Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01027609001 Vitis vinifera HOM05D004484 ORTHO05D005370 0.0e+00 1367.8 691 100.0
GSVIVG01027610001 Vitis vinifera HOM05D004484 ORTHO05D005370 1.5e-292 1009.2 661 77.6
Dinv32377 Davidia involucrata HOM05D004484 ORTHO05D005370 1.3e-267 926.4 661 71.0
QL08p052472 Quercus lobata HOM05D004484 ORTHO05D005370 5.8e-260 901.0 656 68.8
CiPaw.01G262000 Carya illinoinensis HOM05D004484 ORTHO05D005370 1.1e-255 886.7 659 67.2
Hma1.2p1_0086F.1_g044870 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.1e-255 886.7 660 68.0
Prupe.2G145600 Prunus persica HOM05D004484 ORTHO05D005370 2.8e-254 882.1 656 67.4
Atru.chr5.309 Acer truncatum HOM05D004484 ORTHO05D005370 3.6e-254 881.7 660 67.0
MD07G1121000 Malus domestica HOM05D004484 ORTHO05D005370 6.2e-254 880.9 659 68.0
TWI23G0227 Tripterygium wilfordii HOM05D004484 ORTHO05D005370 9.9e-252 873.6 656 67.5
Lj7A528T57 Lonicera japonica HOM05D004484 ORTHO05D005370 1.3e-251 873.2 668 66.9
Cc02_g36700 Coffea canephora HOM05D004484 ORTHO05D005370 1.7e-251 872.8 656 67.4
Potri.014G069700 Populus trichocarpa HOM05D004484 ORTHO05D005370 2.1e-249 865.9 656 66.2
Haze_16815 Corylus avellana HOM05D004484 ORTHO05D005370 2.7e-249 865.5 716 62.3
Nn1g01233 Nelumbo nucifera HOM05D004484 ORTHO05D005370 6.6e-248 860.9 657 65.9
Manes.01G265900 Manihot esculenta HOM05D004484 ORTHO05D005370 2.5e-247 859.0 661 65.8
TAR629G2468 Trochodendron aralioides HOM05D004484 ORTHO05D005370 2.5e-247 859.0 641 68.0
MSTRG.20748 Avicennia marina HOM05D004484 ORTHO05D005370 6.2e-246 854.4 660 65.0
Eucgr.E01418 Eucalyptus grandis HOM05D004484 ORTHO05D005370 1.1e-245 853.6 656 65.7
Sed0020955 Sechium edule HOM05D004484 ORTHO05D005370 1.1e-245 853.6 658 65.8
Nitab4.5_0000457g0330 Nicotiana tabacum HOM05D004484 ORTHO05D005370 1.4e-245 853.2 658 65.5
Thecc.01G376200 Theobroma cacao HOM05D004484 ORTHO05D005370 2.4e-245 852.4 656 63.4
MELO3C006188.2 Cucumis melo HOM05D004484 ORTHO05D005370 3.1e-245 852.0 654 65.4
ClCG05G002220 Citrullus lanatus HOM05D004484 ORTHO05D005370 1.5e-244 849.7 659 66.0
Aqoxy5G00403 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 2.6e-244 849.0 661 65.5
FvH4_7g11900 Fragaria vesca HOM05D004484 ORTHO05D005370 7.6e-244 847.4 660 65.3
Oeu055487.1 Olea europaea HOM05D004484 ORTHO05D005370 7.6e-244 847.4 660 65.5
FAN01G0628 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.4e-242 842.4 660 64.7
CSS0036976 Camellia sinensis var. sinensis HOM05D004484 ORTHO05D005370 1.6e-241 839.7 659 65.6
CAN.G388.13 Capsicum annuum HOM05D004484 ORTHO05D005370 1.6e-241 839.7 656 64.8
FAN10G1483 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.7e-241 839.0 660 65.0
PSO478G5008 Papaver somniferum HOM05D004484 ORTHO05D005370 7.9e-241 837.4 659 65.4
FAN06G1787 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.0e-240 837.0 660 64.8
Ca_19886_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 1.8e-240 836.3 652 64.6
FAN10G2369 Fragaria x ananassa HOM05D004484 ORTHO05D005370 3.0e-240 835.5 660 64.7
FAN06G3319 Fragaria x ananassa HOM05D004484 ORTHO05D005370 3.9e-240 835.1 660 64.5
Nitab4.5_0005372g0070 Nicotiana tabacum HOM05D004484 ORTHO05D005370 3.9e-240 835.1 685 62.6
Medtr4g023560 Medicago truncatula HOM05D004484 ORTHO05D005370 1.9e-239 832.8 652 64.0
PGSC0003DMG400012761 Solanum tuberosum HOM05D004484 ORTHO05D005370 1.9e-239 832.8 656 64.8
Lalb_Chr13g0291731 Lupinus albus HOM05D004484 ORTHO05D005370 4.3e-239 831.6 660 64.7
Ciclev10019016m.g Citrus clementina HOM05D004484 ORTHO05D005370 5.6e-239 831.2 657 64.5
CsaV3_3G009680 Cucumis sativus L. HOM05D004484 ORTHO05D005370 1.6e-238 829.7 656 64.3
Peaxi162Scf00021g01723 Petunia axillaris HOM05D004484 ORTHO05D005370 4.8e-238 828.2 657 64.7
SGA_v2.0_scaffold153G37012 Striga asiatica HOM05D004484 ORTHO05D005370 1.4e-237 826.6 657 63.6
ECA234G1700 Erigeron canadensis HOM05D004484 ORTHO05D005370 4.0e-237 825.1 660 63.8
HanXRQChr16g0520161 Helianthus annuus HOM05D004484 ORTHO05D005370 4.0e-237 825.1 658 63.8
Psat7g233440 Pisum sativum HOM05D004484 ORTHO05D005370 3.4e-236 822.0 653 62.8
CANSAT56G4533 Cannabis sativa HOM05D004484 ORTHO05D005370 4.5e-236 821.6 661 62.3
Lj3g0013484 Lotus japonicus HOM05D004484 ORTHO05D005370 4.5e-236 821.6 653 63.7
EL10Ac1g00900 Beta vulgaris HOM05D004484 ORTHO05D005370 7.6e-236 820.8 679 60.8
Ca_27059_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 7.6e-236 820.8 652 63.7
Sabra14G0049400 Salix brachista HOM05D004484 ORTHO05D005370 7.6e-236 820.8 675 62.2
Sc02g0002590 Simmondsia chinensis HOM05D004484 ORTHO05D005370 7.6e-236 820.8 642 64.8
Migut.B01635 Erythranthe guttata HOM05D004484 ORTHO05D005370 9.9e-236 820.5 658 63.5
Cpa.g.sc18.115 Carica papaya HOM05D004484 ORTHO05D005370 3.8e-235 818.5 661 62.8
Lalb_Chr12g0208261 Lupinus albus HOM05D004484 ORTHO05D005370 3.8e-235 818.5 660 63.5
vmacro13399 Vaccinium macrocarpon HOM05D004484 ORTHO05D005370 4.9e-235 818.1 657 63.3
MBI12_g10758_MAGBIO Magnolia biondii HOM05D004484 ORTHO05D005370 1.4e-234 816.6 686 61.4
Solyc01g091350.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 1.9e-234 816.2 656 63.1
Glyma.05G125700 Glycine max HOM05D004484 ORTHO05D005370 5.5e-234 814.7 659 63.4
Sopen01g037090 Solanum pennellii HOM05D004484 ORTHO05D005370 5.5e-234 814.7 656 62.8
Lsat_1_v5_gn_4_43240 Lactuca sativa HOM05D004484 ORTHO05D005370 1.6e-233 813.1 656 63.4
CANSAT56G1200 Cannabis sativa HOM05D004484 ORTHO05D005370 7.9e-233 810.8 661 61.7
DCAR_015907 Daucus carota HOM05D004484 ORTHO05D005370 1.3e-232 810.1 657 63.3
arahy.Tifrunner.gnm1.ann1.V1M046 Arachis hypogaea HOM05D004484 ORTHO05D005370 3.9e-232 808.5 655 63.4
arahy.Tifrunner.gnm1.ann1.6K85L9 Arachis hypogaea HOM05D004484 ORTHO05D005370 4.3e-231 805.1 655 63.2
arahy.Tifrunner.gnm1.ann1.HW1IVJ Arachis hypogaea HOM05D004484 ORTHO05D005370 4.3e-231 805.1 655 63.2
arahy.Tifrunner.gnm1.ann1.Q9SWB6 Arachis hypogaea HOM05D004484 ORTHO05D005370 7.4e-231 804.3 655 63.1
PGR042G0667 Punica granatum HOM05D004484 ORTHO05D005370 1.6e-230 803.1 662 61.6
Phvul.002G205800 Phaseolus vulgaris HOM05D004484 ORTHO05D005370 1.8e-229 799.7 656 61.7
AUR62004221 Chenopodium quinoa HOM05D004484 ORTHO05D005370 2.9e-227 792.3 690 60.0
Gorai.007G091100 Gossypium raimondii HOM05D004484 ORTHO05D005370 3.8e-227 792.0 657 60.7
VMungo0251G1206 Vigna mungo HOM05D004484 ORTHO05D005370 4.9e-227 791.6 657 60.6
Gohir.A11G080700 Gossypium hirsutum HOM05D004484 ORTHO05D005370 1.9e-226 789.6 657 60.3
Gohir.D11G085300 Gossypium hirsutum HOM05D004484 ORTHO05D005370 5.5e-226 788.1 657 60.6
Cfa001721 Carpinus fangiana HOM05D004484 ORTHO05D005370 3.0e-224 782.3 588 67.0
Aqoxy3G02138 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 4.8e-222 775.0 657 60.9
Ah.13g073490 Amaranthus hybridus HOM05D004484 ORTHO05D005370 2.7e-217 759.2 683 57.7
FAN03G1897 Fragaria x ananassa HOM05D004484 ORTHO05D005370 5.7e-215 751.5 662 59.7
TPR.G9845 Trifolium pratense HOM05D004484 ORTHO05D005370 7.4e-215 751.1 649 59.9
THA.LOC104817247 Tarenaya hassleriana HOM05D004484 ORTHO05D005370 2.8e-214 749.2 657 58.0
AT1G48050 Arabidopsis thaliana HOM05D004484 ORTHO05D005370 5.0e-211 738.4 660 56.8
SHI13523 Sapria himalayana HOM05D004484 ORTHO05D005370 1.1e-210 737.3 634 59.8
AL1G54570 Arabidopsis lyrata HOM05D004484 ORTHO05D005370 4.2e-210 735.3 660 56.2
BcaB04g17469 Brassica carinata HOM05D004484 ORTHO05D005370 1.2e-209 733.8 661 56.3
Carub.0001s3716 Capsella rubella HOM05D004484 ORTHO05D005370 1.6e-209 733.4 659 56.1
BraSC267t45947Z Brassica rapa HOM05D004484 ORTHO05D005370 4.4e-207 725.3 660 55.5
Sp1g35020 Schrenkiella parvula HOM05D004484 ORTHO05D005370 4.4e-207 725.3 648 55.9
CARHR037700 Cardamine hirsuta HOM05D004484 ORTHO05D005370 3.7e-206 722.2 657 55.4
C08p05620 Brassica napus HOM05D004484 ORTHO05D005370 8.2e-206 721.1 660 55.8
BolC8t47375H Brassica oleracea HOM05D004484 ORTHO05D005370 1.4e-205 720.3 660 55.8
Hund27347 Selenicereus undatus HOM05D004484 ORTHO05D005370 1.2e-204 717.2 609 60.6
AUR62013627 Chenopodium quinoa HOM05D004484 ORTHO05D005370 2.0e-204 716.5 678 56.3
BcaC07g37180 Brassica carinata HOM05D004484 ORTHO05D005370 7.7e-204 714.5 660 55.5
A08p05330 Brassica napus HOM05D004484 ORTHO05D005370 3.9e-200 702.2 640 55.9
Zm00001eb064930 Zea mays HOM05D004484 ORTHO05D005370 2.8e-198 696.0 652 56.4
Potri.002G148200 Populus trichocarpa HOM05D004484 ORTHO05D005370 7.5e-191 671.4 494 68.6
COL.COLO4_07018 Corchorus olitorius HOM05D004484 ORTHO05D005370 1.3e-182 644.0 522 62.1
arahy.Tifrunner.gnm1.ann1.5WGS6V Arachis hypogaea HOM05D004484 ORTHO05D005370 4.8e-182 642.1 632 54.7
arahy.Tifrunner.gnm1.ann1.03ZR4A Arachis hypogaea HOM05D004484 ORTHO05D005370 6.3e-182 641.7 674 52.1
HPP92_027818 Vanilla planifolia HOM05D004484 ORTHO05D005370 1.1e-181 641.0 667 53.1
Hma1.2p1_0086F.1_g044880 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 2.3e-179 633.3 456 69.3
Lj9C569T11 Lonicera japonica HOM05D004484 ORTHO05D005370 4.5e-172 609.0 468 66.2
arahy.Tifrunner.gnm1.ann1.5492A7 Arachis hypogaea HOM05D004484 ORTHO05D005370 7.8e-172 608.2 639 52.4
unitig_749.g13780 Utricularia gibba HOM05D004484 ORTHO05D005370 2.3e-171 606.7 564 55.7
arahy.Tifrunner.gnm1.ann1.T9R8PC Arachis hypogaea HOM05D004484 ORTHO05D005370 4.4e-167 592.4 657 49.9
COL.COLO4_12548 Corchorus olitorius HOM05D004484 ORTHO05D005370 9.8e-167 591.3 679 47.0
Aa31LG10G5650 Aethionema arabicum HOM05D004484 ORTHO05D005370 1.6e-164 583.9 588 53.7
Thhalv10011351m.g Eutrema salsugineum HOM05D004484 ORTHO05D005370 1.7e-155 553.9 636 47.8
ATR0049G077 Amborella trichopoda HOM05D004484 ORTHO05D005370 9.5e-154 548.1 430 64.0
SMO367G0514 Selaginella moellendorffii HOM05D004484 ORTHO05D005370 3.4e-151 539.7 671 43.8
Pp3c22_11100 Physcomitrium patens HOM05D004484 ORTHO05D005370 7.5e-151 538.5 662 44.4
CDE04G3156 Ceratophyllum demersum HOM05D004484 ORTHO05D005370 8.3e-150 535.0 663 45.6
Mapoly0129s0012 Marchantia polymorpha HOM05D004484 ORTHO05D005370 1.0e-139 501.5 619 43.5
PGR119G1536 Punica granatum HOM05D004484 ORTHO05D005370 6.6e-139 498.8 482 55.2
RcHm_v2.0_Chr1g0350581 Rosa chinensis HOM05D004484 ORTHO05D005370 6.6e-131 472.2 349 68.2
AagrBONN_evm.TU.Sc2ySwM_368.3373 Anthoceros agrestis HOM05D004484 ORTHO05D005370 6.9e-120 435.6 661 36.3
CBR_g30081 Chara braunii HOM05D004484 ORTHO05D005370 2.5e-101 374.0 474 42.0
RcHm_v2.0_Chr1g0350571 Rosa chinensis HOM05D004484 ORTHO05D005370 4.2e-101 373.2 301 63.1
SHI38996 Sapria himalayana HOM05D004484 ORTHO05D005370 4.4e-82 310.1 204 72.5
SHI38095 Sapria himalayana HOM05D004484 ORTHO05D005370 3.1e-72 277.3 190 71.1
Hma1.2p1_0701F.1_g205850 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 2.7e-71 274.2 380 44.7
arahy.Tifrunner.gnm1.ann1.47H85H Arachis hypogaea HOM05D004484 ORTHO05D005370 1.1e-53 215.7 342 41.2
Glyma.06G243967 Glycine max HOM05D004484 ORTHO05D005370 4.0e-51 207.2 144 65.3
Glyma.01G142851 Glycine max HOM05D004484 ORTHO05D005370 4.0e-43 180.6 166 56.6
SHI38094 Sapria himalayana HOM05D004484 ORTHO05D005370 4.0e-43 180.6 184 51.6
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 5.2e-43 180.3 390 37.4
SEGI_20047 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 7.0e-40 169.9 222 42.3
Glyma.17G005802 Glycine max HOM05D004484 ORTHO05D005370 4.6e-39 167.2 191 53.4
Hma1.2p1_0170F.1_g075250 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.3e-38 165.6 202 50.5
CAN.G594.7 Capsicum annuum HOM05D004484 ORTHO05D005370 6.8e-35 153.3 105 69.5
QL08p052505 Quercus lobata HOM05D004484 ORTHO05D005370 9.9e-34 149.4 181 47.5
SEGI_29754 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 2.9e-33 147.9 116 63.8
CAN.G205.22 Capsicum annuum HOM05D004484 ORTHO05D005370 8.3e-33 146.4 96 71.9
MCO15G158 Micromonas commoda HOM05D004484 ORTHO05D005370 8.3e-33 146.4 469 29.4
TPR.G22633 Trifolium pratense HOM05D004484 ORTHO05D005370 1.1e-32 146.0 92 72.8
SGA_v2.0_scaffold65G22170 Striga asiatica HOM05D004484 ORTHO05D005370 3.0e-30 137.9 201 40.8
Eucgr.I00725 Eucalyptus grandis HOM05D004484 ORTHO05D005370 6.4e-25 120.2 82 69.5
Solyc01g091430.2 Solanum lycopersicum HOM05D004484 ORTHO05D005370 1.1e-19 102.8 95 56.8
CAN.G279.6 Capsicum annuum HOM05D004484 ORTHO05D005370 1.4e-19 102.4 72 66.7
SHI38995 Sapria himalayana HOM05D004484 ORTHO05D005370 2.4e-19 101.7 99 57.6
CAN.G388.14 Capsicum annuum HOM05D004484 ORTHO05D005370 9.0e-19 99.8 70 62.9
SGA_v2.0_scaffold10G05342 Striga asiatica HOM05D004484 ORTHO05D005370 9.0e-19 99.8 168 38.7
Glyma.06G243934 Glycine max HOM05D004484 ORTHO05D005370 4.4e-18 97.4 81 58.0
Glyma.06G244302 Glycine max HOM05D004484 ORTHO05D005370 1.3e-17 95.9 81 56.8
SGA_v2.0_scaffold172G39032 Striga asiatica HOM05D004484 ORTHO05D005370 1.3e-17 95.9 168 38.1
SGA_v2.0_scaffold29G12247 Striga asiatica HOM05D004484 ORTHO05D005370 7.8e-15 86.7 187 34.8
Os03g0856200 Oryza sativa ssp. japonica HOM05D004484 ORTHO05D005370 6.6e-14 83.6 76 51.3
PRCOL_00002704 Prasinoderma coloniale HOM05D004484 ORTHO05D005370 5.6e-13 80.5 258 28.3
Solyc01g091440.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 5.6e-13 80.5 133 39.8
TPR.G9848 Trifolium pratense HOM05D000164 ORTHO05D000096 3.6e-12 77.8 60 65.0
CAN.G321.48 Capsicum annuum HOM05D001267 ORTHO05D002376 4.0e-11 74.3 80 53.8
Aa31LG10G5660 Aethionema arabicum HOM05D004484 ORTHO05D005370 6.9e-11 73.6 61 54.1
Eucgr.E01421 Eucalyptus grandis HOM05D004484 ORTHO05D005370 5.8e-10 70.5 63 52.4
Eucgr.L02075 Eucalyptus grandis HOM05D004484 ORTHO05D005370 9.9e-10 69.7 63 52.4
AagrBONN_evm.TU.Sc2ySwM_368.3370 Anthoceros agrestis HOM05D004484 ORTHO05D005370 1.6e-07 62.4 112 32.1
Cre10.g423800 Chlamydomonas reinhardtii HOM05D004484 ORTHO05D005370 1.6e-07 62.4 174 29.9


User provided reference genes

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