Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G2787 Fragaria x ananassa HOM05D006129 ORTHO05D007446 0.0e+00 1258.0 624 100.0
FAN15G2181 Fragaria x ananassa HOM05D006129 ORTHO05D007446 0.0e+00 1192.2 606 97.2
FAN27G0179 Fragaria x ananassa HOM05D006129 ORTHO05D007446 0.0e+00 1182.9 624 94.7
FvH4_2g06900 Fragaria vesca HOM05D006129 ORTHO05D007446 0.0e+00 1167.5 604 95.7
FAN24G2628 Fragaria x ananassa HOM05D006129 ORTHO05D007446 0.0e+00 1156.4 604 94.7
RcHm_v2.0_Chr6g0259211 Rosa chinensis HOM05D006129 ORTHO05D007446 0.0e+00 1137.9 624 91.2
MD10G1089000 Malus domestica HOM05D006129 ORTHO05D007446 1.5e-270 936.0 623 74.3
CiPaw.05G055300 Carya illinoinensis HOM05D006129 ORTHO05D007446 3.2e-265 918.3 620 72.3
QL11p038411 Quercus lobata HOM05D006129 ORTHO05D007446 4.1e-265 917.9 619 70.8
GSVIVG01031785001 Vitis vinifera HOM05D006129 ORTHO05D007446 1.1e-262 909.8 620 70.5
Haze_01881 Corylus avellana HOM05D006129 ORTHO05D007446 5.8e-259 897.5 610 70.8
CANSAT25G2181 Cannabis sativa HOM05D006129 ORTHO05D007446 7.5e-259 897.1 620 70.5
Dinv42121 Davidia involucrata HOM05D006129 ORTHO05D007446 9.9e-259 896.7 622 71.2
Cfa005424 Carpinus fangiana HOM05D006129 ORTHO05D007446 1.7e-258 896.0 611 70.2
Prupe.8G116000 Prunus persica HOM05D006129 ORTHO05D007446 1.1e-257 893.3 606 72.6
TWI79G0519 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 2.5e-254 882.1 620 68.5
Duzib248G0151 Durio zibethinus HOM05D006129 ORTHO05D007446 7.3e-254 880.6 620 69.4
TWI31G0609 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 9.5e-254 880.2 620 67.9
Thecc.02G095400 Theobroma cacao HOM05D006129 ORTHO05D007446 1.2e-253 879.8 620 68.2
COL.COLO4_11724 Corchorus olitorius HOM05D006129 ORTHO05D007446 2.4e-252 875.5 624 68.3
Atru.BG.82.p Acer truncatum HOM05D006129 ORTHO05D007446 3.0e-247 858.6 579 68.9
Lj5P206T15 Lonicera japonica HOM05D006129 ORTHO05D007446 5.1e-247 857.8 621 68.4
CSS0025307 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 3.3e-246 855.1 619 68.0
CSS0048591 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 3.3e-246 855.1 619 68.0
Potri.009G106800 Populus trichocarpa HOM05D006129 ORTHO05D007446 4.7e-245 851.3 621 67.0
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 1.4e-244 849.7 610 66.4
Cpa.g.sc62.53 Carica papaya HOM05D006129 ORTHO05D007446 2.4e-244 849.0 622 66.4
Nn4g23272 Nelumbo nucifera HOM05D006129 ORTHO05D007446 2.4e-244 849.0 620 66.8
Ciclev10027854m.g Citrus clementina HOM05D006129 ORTHO05D007446 4.0e-244 848.2 620 66.5
CsaV3_3G028800 Cucumis sativus L. HOM05D006129 ORTHO05D007446 8.4e-242 840.5 616 66.4
Manes.17G094600 Manihot esculenta HOM05D006129 ORTHO05D007446 2.4e-241 839.0 620 66.1
Lalb_Chr10g0095451 Lupinus albus HOM05D006129 ORTHO05D007446 2.1e-240 835.9 609 65.5
MELO3C026699.2 Cucumis melo HOM05D006129 ORTHO05D007446 3.5e-240 835.1 618 66.8
Gorai.002G007000 Gossypium raimondii HOM05D006129 ORTHO05D007446 1.0e-239 833.6 621 65.1
Gohir.D01G006000 Gossypium hirsutum HOM05D006129 ORTHO05D007446 1.3e-239 833.2 621 65.1
Glyma.20G009700 Glycine max HOM05D006129 ORTHO05D007446 8.7e-239 830.5 612 65.4
VMungo0464G0688 Vigna mungo HOM05D006129 ORTHO05D007446 9.6e-238 827.0 579 66.8
Gohir.A01G005900 Gossypium hirsutum HOM05D006129 ORTHO05D007446 2.1e-237 825.9 621 64.7
Eucgr.L01320 Eucalyptus grandis HOM05D006129 ORTHO05D007446 8.1e-237 823.9 622 64.5
Lj2g0010354 Lotus japonicus HOM05D006129 ORTHO05D007446 2.4e-236 822.4 609 65.8
Sed0004701 Sechium edule HOM05D006129 ORTHO05D007446 4.0e-236 821.6 615 63.9
Ca_13480_v3 Cicer arietinum L. HOM05D006129 ORTHO05D007446 5.3e-236 821.2 614 64.7
Glyma.07G178800 Glycine max HOM05D006129 ORTHO05D007446 5.3e-236 821.2 612 64.5
arahy.Tifrunner.gnm1.ann1.769PPM Arachis hypogaea HOM05D006129 ORTHO05D007446 3.8e-234 815.1 611 64.6
PGR042G1055 Punica granatum HOM05D006129 ORTHO05D007446 6.4e-234 814.3 624 63.6
vmacro02172 Vaccinium macrocarpon HOM05D006129 ORTHO05D007446 6.4e-234 814.3 622 64.6
Phvul.002G308800 Phaseolus vulgaris HOM05D006129 ORTHO05D007446 3.5e-232 808.5 610 64.3
Rhsim11G0169300 Rhododendron simsii HOM05D006129 ORTHO05D007446 4.6e-232 808.1 622 64.3
Aqoxy3G03484 Aquilegia oxysepala HOM05D006129 ORTHO05D007446 1.3e-231 806.6 613 65.1
Medtr1g026035 Medicago truncatula HOM05D006129 ORTHO05D007446 1.8e-231 806.2 609 63.4
Dinv23594 Davidia involucrata HOM05D006129 ORTHO05D007446 1.9e-230 802.7 619 64.8
TAR371G0476 Trochodendron aralioides HOM05D006129 ORTHO05D007446 1.1e-228 797.0 544 70.0
DCAR_003623 Daucus carota HOM05D006129 ORTHO05D007446 2.4e-228 795.8 624 62.7
Sc08g0000140 Simmondsia chinensis HOM05D006129 ORTHO05D007446 5.3e-228 794.7 619 62.7
THA.LOC104807348 Tarenaya hassleriana HOM05D006129 ORTHO05D007446 1.2e-227 793.5 613 61.5
TPR.G26422 Trifolium pratense HOM05D006129 ORTHO05D007446 1.5e-227 793.1 609 62.2
CARHR106180 Cardamine hirsuta HOM05D006129 ORTHO05D007446 5.8e-227 791.2 621 61.0
Carub.0003s2972 Capsella rubella HOM05D006129 ORTHO05D007446 1.1e-225 786.9 609 61.2
Thhalv10022548m.g Eutrema salsugineum HOM05D006129 ORTHO05D007446 1.1e-225 786.9 621 60.9
AL3G47590 Arabidopsis lyrata HOM05D006129 ORTHO05D007446 1.0e-223 780.4 603 60.5
AT2G15820 Arabidopsis thaliana HOM05D006129 ORTHO05D007446 6.7e-223 777.7 624 59.8
Sp3g29130 Schrenkiella parvula HOM05D006129 ORTHO05D007446 9.6e-222 773.9 596 61.4
A07p04960 Brassica napus HOM05D006129 ORTHO05D007446 4.0e-220 768.5 593 61.7
Peaxi162Scf00789g00530 Petunia axillaris HOM05D006129 ORTHO05D007446 2.6e-219 765.8 621 60.9
CAN.G644.34 Capsicum annuum HOM05D006129 ORTHO05D007446 3.4e-219 765.4 621 60.9
BraA07t28289Z Brassica rapa HOM05D006129 ORTHO05D007446 3.8e-218 761.9 593 61.2
BcaB03g16332 Brassica carinata HOM05D006129 ORTHO05D007446 4.9e-218 761.5 594 61.4
Nitab4.5_0001453g0090 Nicotiana tabacum HOM05D006129 ORTHO05D007446 1.9e-217 759.6 623 60.0
Oeu057674.1 Olea europaea HOM05D006129 ORTHO05D007446 1.9e-217 759.6 620 60.6
BcaC06g36090 Brassica carinata HOM05D006129 ORTHO05D007446 9.3e-217 757.3 596 60.6
C07p07940 Brassica napus HOM05D006129 ORTHO05D007446 9.3e-217 757.3 596 60.6
BolC7t41212H Brassica oleracea HOM05D006129 ORTHO05D007446 9.3e-217 757.3 596 60.6
TAR629G1168 Trochodendron aralioides HOM05D006129 ORTHO05D007446 9.3e-217 757.3 545 65.5
PGSC0003DMG400026525 Solanum tuberosum HOM05D006129 ORTHO05D007446 3.5e-216 755.4 618 59.1
Solyc11g066850.3 Solanum lycopersicum HOM05D006129 ORTHO05D007446 1.9e-214 749.6 617 59.3
EL10Ac9g21818 Beta vulgaris HOM05D006129 ORTHO05D007446 4.3e-214 748.4 619 57.7
Sopen11g026560 Solanum pennellii HOM05D006129 ORTHO05D007446 9.7e-214 747.3 621 59.3
Nitab4.5_0007303g0010 Nicotiana tabacum HOM05D006129 ORTHO05D007446 1.6e-213 746.5 623 59.6
Medtr0381s0010 Medicago truncatula HOM05D006129 ORTHO05D007446 4.8e-213 745.0 609 59.9
MSTRG.20134 Avicennia marina HOM05D006129 ORTHO05D007446 1.8e-212 743.0 620 59.8
Aa31LG8G13380 Aethionema arabicum HOM05D006129 ORTHO05D007446 2.2e-210 736.1 586 60.1
AUR62011424 Chenopodium quinoa HOM05D006129 ORTHO05D007446 1.4e-209 733.4 594 57.9
Actinidia12976 Actinidia chinensis HOM05D006129 ORTHO05D007446 1.2e-208 730.3 609 60.4
Ah.01g006750 Amaranthus hybridus HOM05D006129 ORTHO05D007446 2.3e-207 726.1 619 57.5
Migut.B00306 Erythranthe guttata HOM05D006129 ORTHO05D007446 1.5e-206 723.4 615 58.4
ECA234G4125 Erigeron canadensis HOM05D006129 ORTHO05D007446 5.7e-206 721.5 617 57.5
HanXRQChr10g0303221 Helianthus annuus HOM05D006129 ORTHO05D007446 6.3e-205 718.0 618 57.6
Lsat_1_v5_gn_5_113460 Lactuca sativa HOM05D006129 ORTHO05D007446 1.4e-204 716.8 613 57.6
ATR0665G475 Amborella trichopoda HOM05D006129 ORTHO05D007446 1.4e-199 700.3 624 55.8
Sabra09G0081600 Salix brachista HOM05D006129 ORTHO05D007446 1.0e-191 674.1 537 63.3
Os02g0702000 Oryza sativa ssp. japonica HOM05D006129 ORTHO05D007446 3.0e-191 672.5 603 53.9
AUR62016636 Chenopodium quinoa HOM05D006129 ORTHO05D007446 2.0e-190 669.8 536 59.3
unitig_744.g24241 Utricularia gibba HOM05D006129 ORTHO05D007446 2.8e-189 666.0 612 52.5
Zm00001eb251880 Zea mays HOM05D006129 ORTHO05D007446 5.3e-188 661.8 626 53.0
HPP92_022045 Vanilla planifolia HOM05D006129 ORTHO05D007446 1.2e-187 660.6 610 53.6
SGA_v2.0_scaffold58G20604 Striga asiatica HOM05D006129 ORTHO05D007446 2.4e-180 636.3 626 51.8
Eucgr.G01504 Eucalyptus grandis HOM05D006129 ORTHO05D007446 1.6e-179 633.6 482 63.1
SEGI_31419 Sequoiadendron giganteum HOM05D006129 ORTHO05D007446 3.0e-154 549.7 607 46.5
Cc02_g18440 Coffea canephora HOM05D006129 ORTHO05D007446 4.0e-143 512.7 466 55.2
Eucgr.L00820 Eucalyptus grandis HOM05D006129 ORTHO05D007446 3.6e-136 489.6 376 64.6
CDE04G1903 Ceratophyllum demersum HOM05D006129 ORTHO05D007446 6.8e-135 485.3 561 45.8
Psat6g001360 Pisum sativum HOM05D006129 ORTHO05D007446 5.3e-127 459.1 609 42.2
Hund00318 Selenicereus undatus HOM05D006129 ORTHO05D007446 6.7e-114 415.6 287 69.0
QL11p038542 Quercus lobata HOM05D006129 ORTHO05D007446 5.8e-110 402.5 305 65.9
TAR371G0992 Trochodendron aralioides HOM05D006129 ORTHO05D007446 3.7e-104 383.3 558 41.8
Atru.chr5.2887 Acer truncatum HOM05D006129 ORTHO05D007446 6.3e-96 355.9 403 48.4
Atru.chr5.2823 Acer truncatum HOM05D006129 ORTHO05D007446 8.8e-82 308.9 403 45.2
Pp3c25_10050 Physcomitrium patens HOM05D006129 ORTHO05D007446 4.8e-72 276.6 642 30.1
TAR371G0058 Trochodendron aralioides HOM05D006129 ORTHO05D007446 1.2e-70 271.9 167 79.0
AagrBONN_evm.TU.Sc2ySwM_344.1734 Anthoceros agrestis HOM05D006129 ORTHO05D007446 1.8e-63 248.1 581 28.7
Atru.chr5.2826 Acer truncatum HOM05D006129 ORTHO05D007446 8.0e-59 232.6 192 63.0
Atru.chr5.2881 Acer truncatum HOM05D006129 ORTHO05D007446 8.3e-56 222.6 171 63.7
SMO356G0628 Selaginella moellendorffii HOM05D006129 ORTHO05D007446 1.6e-51 208.4 626 25.9
Mapoly0036s0055 Marchantia polymorpha HOM05D006129 ORTHO05D007446 1.3e-48 198.7 590 25.1
AagrBONN_evm.TU.Sc2ySwM_344.5085 Anthoceros agrestis HOM05D006129 ORTHO05D007446 4.9e-40 170.2 589 24.3
Atru.chr5.2882 Acer truncatum HOM05D006129 ORTHO05D007446 5.4e-31 140.2 198 39.9
Pp3c16_23700 Physcomitrium patens HOM05D006129 ORTHO05D007446 4.9e-24 117.1 632 23.1
TAR629G1760 Trochodendron aralioides HOM05D006129 ORTHO05D007446 8.4e-16 89.7 52 78.8
CBR_g19584 Chara braunii HOM05D006129 ORTHO05D007446 1.1e-12 79.3 594 18.2
CBR_g8924 Chara braunii HOM05D006129 ORTHO05D007446 2.1e-11 75.1 261 26.1
Sopen10g021030 Solanum pennellii HOM05D007173 ORTHO05D009151 1.5e-09 68.9 342 23.4
PGSC0003DMG401009781 Solanum tuberosum HOM05D007173 ORTHO05D009151 5.8e-09 67.0 342 23.7
CAN.G479.71 Capsicum annuum HOM05D007173 ORTHO05D009151 2.9e-08 64.7 340 23.2
AagrBONN_evm.TU.Sc2ySwM_117.3815__3816 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.4e-07 62.4 357 20.2
CAN.G930.13 Capsicum annuum HOM05D007173 ORTHO05D009151 1.4e-07 62.4 339 22.7
Haze_15114 Corylus avellana HOM05D000891 ORTHO05D000761 1.4e-07 62.4 280 21.1
RcHm_v2.0_Chr6g0298171 Rosa chinensis HOM05D000001 ORTHO05D000003 1.4e-07 62.4 374 23.3
TAR376G0069 Trochodendron aralioides HOM05D000891 ORTHO05D000761 1.9e-07 62.0 227 24.7
Manes.10G001800 Manihot esculenta HOM05D000001 ORTHO05D000003 2.4e-07 61.6 223 23.8
TAR383G0126 Trochodendron aralioides HOM05D000001 ORTHO05D009438 2.4e-07 61.6 185 27.6
MBI01_g21720_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 4.2e-07 60.8 297 24.2
Aa31LG4G18220 Aethionema arabicum HOM05D000424 ORTHO05D000355 5.4e-07 60.5 181 23.8
AagrBONN_evm.TU.Sc2ySwM_362.2108 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.1e-07 60.1 347 20.7
Pp3c2_12230 Physcomitrium patens HOM05D000001 ORTHO05D000003 1.6e-06 58.9 255 22.7
Sc13g0008350 Simmondsia chinensis HOM05D000001 ORTHO05D000003 1.6e-06 58.9 264 22.7
AagrBONN_evm.TU.Sc2ySwM_117.2924__2925 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.1e-06 58.5 269 20.4
AagrBONN_evm.TU.Sc2ySwM_362.2733 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.7e-06 58.2 299 24.1
Eucgr.J00110 Eucalyptus grandis HOM05D000001 ORTHO05D000003 2.7e-06 58.2 381 21.3
Gohir.A08G055001 Gossypium hirsutum HOM05D001779 ORTHO05D001753 2.7e-06 58.2 200 25.5
Oeu022756.1 Olea europaea HOM05D000001 ORTHO05D000003 2.7e-06 58.2 263 23.2
AagrBONN_evm.TU.Sc2ySwM_362.870 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.5e-06 57.8 336 22.6
AagrBONN_evm.TU.Sc2ySwM_368.2160 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.5e-06 57.8 343 21.0
AagrBONN_evm.TU.Sc2ySwM_368.1667 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.6e-06 57.4 360 21.1
Gohir.D08G064500 Gossypium hirsutum HOM05D001779 ORTHO05D001753 4.6e-06 57.4 200 25.0
TAR371G0388 Trochodendron aralioides HOM05D001464 ORTHO05D002836 4.6e-06 57.4 51 56.9
Gorai.004G066800 Gossypium raimondii HOM05D001779 ORTHO05D001753 7.9e-06 56.6 200 25.0


User provided reference genes

Program Settings