.5 575 69.2
CAN.G352.40 Capsicum annuum HOM05D003203 ORTHO05D003526 5.6e-223 778.1 619 65.6
HanXRQChr13g0401461 Helianthus annuus HOM05D003203 ORTHO05D003526 3.6e-222 775.4 666 63.1
Cpa.g.sc139.65 Carica papaya HOM05D003203 ORTHO05D003526 2.0e-220 769.6 636 63.4
Rhsim01G0220300 Rhododendron simsii HOM05D003203 ORTHO05D003526 4.4e-220 768.5 716 58.1
Migut.D02182 Erythranthe guttata HOM05D003203 ORTHO05D003526 7.5e-220 767.7 677 63.2
Cc01_g11550 Coffea canephora HOM05D003203 ORTHO05D003526 1.7e-219 766.5 685 61.0
PSO339G5999 Papaver somniferum HOM05D003203 ORTHO05D003526 3.7e-219 765.4 727 58.6
Os07g0191700 Oryza sativa ssp. japonica HOM05D003203 ORTHO05D003526 4.1e-218 761.9 551 69.0
DCAR_006042 Daucus carota HOM05D003203 ORTHO05D003526 1.2e-217 760.4 619 62.4
Lj1C185T11 Lonicera japonica HOM05D003203 ORTHO05D003526 3.5e-217 758.8 633 63.2
SHI27628 Sapria himalayana HOM05D003203 ORTHO05D003526 7.8e-217 757.7 618 66.3
CDE07G0291 Ceratophyllum demersum HOM05D003203 ORTHO05D003526 1.7e-216 756.5 618 62.8
Gohir.D05G077500 Gossypium hirsutum HOM05D003203 ORTHO05D003526 3.0e-216 755.7 617 64.5
Lsat_1_v5_gn_6_26241 Lactuca sativa HOM05D003203 ORTHO05D003526 5.0e-216 755.0 681 59.5
FvH4_4g02320 Fragaria vesca HOM05D003203 ORTHO05D003526 8.6e-216 754.2 493 73.8
Lj1A185G36 Lonicera japonica HOM05D003203 ORTHO05D003526 1.5e-215 753.4 627 62.2
RcHm_v2.0_Chr4g0389641 Rosa chinensis HOM05D003203 ORTHO05D003526 1.9e-215 753.1 497 72.8
BcaC07g42504 Brassica carinata HOM05D003203 ORTHO05D003526 2.5e-215 752.7 557 68.4
BcaC07g41968 Brassica carinata HOM05D003203 ORTHO05D003526 1.2e-214 750.4 510 73.3
A09p66110 Brassica napus HOM05D003203 ORTHO05D003526 1.2e-214 750.4 544 69.7
C08p50260 Brassica napus HOM05D003203 ORTHO05D003526 1.2e-214 750.4 510 73.3
BolC8t52555H Brassica oleracea HOM05D003203 ORTHO05D003526 1.2e-214 750.4 510 73.3
PSO063G5461 Papaver somniferum HOM05D003203 ORTHO05D003526 1.2e-214 750.4 589 66.0
BraA09t41949Z Brassica rapa HOM05D003203 ORTHO05D003526 1.6e-214 750.0 544 69.7
Duzib168G0563 Durio zibethinus HOM05D003203 ORTHO05D003526 2.8e-214 749.2 568 68.3
Thhalv10006605m.g Eutrema salsugineum HOM05D003203 ORTHO05D003526 4.7e-214 748.4 544 69.1
Oeu005910.3 Olea europaea HOM05D003203 ORTHO05D003526 4.7e-214 748.4 565 67.8
AT1G07910 Arabidopsis thaliana HOM05D003203 ORTHO05D003526 1.1e-213 747.3 545 68.6
FAN12G0401 Fragaria x ananassa HOM05D003203 ORTHO05D003526 1.1e-213 747.3 493 73.2
PSO765G0203 Papaver somniferum HOM05D003203 ORTHO05D003526 1.8e-213 746.5 646 61.3
AUR62025015 Chenopodium quinoa HOM05D003203 ORTHO05D003526 3.1e-213 745.7 702 58.5
SalBow3G4618 Salvia bowleyana HOM05D003203 ORTHO05D003526 8.9e-213 744.2 570 67.2
Migut.N02091 Erythranthe guttata HOM05D003203 ORTHO05D003526 5.8e-212 741.5 497 74.8
Nitab4.5_0002129g0110 Nicotiana tabacum HOM05D003203 ORTHO05D003526 5.8e-212 741.5 688 58.9
Aa31sc36G120 Aethionema arabicum HOM05D003203 ORTHO05D003526 1.3e-211 740.3 647 60.9
Carub.0011s0009 Capsella rubella HOM05D003203 ORTHO05D003526 3.7e-211 738.8 546 67.8
AL6G53580 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 1.2e-209 733.8 507 70.8
Carub.0001s0725 Capsella rubella HOM05D003203 ORTHO05D003526 1.2e-209 733.8 692 57.8
Nitab4.5_0001802g0140 Nicotiana tabacum HOM05D003203 ORTHO05D003526 1.5e-207 726.9 680 59.0
Gohir.A05G074700 Gossypium hirsutum HOM05D003203 ORTHO05D003526 4.3e-207 725.3 461 76.4
A06p05020 Brassica napus HOM05D003203 ORTHO05D003526 2.8e-206 722.6 497 70.8
BraA06t23708Z Brassica rapa HOM05D003203 ORTHO05D003526 2.8e-206 722.6 497 70.8
BcaC05g24708 Brassica carinata HOM05D003203 ORTHO05D003526 4.7e-206 721.8 497 71.2
EL10Ac9g22449 Beta vulgaris HOM05D003203 ORTHO05D003526 2.0e-204 716.5 506 70.8
BcaB02g06702 Brassica carinata HOM05D003203 ORTHO05D003526 2.0e-204 716.5 497 70.4
unitig_736.g22420 Utricularia gibba HOM05D003203 ORTHO05D003526 9.9e-204 714.1 633 61.9
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 2.2e-203 713.0 497 70.4
C05p05960 Brassica napus HOM05D003203 ORTHO05D003526 1.1e-202 710.7 497 70.2
SEGI_33151 Sequoiadendron giganteum HOM05D003203 ORTHO05D003526 1.6e-201 706.8 500 69.6
ECA233G2891 Erigeron canadensis HOM05D003203 ORTHO05D003526 2.1e-201 706.4 625 61.0
SGA_v2.0_scaffold97G29171 Striga asiatica HOM05D003203 ORTHO05D003526 1.0e-200 704.1 680 58.7
AL1G18200 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 3.0e-200 702.6 542 65.9
Lj2C1036G7 Lonicera japonica HOM05D003203 ORTHO05D003526 3.9e-192 675.6 607 61.3
SalBow6G0781 Salvia bowleyana HOM05D003203 ORTHO05D003526 7.3e-191 671.4 565 62.8
Haze_23916 Corylus avellana HOM05D003203 ORTHO05D003526 6.4e-187 658.3 648 57.4
Potri.016G083100 Populus trichocarpa HOM05D003203 ORTHO05D003526 2.5e-183 646.4 410 77.6
FAN22G0069 Fragaria x ananassa HOM05D003203 ORTHO05D003526 5.6e-183 645.2 494 65.6
Atru.chr3.3693 Acer truncatum HOM05D003203 ORTHO05D003526 1.1e-175 620.9 419 73.5
Nn2g13009 Nelumbo nucifera HOM05D003203 ORTHO05D003526 3.8e-171 605.9 381 77.2
SpUn0400_0010 Schrenkiella parvula HOM05D003203 ORTHO05D003526 3.2e-170 602.8 627 54.7
Peaxi162Scf00389g00932 Petunia axillaris HOM05D003203 ORTHO05D003526 2.7e-169 599.7 390 74.6
FAN17G1981 Fragaria x ananassa HOM05D003203 ORTHO05D003526 3.9e-168 595.9 492 61.2
Aqoxy3G02869 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 6.9e-165 585.1 413 69.2
vmacro14071 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 4.1e-157 559.3 409 67.5
Hund28195 Selenicereus undatus HOM05D003203 ORTHO05D003526 5.5e-154 548.9 420 65.0
Hund28197 Selenicereus undatus HOM05D003203 ORTHO05D003526 5.5e-154 548.9 420 65.0
Mapoly0005s0012 Marchantia polymorpha HOM05D003203 ORTHO05D003526 3.1e-149 533.1 555 51.4
SMO223G0015 Selaginella moellendorffii HOM05D003203 ORTHO05D003526 1.1e-146 524.6 486 56.4
Pp3c27_2850 Physcomitrium patens HOM05D003203 ORTHO05D003526 2.7e-145 520.0 495 53.5
AagrBONN_evm.TU.Sc2ySwM_362.2654 Anthoceros agrestis HOM05D003203 ORTHO05D003526 3.9e-144 516.2 493 54.0
AagrBONN_evm.TU.Sc2ySwM_244.3 Anthoceros agrestis HOM05D003203 ORTHO05D003526 9.7e-143 511.5 494 53.4
AagrBONN_evm.TU.Sc2ySwM_117.4029 Anthoceros agrestis HOM05D003203 ORTHO05D003526 2.2e-142 510.4 494 53.4
AagrBONN_evm.TU.Sc2ySwM_341.1 Anthoceros agrestis HOM05D003203 ORTHO05D003526 3.7e-142 509.6 494 53.2
arahy.Tifrunner.gnm1.ann1.VS5L85 Arachis hypogaea HOM05D003203 ORTHO05D003526 3.7e-142 509.6 652 48.9
AagrBONN_evm.TU.Sc2ySwM_341.2 Anthoceros agrestis HOM05D003203 ORTHO05D003526 1.4e-141 507.7 494 53.2
AagrBONN_evm.TU.Sc2ySwM_117.4033 Anthoceros agrestis HOM05D003203 ORTHO05D003526 5.5e-138 495.7 494 52.6
AagrBONN_evm.TU.Sc2ySwM_117.4034 Anthoceros agrestis HOM05D003203 ORTHO05D003526 4.7e-137 492.7 494 52.4
CBR_g39406 Chara braunii HOM05D003203 ORTHO05D003526 1.1e-130 471.5 485 51.5
MD03G1112400 Malus domestica HOM05D003203 ORTHO05D003526 9.8e-127 458.4 440 59.3
AagrBONN_evm.TU.Sc2ySwM_117.4032 Anthoceros agrestis HOM05D003203 ORTHO05D003526 9.2e-109 398.7 341 58.1
DCAR_024905 Daucus carota HOM05D003203 ORTHO05D003526 3.1e-96 357.1 279 65.6
AL7G46970 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 8.9e-88 328.9 256 62.5
Lsat_1_v5_gn_4_85140 Lactuca sativa HOM05D003203 ORTHO05D003526 9.2e-85 318.9 319 52.7
CARHR007720 Cardamine hirsuta HOM05D003203 ORTHO05D003526 1.8e-80 304.7 234 62.8
AagrBONN_evm.TU.Sc2ySwM_246.1 Anthoceros agrestis HOM05D003203 ORTHO05D003526 2.6e-79 300.8 348 46.3
Nitab4.5_0000848g0100 Nicotiana tabacum HOM05D003203 ORTHO05D003526 8.1e-73 279.3 448 39.3
AagrBONN_evm.TU.Sc2ySwM_245.2 Anthoceros agrestis HOM05D003203 ORTHO05D003526 5.6e-66 256.5 317 44.5
vmacro14465 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 1.1e-61 242.3 182 66.5
Nitab4.5_0004347g0030 Nicotiana tabacum HOM05D003203 ORTHO05D003526 1.4e-56 225.3 195 61.0
vmacro14466 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 6.9e-56 223.0 232 56.0
DCAR_024904 Daucus carota HOM05D003203 ORTHO05D003526 9.0e-56 222.6 139 79.1
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 1.7e-54 218.4 180 60.0
Ah.01g014960 Amaranthus hybridus HOM05D003203 ORTHO05D003526 2.5e-53 214.5 202 61.4
Lj3g0013082 Lotus japonicus HOM05D003203 ORTHO05D003526 2.8e-49 201.1 241 51.0
TPR.G38674 Trifolium pratense HOM05D003203 ORTHO05D003526 1.1e-48 199.1 117 75.2
Gohir.A07G142600 Gossypium hirsutum HOM05D003203 ORTHO05D003526 9.0e-48 196.1 255 48.6
RcHm_v2.0_Chr1g0326771 Rosa chinensis HOM05D003203 ORTHO05D003526 9.0e-48 196.1 133 68.4
Dinv24673 Davidia involucrata HOM05D003203 ORTHO05D003526 2.3e-43 181.4 121 75.2
vmacro14070 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 1.6e-36 158.7 289 39.8
Peaxi162Scf00389g00943 Petunia axillaris HOM05D003203 ORTHO05D003526 1.1e-34 152.5 200 50.5
Atru.chr3.3692 Acer truncatum HOM05D003203 ORTHO05D003526 7.7e-31 139.8 101 66.3
Gohir.A03G109301 Gossypium hirsutum HOM05D003203 ORTHO05D003526 2.5e-29 134.8 100 63.0
Gohir.A08G106700 Gossypium hirsutum HOM05D003203 ORTHO05D003526 2.1e-28 131.7 100 62.0
QL11p006401 Quercus lobata HOM05D003203 ORTHO05D003526 8.8e-27 126.3 84 73.8
QL11p006907 Quercus lobata HOM05D003203 ORTHO05D003526 8.8e-27 126.3 82 75.6
QL11p006896 Quercus lobata HOM05D003203 ORTHO05D003526 5.7e-26 123.6 81 74.1
vmacro14464 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 1.6e-23 115.5 78 73.1
TPR.G38645 Trifolium pratense HOM05D003203 ORTHO05D003526 2.0e-23 115.2 89 60.7
AagrBONN_evm.TU.Sc2ySwM_342.1 Anthoceros agrestis HOM05D003203 ORTHO05D003526 9.4e-21 106.3 127 44.9
Lsat_1_v5_gn_1_45160 Lactuca sativa HOM05D003203 ORTHO05D003526 2.1e-20 105.1 160 43.1
Aqoxy3G02870 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 1.7e-17 95.5 51 86.3
Thhalv10023078m.g Eutrema salsugineum HOM05D003203 ORTHO05D003526 1.7e-17 95.5 117 45.3
RcHm_v2.0_Chr3g0490601 Rosa chinensis HOM05D003203 ORTHO05D003526 4.5e-15 87.4 85 55.3
Cre07.g352800 Chlamydomonas reinhardtii HOM05D003203 ORTHO05D003526 5.9e-15 87.0 249 28.1
Lsat_1_v5_gn_8_71460 Lactuca sativa HOM05D006073 ORTHO05D007354 1.3e-14 85.9 77 57.1
TPR.G22000 Trifolium pratense HOM05D003203 ORTHO05D003526 1.7e-14 85.5 61 63.9
Zm00001eb134270 Zea mays HOM05D003203 ORTHO05D003526 3.8e-14 84.3 61 72.1
COL.COLO4_02731 Corchorus olitorius HOM05D003203 ORTHO05D003526 5.0e-14 84.0 56 64.3
TPR.G2853 Trifolium pratense HOM05D003203 ORTHO05D003526 7.2e-13 80.1 50 80.0
Lsat_1_v5_gn_2_120 Lactuca sativa HOM05D003203 ORTHO05D003526 9.4e-13 79.7 220 29.1
CAN.G553.12 Capsicum annuum HOM05D003203 ORTHO05D003526 2.1e-12 78.6 45 82.2
CSS0004531 Camellia sinensis var. sinensis HOM05D003203 ORTHO05D003526 4.7e-12 77.4 90 47.8
Lsat_1_v5_gn_9_33601 Lactuca sativa HOM05D003172 ORTHO05D003526 9.8e-10 69.7 187 30.5
Glyma.11G172800 Glycine max HOM05D003203 ORTHO05D003526 3.7e-09 67.8 143 32.9
Lsat_1_v5_gn_6_107780 Lactuca sativa HOM05D004503 ORTHO05D003526 7.0e-08 63.5 61 52.5
Nitab4.5_0010520g0030 Nicotiana tabacum HOM05D003203 ORTHO05D003526 9.1e-08 63.2 44 63.6
Lsat_1_v5_gn_8_153961 Lactuca sativa HOM05D003203 ORTHO05D003526 2.7e-07 61.6 229 27.9
TPR.G33733 Trifolium pratense HOM05D003203 ORTHO05D003526 1.0e-06 59.7 32 78.1
MELO3C000359.2 Cucumis melo HOM05D003203 ORTHO05D003526 2.9e-06 58.2 88 36.4


User provided reference genes

Program Settings