Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G1787 Fragaria x ananassa HOM05D004484 ORTHO05D005370 0.0e+00 1486.5 750 100.0
FAN06G3319 Fragaria x ananassa HOM05D004484 ORTHO05D005370 0.0e+00 1477.6 750 99.2
FAN10G1483 Fragaria x ananassa HOM05D004484 ORTHO05D005370 0.0e+00 1466.1 742 99.6
FAN10G2369 Fragaria x ananassa HOM05D004484 ORTHO05D005370 0.0e+00 1424.8 724 99.3
FAN01G0628 Fragaria x ananassa HOM05D004484 ORTHO05D005370 0.0e+00 1394.8 726 97.1
FvH4_7g11900 Fragaria vesca HOM05D004484 ORTHO05D005370 0.0e+00 1352.4 689 99.1
FAN03G1897 Fragaria x ananassa HOM05D004484 ORTHO05D005370 0.0e+00 1232.2 691 91.9
Prupe.2G145600 Prunus persica HOM05D004484 ORTHO05D005370 0.0e+00 1146.3 689 81.6
MD07G1121000 Malus domestica HOM05D004484 ORTHO05D005370 0.0e+00 1115.5 688 79.9
CiPaw.01G262000 Carya illinoinensis HOM05D004484 ORTHO05D005370 4.5e-298 1027.7 690 72.6
QL08p052472 Quercus lobata HOM05D004484 ORTHO05D005370 5.4e-296 1020.8 687 73.5
Hma1.2p1_0086F.1_g044870 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 3.8e-289 998.0 684 71.6
Haze_16815 Corylus avellana HOM05D004484 ORTHO05D005370 4.2e-288 994.6 746 66.8
Dinv32377 Davidia involucrata HOM05D004484 ORTHO05D005370 1.6e-287 992.6 691 70.2
Atru.chr5.309 Acer truncatum HOM05D004484 ORTHO05D005370 1.3e-284 983.0 686 70.0
GSVIVG01027610001 Vitis vinifera HOM05D004484 ORTHO05D005370 1.0e-281 973.4 674 71.7
Sed0020955 Sechium edule HOM05D004484 ORTHO05D005370 2.9e-281 971.8 689 69.5
Nn1g01233 Nelumbo nucifera HOM05D004484 ORTHO05D005370 6.5e-281 970.7 684 70.3
Lalb_Chr13g0291731 Lupinus albus HOM05D004484 ORTHO05D005370 2.5e-280 968.8 690 69.3
CANSAT56G4533 Cannabis sativa HOM05D004484 ORTHO05D005370 1.2e-279 966.5 692 69.1
Eucgr.E01418 Eucalyptus grandis HOM05D004484 ORTHO05D005370 1.6e-279 966.1 689 68.5
TWI23G0227 Tripterygium wilfordii HOM05D004484 ORTHO05D005370 2.7e-279 965.3 687 69.6
TAR629G2468 Trochodendron aralioides HOM05D004484 ORTHO05D005370 3.9e-278 961.4 674 70.3
Lj7A528T57 Lonicera japonica HOM05D004484 ORTHO05D005370 8.7e-278 960.3 699 68.7
Potri.014G069700 Populus trichocarpa HOM05D004484 ORTHO05D005370 2.5e-277 958.7 689 68.8
Ca_19886_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 3.3e-277 958.4 688 69.0
Thecc.01G376200 Theobroma cacao HOM05D004484 ORTHO05D005370 4.3e-277 958.0 688 67.6
CANSAT56G1200 Cannabis sativa HOM05D004484 ORTHO05D005370 7.4e-277 957.2 692 68.4
Peaxi162Scf00021g01723 Petunia axillaris HOM05D004484 ORTHO05D005370 1.3e-276 956.4 685 67.6
Cc02_g36700 Coffea canephora HOM05D004484 ORTHO05D005370 1.6e-276 956.1 687 70.6
Aqoxy5G00403 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 8.2e-276 953.7 687 68.4
Lj3g0013484 Lotus japonicus HOM05D004484 ORTHO05D005370 3.1e-275 951.8 691 68.3
Medtr4g023560 Medicago truncatula HOM05D004484 ORTHO05D005370 2.0e-274 949.1 690 68.1
ClCG05G002220 Citrullus lanatus HOM05D004484 ORTHO05D005370 7.6e-274 947.2 687 68.0
Oeu055487.1 Olea europaea HOM05D004484 ORTHO05D005370 1.3e-273 946.4 688 68.6
PSO478G5008 Papaver somniferum HOM05D004484 ORTHO05D005370 2.9e-273 945.3 689 67.3
Nitab4.5_0000457g0330 Nicotiana tabacum HOM05D004484 ORTHO05D005370 5.0e-273 944.5 688 67.3
Ca_27059_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 6.5e-273 944.1 688 68.5
Manes.01G265900 Manihot esculenta HOM05D004484 ORTHO05D005370 4.2e-272 941.4 690 67.0
Psat7g233440 Pisum sativum HOM05D004484 ORTHO05D005370 1.3e-270 936.4 686 66.9
PGR042G0667 Punica granatum HOM05D004484 ORTHO05D005370 1.3e-270 936.4 692 67.2
Sc02g0002590 Simmondsia chinensis HOM05D004484 ORTHO05D005370 1.3e-270 936.4 672 68.6
arahy.Tifrunner.gnm1.ann1.V1M046 Arachis hypogaea HOM05D004484 ORTHO05D005370 6.7e-270 934.1 685 67.0
arahy.Tifrunner.gnm1.ann1.6K85L9 Arachis hypogaea HOM05D004484 ORTHO05D005370 1.1e-269 933.3 686 67.5
arahy.Tifrunner.gnm1.ann1.HW1IVJ Arachis hypogaea HOM05D004484 ORTHO05D005370 1.1e-269 933.3 686 67.5
arahy.Tifrunner.gnm1.ann1.Q9SWB6 Arachis hypogaea HOM05D004484 ORTHO05D005370 4.3e-269 931.4 686 67.1
MSTRG.20748 Avicennia marina HOM05D004484 ORTHO05D005370 4.3e-269 931.4 688 66.7
MBI12_g10758_MAGBIO Magnolia biondii HOM05D004484 ORTHO05D005370 7.4e-269 930.6 750 63.6
CAN.G388.13 Capsicum annuum HOM05D004484 ORTHO05D005370 6.3e-268 927.5 683 65.7
Ciclev10019016m.g Citrus clementina HOM05D004484 ORTHO05D005370 8.2e-268 927.2 690 66.7
PGSC0003DMG400012761 Solanum tuberosum HOM05D004484 ORTHO05D005370 3.1e-267 925.2 687 65.9
Glyma.05G125700 Glycine max HOM05D004484 ORTHO05D005370 5.3e-267 924.5 690 66.2
HanXRQChr16g0520161 Helianthus annuus HOM05D004484 ORTHO05D005370 6.9e-267 924.1 686 66.8
ECA234G1700 Erigeron canadensis HOM05D004484 ORTHO05D005370 1.2e-266 923.3 685 66.6
CsaV3_3G009680 Cucumis sativus L. HOM05D004484 ORTHO05D005370 2.6e-266 922.2 689 66.2
DCAR_015907 Daucus carota HOM05D004484 ORTHO05D005370 2.6e-266 922.2 689 66.8
Cpa.g.sc18.115 Carica papaya HOM05D004484 ORTHO05D005370 4.5e-266 921.4 688 66.7
CSS0036976 Camellia sinensis var. sinensis HOM05D004484 ORTHO05D005370 5.9e-266 921.0 694 66.4
SGA_v2.0_scaffold153G37012 Striga asiatica HOM05D004484 ORTHO05D005370 7.7e-266 920.6 689 65.6
Lalb_Chr12g0208261 Lupinus albus HOM05D004484 ORTHO05D005370 2.2e-265 919.1 690 65.8
Migut.B01635 Erythranthe guttata HOM05D004484 ORTHO05D005370 5.0e-265 917.9 689 66.9
Phvul.002G205800 Phaseolus vulgaris HOM05D004484 ORTHO05D005370 7.9e-263 910.6 683 64.3
Nitab4.5_0005372g0070 Nicotiana tabacum HOM05D004484 ORTHO05D005370 8.8e-262 907.1 698 65.0
EL10Ac1g00900 Beta vulgaris HOM05D004484 ORTHO05D005370 1.3e-260 903.3 711 63.9
VMungo0251G1206 Vigna mungo HOM05D004484 ORTHO05D005370 2.2e-260 902.5 685 63.6
Solyc01g091350.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 3.7e-260 901.7 687 64.5
Sopen01g037090 Solanum pennellii HOM05D004484 ORTHO05D005370 4.8e-260 901.4 687 64.2
Sabra14G0049400 Salix brachista HOM05D004484 ORTHO05D005370 1.8e-259 899.4 703 64.2
Gorai.007G091100 Gossypium raimondii HOM05D004484 ORTHO05D005370 2.4e-259 899.0 687 64.9
Gohir.A11G080700 Gossypium hirsutum HOM05D004484 ORTHO05D005370 5.3e-259 897.9 687 64.8
Gohir.D11G085300 Gossypium hirsutum HOM05D004484 ORTHO05D005370 5.9e-258 894.4 687 64.8
MELO3C006188.2 Cucumis melo HOM05D004484 ORTHO05D005370 1.4e-256 889.8 654 66.8
vmacro13399 Vaccinium macrocarpon HOM05D004484 ORTHO05D005370 5.5e-256 887.9 689 64.6
Lsat_1_v5_gn_4_43240 Lactuca sativa HOM05D004484 ORTHO05D005370 1.6e-255 886.3 684 64.0
AUR62004221 Chenopodium quinoa HOM05D004484 ORTHO05D005370 1.8e-254 882.9 722 62.6
Cfa001721 Carpinus fangiana HOM05D004484 ORTHO05D005370 2.4e-251 872.5 584 73.5
Aqoxy3G02138 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 2.9e-249 865.5 687 62.4
Ah.13g073490 Amaranthus hybridus HOM05D004484 ORTHO05D005370 1.7e-244 849.7 716 60.5
BcaB04g17469 Brassica carinata HOM05D004484 ORTHO05D005370 8.2e-244 847.4 689 59.7
TPR.G9845 Trifolium pratense HOM05D004484 ORTHO05D005370 1.1e-243 847.0 720 60.8
GSVIVG01027609001 Vitis vinifera HOM05D004484 ORTHO05D005370 1.1e-240 837.0 660 64.8
THA.LOC104817247 Tarenaya hassleriana HOM05D004484 ORTHO05D005370 1.6e-239 833.2 685 59.6
AT1G48050 Arabidopsis thaliana HOM05D004484 ORTHO05D005370 1.0e-238 830.5 689 58.5
Sp1g35020 Schrenkiella parvula HOM05D004484 ORTHO05D005370 1.4e-238 830.1 676 59.3
SHI13523 Sapria himalayana HOM05D004484 ORTHO05D005370 1.8e-238 829.7 659 62.4
Carub.0001s3716 Capsella rubella HOM05D004484 ORTHO05D005370 6.8e-238 827.8 688 58.3
BraSC267t45947Z Brassica rapa HOM05D004484 ORTHO05D005370 8.8e-238 827.4 684 58.6
BcaC07g37180 Brassica carinata HOM05D004484 ORTHO05D005370 7.5e-237 824.3 690 58.6
CARHR037700 Cardamine hirsuta HOM05D004484 ORTHO05D005370 7.5e-237 824.3 688 58.9
C08p05620 Brassica napus HOM05D004484 ORTHO05D005370 1.7e-236 823.2 684 58.6
BolC8t47375H Brassica oleracea HOM05D004484 ORTHO05D005370 1.7e-236 823.2 684 58.6
AL1G54570 Arabidopsis lyrata HOM05D004484 ORTHO05D005370 7.0e-235 817.8 672 59.4
AUR62013627 Chenopodium quinoa HOM05D004484 ORTHO05D005370 9.5e-232 807.4 704 59.7
A08p05330 Brassica napus HOM05D004484 ORTHO05D005370 2.6e-229 799.3 666 58.7
Hund27347 Selenicereus undatus HOM05D004484 ORTHO05D005370 5.2e-222 775.0 607 64.9
HPP92_027818 Vanilla planifolia HOM05D004484 ORTHO05D005370 4.0e-214 748.8 682 56.5
COL.COLO4_07018 Corchorus olitorius HOM05D004484 ORTHO05D005370 1.7e-212 743.4 547 66.5
Zm00001eb064930 Zea mays HOM05D004484 ORTHO05D005370 9.5e-208 727.6 667 54.9
RcHm_v2.0_Chr1g0350581 Rosa chinensis HOM05D004484 ORTHO05D005370 5.4e-203 711.8 381 93.2
arahy.Tifrunner.gnm1.ann1.03ZR4A Arachis hypogaea HOM05D004484 ORTHO05D005370 3.9e-201 705.7 715 53.8
arahy.Tifrunner.gnm1.ann1.5WGS6V Arachis hypogaea HOM05D004484 ORTHO05D005370 4.7e-199 698.7 658 56.5
COL.COLO4_12548 Corchorus olitorius HOM05D004484 ORTHO05D005370 3.4e-197 692.6 711 52.6
Potri.002G148200 Populus trichocarpa HOM05D004484 ORTHO05D005370 3.4e-197 692.6 489 69.3
Hma1.2p1_0086F.1_g044880 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.1e-192 677.6 459 72.8
arahy.Tifrunner.gnm1.ann1.5492A7 Arachis hypogaea HOM05D004484 ORTHO05D005370 4.2e-187 659.1 688 53.1
arahy.Tifrunner.gnm1.ann1.T9R8PC Arachis hypogaea HOM05D004484 ORTHO05D005370 7.1e-187 658.3 688 53.2
unitig_749.g13780 Utricularia gibba HOM05D004484 ORTHO05D005370 1.7e-185 653.7 570 58.8
Thhalv10011351m.g Eutrema salsugineum HOM05D004484 ORTHO05D005370 1.4e-182 644.0 649 51.8
Aa31LG10G5650 Aethionema arabicum HOM05D004484 ORTHO05D005370 4.2e-179 632.5 584 56.2
Pp3c22_11100 Physcomitrium patens HOM05D004484 ORTHO05D005370 6.7e-177 625.2 696 48.1
CDE04G3156 Ceratophyllum demersum HOM05D004484 ORTHO05D005370 7.4e-176 621.7 673 48.9
Lj9C569T11 Lonicera japonica HOM05D004484 ORTHO05D005370 1.3e-175 620.9 468 64.1
ATR0049G077 Amborella trichopoda HOM05D004484 ORTHO05D005370 7.4e-168 595.1 458 62.2
SMO367G0514 Selaginella moellendorffii HOM05D004484 ORTHO05D005370 3.1e-166 589.7 686 45.9
Mapoly0129s0012 Marchantia polymorpha HOM05D004484 ORTHO05D005370 4.2e-163 579.3 638 46.7
RcHm_v2.0_Chr1g0350571 Rosa chinensis HOM05D004484 ORTHO05D005370 6.3e-159 565.5 297 94.3
PGR119G1536 Punica granatum HOM05D004484 ORTHO05D005370 4.6e-154 549.3 516 53.9
AagrBONN_evm.TU.Sc2ySwM_368.3373 Anthoceros agrestis HOM05D004484 ORTHO05D005370 4.5e-141 506.1 688 40.6
CBR_g30081 Chara braunii HOM05D004484 ORTHO05D005370 4.4e-104 383.3 470 41.5
SHI38996 Sapria himalayana HOM05D004484 ORTHO05D005370 5.4e-86 323.2 204 74.5
Hma1.2p1_0701F.1_g205850 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 2.7e-77 294.3 278 56.8
SHI38095 Sapria himalayana HOM05D004484 ORTHO05D005370 2.7e-77 294.3 190 74.7
SHI38094 Sapria himalayana HOM05D004484 ORTHO05D005370 1.8e-60 238.4 211 56.9
arahy.Tifrunner.gnm1.ann1.47H85H Arachis hypogaea HOM05D004484 ORTHO05D005370 5.6e-59 233.4 340 42.6
Glyma.06G243967 Glycine max HOM05D004484 ORTHO05D005370 9.3e-54 216.1 143 67.8
Glyma.01G142851 Glycine max HOM05D004484 ORTHO05D005370 9.0e-49 199.5 164 59.8
SEGI_20047 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 2.9e-47 194.5 222 45.5
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 1.8e-44 185.3 255 41.6
Glyma.17G005802 Glycine max HOM05D004484 ORTHO05D005370 6.3e-42 176.8 192 52.1
QL08p052505 Quercus lobata HOM05D004484 ORTHO05D005370 4.1e-41 174.1 178 58.4
Hma1.2p1_0170F.1_g075250 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.5e-40 172.2 202 48.5
SEGI_29754 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 5.0e-39 167.2 116 69.0
MCO15G158 Micromonas commoda HOM05D004484 ORTHO05D005370 4.2e-38 164.1 525 28.4
CAN.G594.7 Capsicum annuum HOM05D004484 ORTHO05D005370 6.1e-37 160.2 105 71.4
SHI38995 Sapria himalayana HOM05D004484 ORTHO05D005370 1.0e-36 159.5 127 61.4
TPR.G22633 Trifolium pratense HOM05D004484 ORTHO05D005370 2.5e-35 154.8 92 76.1
CAN.G205.22 Capsicum annuum HOM05D004484 ORTHO05D005370 1.3e-31 142.5 96 67.7
SGA_v2.0_scaffold65G22170 Striga asiatica HOM05D004484 ORTHO05D005370 3.6e-29 134.4 201 38.8
Eucgr.I00725 Eucalyptus grandis HOM05D004484 ORTHO05D005370 2.2e-26 125.2 82 68.3
Os03g0856200 Oryza sativa ssp. japonica HOM05D004484 ORTHO05D005370 1.4e-25 122.5 93 59.1
Aa31LG10G5660 Aethionema arabicum HOM05D004484 ORTHO05D005370 4.2e-22 110.9 88 56.8
CAN.G388.14 Capsicum annuum HOM05D004484 ORTHO05D005370 4.2e-22 110.9 75 66.7
Solyc01g091430.2 Solanum lycopersicum HOM05D004484 ORTHO05D005370 4.2e-22 110.9 95 60.0
CAN.G279.6 Capsicum annuum HOM05D004484 ORTHO05D005370 2.1e-21 108.6 72 70.8
SGA_v2.0_scaffold10G05342 Striga asiatica HOM05D004484 ORTHO05D005370 8.2e-18 96.7 193 34.2
Solyc01g091440.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 1.1e-17 96.3 133 44.4
Eucgr.E01421 Eucalyptus grandis HOM05D004484 ORTHO05D005370 7.0e-17 93.6 67 70.1
Glyma.06G243934 Glycine max HOM05D004484 ORTHO05D005370 1.2e-16 92.8 81 54.3
SGA_v2.0_scaffold172G39032 Striga asiatica HOM05D004484 ORTHO05D005370 1.2e-16 92.8 168 35.1
PRCOL_00002704 Prasinoderma coloniale HOM05D004484 ORTHO05D005370 2.0e-16 92.0 491 24.8
Glyma.06G244302 Glycine max HOM05D004484 ORTHO05D005370 3.5e-16 91.3 81 53.1
Eucgr.L02075 Eucalyptus grandis HOM05D004484 ORTHO05D005370 1.7e-15 89.0 67 68.7
CAN.G321.48 Capsicum annuum HOM05D001267 ORTHO05D002376 2.1e-13 82.0 62 62.9
arahy.Tifrunner.gnm1.ann1.0F06NC Arachis hypogaea HOM05D004484 ORTHO05D005370 1.7e-10 72.4 50 64.0
TPR.G9848 Trifolium pratense HOM05D000164 ORTHO05D000096 2.2e-10 72.0 55 58.2
Hma1.2p1_1470F.1_g285600 Hydrangea macrophylla HOM05D000467 ORTHO05D011800 1.3e-07 62.8 50 66.0
Cre10.g423800 Chlamydomonas reinhardtii HOM05D004484 ORTHO05D005370 2.9e-07 61.6 167 30.5
Oeu032522.1 Olea europaea HOM05D004484 ORTHO05D005370 1.5e-06 59.3 63 49.2


User provided reference genes

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