Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G2070 Fragaria x ananassa HOM05D002341 ORTHO05D003165 4.6e-241 837.4 402 100.0
FvH4_6g43880 Fragaria vesca HOM05D002341 ORTHO05D003165 6.9e-221 770.4 385 96.4
RcHm_v2.0_Chr2g0160631 Rosa chinensis HOM05D002341 ORTHO05D003165 3.0e-208 728.4 385 89.4
Sed0003553 Sechium edule HOM05D002341 ORTHO05D003165 1.6e-193 679.5 390 83.1
FvH4_6g29610 Fragaria vesca HOM05D002341 ORTHO05D003165 6.1e-193 677.6 387 82.7
FAN02G2239 Fragaria x ananassa HOM05D002341 ORTHO05D003165 6.1e-193 677.6 387 82.7
FAN05G4711 Fragaria x ananassa HOM05D002341 ORTHO05D003165 6.1e-193 677.6 387 82.7
FAN09G3038 Fragaria x ananassa HOM05D002341 ORTHO05D003165 6.1e-193 677.6 387 82.7
FAN14G4930 Fragaria x ananassa HOM05D002341 ORTHO05D003165 6.1e-193 677.6 387 82.7
RcHm_v2.0_Chr2g0135211 Rosa chinensis HOM05D002341 ORTHO05D003165 6.1e-193 677.6 387 82.7
ClCG09G002950 Citrullus lanatus HOM05D002341 ORTHO05D003165 1.0e-192 676.8 390 82.8
MELO3C023427.2 Cucumis melo HOM05D002341 ORTHO05D003165 1.0e-192 676.8 390 82.8
CsaV3_7G032320 Cucumis sativus L. HOM05D002341 ORTHO05D003165 1.0e-192 676.8 390 82.8
SGA_v2.0_scaffold26G11346 Striga asiatica HOM05D002341 ORTHO05D003165 2.3e-192 675.6 389 82.8
CANSAT56G2164 Cannabis sativa HOM05D002341 ORTHO05D003165 3.0e-192 675.2 388 82.2
Migut.D01080 Erythranthe guttata HOM05D002341 ORTHO05D003165 5.1e-192 674.5 389 81.7
Gohir.D05G123700 Gossypium hirsutum HOM05D002341 ORTHO05D003165 5.1e-192 674.5 390 82.6
Oeu005942.1 Olea europaea HOM05D002341 ORTHO05D003165 5.1e-192 674.5 388 82.5
Gorai.009G127700 Gossypium raimondii HOM05D002341 ORTHO05D003165 6.7e-192 674.1 390 82.6
Thecc.06G025500 Theobroma cacao HOM05D002341 ORTHO05D003165 6.7e-192 674.1 390 82.6
Atru.chr1.2928 Acer truncatum HOM05D002341 ORTHO05D003165 8.7e-192 673.7 390 81.5
Duzib160G0553 Durio zibethinus HOM05D002341 ORTHO05D003165 8.7e-192 673.7 390 82.6
Sed0021407 Sechium edule HOM05D002341 ORTHO05D003165 8.7e-192 673.7 391 82.6
MSTRG.4705 Avicennia marina HOM05D002341 ORTHO05D003165 1.5e-191 672.9 389 82.5
SalBow6G3017 Salvia bowleyana HOM05D002341 ORTHO05D003165 1.5e-191 672.9 389 82.0
SalBow6G5900 Salvia bowleyana HOM05D002341 ORTHO05D003165 1.5e-191 672.9 389 82.0
COL.COLO4_24410 Corchorus olitorius HOM05D002341 ORTHO05D003165 2.5e-191 672.2 385 83.1
CiPaw.01G248600 Carya illinoinensis HOM05D002341 ORTHO05D003165 7.4e-191 670.6 389 81.2
Hma1.2p1_0017F.1_g011180 Hydrangea macrophylla HOM05D002341 ORTHO05D003165 7.4e-191 670.6 389 81.2
Zm00001eb375530 Zea mays HOM05D002341 ORTHO05D003165 9.7e-191 670.2 390 82.1
Lalb_Chr24g0395471 Lupinus albus HOM05D002341 ORTHO05D003165 1.3e-190 669.8 388 81.7
MD17G1212800 Malus domestica HOM05D002341 ORTHO05D003165 1.6e-190 669.5 389 81.7
PGSC0003DMG400028736 Solanum tuberosum HOM05D002341 ORTHO05D003165 2.2e-190 669.1 387 81.4
Lalb_Chr14g0373851 Lupinus albus HOM05D002341 ORTHO05D003165 2.8e-190 668.7 388 81.4
MSTRG.9422 Avicennia marina HOM05D002341 ORTHO05D003165 3.7e-190 668.3 389 81.2
MD00G1072300 Malus domestica HOM05D002341 ORTHO05D003165 4.8e-190 667.9 389 81.5
Peaxi162Scf01838g00019 Petunia axillaris HOM05D002341 ORTHO05D003165 4.8e-190 667.9 387 81.4
Hund00514 Selenicereus undatus HOM05D002341 ORTHO05D003165 4.8e-190 667.9 389 81.2
Medtr2g103960 Medicago truncatula HOM05D002341 ORTHO05D003165 6.3e-190 667.5 390 81.3
ECA247G2936 Erigeron canadensis HOM05D002341 ORTHO05D003165 8.2e-190 667.2 390 80.8
Lj3g0016754 Lotus japonicus HOM05D002341 ORTHO05D003165 8.2e-190 667.2 389 80.7
Nn8g39518 Nelumbo nucifera HOM05D002341 ORTHO05D003165 8.2e-190 667.2 389 81.2
VMungo1080G1733 Vigna mungo HOM05D002341 ORTHO05D003165 8.2e-190 667.2 389 80.5
Eucgr.F03879 Eucalyptus grandis HOM05D002341 ORTHO05D003165 1.1e-189 666.8 390 81.5
THA.LOC104800410 Tarenaya hassleriana HOM05D002341 ORTHO05D003165 1.1e-189 666.8 389 81.5
DCAR_025515 Daucus carota HOM05D002341 ORTHO05D003165 1.4e-189 666.4 389 81.2
Phvul.005G178600 Phaseolus vulgaris HOM05D002341 ORTHO05D003165 1.8e-189 666.0 389 80.5
Psat5g302520 Pisum sativum HOM05D002341 ORTHO05D003165 1.8e-189 666.0 390 80.8
AUR62011512 Chenopodium quinoa HOM05D002341 ORTHO05D003165 2.4e-189 665.6 388 81.4
AUR62016331 Chenopodium quinoa HOM05D002341 ORTHO05D003165 2.4e-189 665.6 388 81.4
AL2G41470 Arabidopsis lyrata HOM05D002341 ORTHO05D003165 5.3e-189 664.5 390 81.5
BcaB06g28506 Brassica carinata HOM05D002341 ORTHO05D003165 5.3e-189 664.5 390 81.8
Nn2g12097 Nelumbo nucifera HOM05D002341 ORTHO05D003165 5.3e-189 664.5 389 81.0
Sc10g0008090 Simmondsia chinensis HOM05D002341 ORTHO05D003165 5.3e-189 664.5 389 80.5
BcaNung01746 Brassica carinata HOM05D002341 ORTHO05D003165 9.0e-189 663.7 390 81.8
CAN.G147.16 Capsicum annuum HOM05D002341 ORTHO05D003165 9.0e-189 663.7 387 81.1
Nitab4.5_0000366g0200 Nicotiana tabacum HOM05D002341 ORTHO05D003165 9.0e-189 663.7 387 81.4
A04p23900 Brassica napus HOM05D002341 ORTHO05D003165 1.2e-188 663.3 390 81.5
BraA04t17913Z Brassica rapa HOM05D002341 ORTHO05D003165 1.2e-188 663.3 390 81.5
CDE02G3147 Ceratophyllum demersum HOM05D002341 ORTHO05D003165 1.2e-188 663.3 390 81.8
Thhalv10017992m.g Eutrema salsugineum HOM05D002341 ORTHO05D003165 1.2e-188 663.3 390 81.0
TPR.G37161 Trifolium pratense HOM05D002341 ORTHO05D003165 1.2e-188 663.3 390 80.3
Zm00001eb271550 Zea mays HOM05D002341 ORTHO05D003165 1.5e-188 662.9 388 81.4
Ah.01g020550 Amaranthus hybridus HOM05D002341 ORTHO05D003165 2.0e-188 662.5 389 80.5
AT1G80070 Arabidopsis thaliana HOM05D002341 ORTHO05D003165 2.6e-188 662.1 387 80.6
CARHR074430 Cardamine hirsuta HOM05D002341 ORTHO05D003165 2.6e-188 662.1 389 80.5
BcaB06g28420 Brassica carinata HOM05D002341 ORTHO05D003165 3.4e-188 661.8 389 81.0
BcaC09g51361 Brassica carinata HOM05D002341 ORTHO05D003165 3.4e-188 661.8 390 81.0
A01p11740 Brassica napus HOM05D002341 ORTHO05D003165 3.4e-188 661.8 390 81.0
C01p13930 Brassica napus HOM05D002341 ORTHO05D003165 3.4e-188 661.8 390 81.0
BolC1t01360H Brassica oleracea HOM05D002341 ORTHO05D003165 3.4e-188 661.8 390 81.0
CSS0044190 Camellia sinensis var. sinensis HOM05D002341 ORTHO05D003165 3.4e-188 661.8 389 80.2
HanXRQChr04g0097891 Helianthus annuus HOM05D002341 ORTHO05D003165 3.4e-188 661.8 390 80.8
Sp5g35830 Schrenkiella parvula HOM05D002341 ORTHO05D003165 3.4e-188 661.8 390 81.0
Glyma.13G366100 Glycine max HOM05D002341 ORTHO05D003165 4.5e-188 661.4 389 80.7
Carub.0002s2745 Capsella rubella HOM05D002341 ORTHO05D003165 5.9e-188 661.0 389 80.2
PSO017G1385 Papaver somniferum HOM05D002341 ORTHO05D003165 5.9e-188 661.0 388 80.7
PSO170G3007 Papaver somniferum HOM05D002341 ORTHO05D003165 5.9e-188 661.0 388 80.7
Solyc07g008880.3 Solanum lycopersicum HOM05D002341 ORTHO05D003165 5.9e-188 661.0 387 80.9
Sopen07g004810 Solanum pennellii HOM05D002341 ORTHO05D003165 5.9e-188 661.0 387 80.9
Aqoxy3G03781 Aquilegia oxysepala HOM05D002341 ORTHO05D003165 7.7e-188 660.6 388 80.7
CDE09G0407 Ceratophyllum demersum HOM05D002341 ORTHO05D003165 7.7e-188 660.6 390 81.5
ATR0800G142 Amborella trichopoda HOM05D002341 ORTHO05D003165 1.0e-187 660.2 389 81.0
Sabra03G0018200 Salix brachista HOM05D002341 ORTHO05D003165 1.0e-187 660.2 389 80.5
BraA01t01116Z Brassica rapa HOM05D002341 ORTHO05D003165 1.3e-187 659.8 389 80.5
Cfa001956 Carpinus fangiana HOM05D002341 ORTHO05D003165 1.3e-187 659.8 390 80.5
Dinv38126 Davidia involucrata HOM05D002341 ORTHO05D003165 1.3e-187 659.8 389 81.0
Eucgr.F03935 Eucalyptus grandis HOM05D002341 ORTHO05D003165 1.3e-187 659.8 390 80.8
Glyma.15G007100 Glycine max HOM05D002341 ORTHO05D003165 1.3e-187 659.8 389 80.5
THA.LOC104812513 Tarenaya hassleriana HOM05D002341 ORTHO05D003165 1.3e-187 659.8 389 80.2
Ca_01053_v3 Cicer arietinum L. HOM05D002341 ORTHO05D003165 1.7e-187 659.4 390 80.8
Ciclev10024683m.g Citrus clementina HOM05D002341 ORTHO05D003165 1.7e-187 659.4 390 80.3
EL10Ac9g21877 Beta vulgaris HOM05D002341 ORTHO05D003165 2.2e-187 659.1 389 79.9
TAR625G0212 Trochodendron aralioides HOM05D002341 ORTHO05D003165 2.2e-187 659.1 389 80.5
Gorai.011G084400 Gossypium raimondii HOM05D002341 ORTHO05D003165 3.8e-187 658.3 389 81.0
Cc00_g08660 Coffea canephora HOM05D002341 ORTHO05D003165 5.0e-187 657.9 389 80.5
Manes.04G112400 Manihot esculenta HOM05D002341 ORTHO05D003165 6.5e-187 657.5 389 80.7
TWI75G1620 Tripterygium wilfordii HOM05D002341 ORTHO05D003165 6.5e-187 657.5 389 80.7
Actinidia15757 Actinidia chinensis HOM05D002341 ORTHO05D003165 8.5e-187 657.1 389 80.7
Duzib235G1417 Durio zibethinus HOM05D002341 ORTHO05D003165 8.5e-187 657.1 390 80.8
Manes.11G057400 Manihot esculenta HOM05D002341 ORTHO05D003165 1.4e-186 656.4 389 80.7
PGR102G3099 Punica granatum HOM05D002341 ORTHO05D003165 1.4e-186 656.4 394 79.2
Lj9C499G5 Lonicera japonica HOM05D002341 ORTHO05D003165 1.9e-186 656.0 390 80.0
TPR.G24585 Trifolium pratense HOM05D002341 ORTHO05D003165 2.5e-186 655.6 385 80.3
Cc01_g01870 Coffea canephora HOM05D002341 ORTHO05D003165 3.2e-186 655.2 389 80.2
Potri.003G031900 Populus trichocarpa HOM05D002341 ORTHO05D003165 4.2e-186 654.8 390 79.7
SMO145G0262 Selaginella moellendorffii HOM05D002341 ORTHO05D003165 4.2e-186 654.8 391 78.8
Dinv30610 Davidia involucrata HOM05D002341 ORTHO05D003165 5.5e-186 654.4 389 79.2
QL05p031390 Quercus lobata HOM05D002341 ORTHO05D003165 5.5e-186 654.4 419 75.7
Rhsim08G0212600 Rhododendron simsii HOM05D002341 ORTHO05D003165 5.5e-186 654.4 389 79.9
AagrBONN_evm.TU.Sc2ySwM_362.189 Anthoceros agrestis HOM05D002341 ORTHO05D003165 9.4e-186 653.7 392 79.1
arahy.Tifrunner.gnm1.ann1.B7D93H Arachis hypogaea HOM05D002341 ORTHO05D003165 1.2e-185 653.3 389 80.2
arahy.Tifrunner.gnm1.ann1.DCJ864 Arachis hypogaea HOM05D002341 ORTHO05D003165 1.2e-185 653.3 389 80.2
Aa31LG3G3350 Aethionema arabicum HOM05D002341 ORTHO05D003165 1.6e-185 652.9 390 79.7
Mapoly0019s0008 Marchantia polymorpha HOM05D002341 ORTHO05D003165 1.6e-185 652.9 396 78.0
vmacro19000 Vaccinium macrocarpon HOM05D002341 ORTHO05D003165 1.6e-185 652.9 389 79.9
AT4G38780 Arabidopsis thaliana HOM05D002341 ORTHO05D003165 4.6e-185 651.4 393 78.9
C04p08780 Brassica napus HOM05D002341 ORTHO05D003165 6.1e-185 651.0 398 78.4
BolC4t22470H Brassica oleracea HOM05D002341 ORTHO05D003165 6.1e-185 651.0 398 78.4
BcaC02g12021 Brassica carinata HOM05D002341 ORTHO05D003165 7.9e-185 650.6 398 78.4
GSVIVG01017346001 Vitis vinifera HOM05D002341 ORTHO05D003165 7.9e-185 650.6 389 79.7
HanXRQChr02g0033481 Helianthus annuus HOM05D002341 ORTHO05D003165 1.8e-184 649.4 390 78.5
BolC4t27552H Brassica oleracea HOM05D002341 ORTHO05D003165 2.3e-184 649.0 419 76.1
Pp3c8_25090 Physcomitrium patens HOM05D002341 ORTHO05D003165 3.0e-184 648.7 391 78.3
A05p07330 Brassica napus HOM05D002341 ORTHO05D003165 3.9e-184 648.3 395 78.5
Pp3c24_20910 Physcomitrium patens HOM05D002341 ORTHO05D003165 3.9e-184 648.3 391 78.3
BcaB02g09158 Brassica carinata HOM05D002341 ORTHO05D003165 6.7e-184 647.5 393 78.1
SEGI_03160 Sequoiadendron giganteum HOM05D002341 ORTHO05D003165 8.8e-184 647.1 389 79.4
SEGI_15815 Sequoiadendron giganteum HOM05D002341 ORTHO05D003165 8.8e-184 647.1 389 79.4
BraA05t19698Z Brassica rapa HOM05D002341 ORTHO05D003165 3.3e-183 645.2 395 78.2
Medtr8g011150 Medicago truncatula HOM05D002341 ORTHO05D003165 4.8e-182 641.3 389 78.1
Haze_16566 Corylus avellana HOM05D002341 ORTHO05D003165 8.2e-182 640.6 428 73.1
Aqoxy3G02657 Aquilegia oxysepala HOM05D002341 ORTHO05D003165 1.5e-180 636.3 388 77.6
Lsat_1_v5_gn_1_34320 Lactuca sativa HOM05D002341 ORTHO05D003165 7.7e-180 634.0 390 78.5
Thhalv10024184m.g Eutrema salsugineum HOM05D002341 ORTHO05D003165 1.4e-178 629.8 388 77.1
SHI11229 Sapria himalayana HOM05D002341 ORTHO05D003165 7.9e-177 624.0 388 78.1
CBR_g48660 Chara braunii HOM05D002341 ORTHO05D003165 1.0e-176 623.6 396 76.0
C04p60530 Brassica napus HOM05D002341 ORTHO05D003165 1.1e-175 620.2 369 80.5
Oeu045135.1 Olea europaea HOM05D002341 ORTHO05D003165 7.4e-175 617.5 385 77.7
Gohir.A05G122750 Gossypium hirsutum HOM05D002341 ORTHO05D003165 2.8e-174 615.5 361 82.3
Prupe.3G223400 Prunus persica HOM05D002341 ORTHO05D003165 4.8e-174 614.8 388 77.3
DCAR_022311 Daucus carota HOM05D002341 ORTHO05D003165 8.2e-174 614.0 386 76.7
Prupe.3G088200 Prunus persica HOM05D002341 ORTHO05D003165 7.2e-170 600.9 390 75.6
PRCOL_00001855 Prasinoderma coloniale HOM05D002341 ORTHO05D003165 3.6e-169 598.6 409 69.9
Cre01.g016050 Chlamydomonas reinhardtii HOM05D002341 ORTHO05D003165 6.1e-169 597.8 393 71.2
MCO02G483 Micromonas commoda HOM05D002341 ORTHO05D003165 2.0e-167 592.8 394 71.8
ECA246G5065 Erigeron canadensis HOM05D002341 ORTHO05D003165 3.1e-157 558.9 388 70.6
Os05g0163250 Oryza sativa ssp. japonica HOM05D002341 ORTHO05D003165 1.7e-155 553.1 329 78.4
BcaC05g27955 Brassica carinata HOM05D002341 ORTHO05D003165 5.0e-155 551.6 395 69.1
Peaxi162Scf00089g00635 Petunia axillaris HOM05D002341 ORTHO05D003165 1.9e-154 549.7 387 69.8
AL7G10650 Arabidopsis lyrata HOM05D002341 ORTHO05D003165 4.2e-154 548.5 338 76.0
Haze_26409 Corylus avellana HOM05D002341 ORTHO05D003165 2.1e-153 546.2 385 68.1
AL7G40190 Arabidopsis lyrata HOM05D002341 ORTHO05D003165 3.4e-151 538.9 335 75.5
TAR383G0801 Trochodendron aralioides HOM05D002341 ORTHO05D003165 2.4e-149 532.7 389 68.1
Cfa023699 Carpinus fangiana HOM05D002341 ORTHO05D003165 8.9e-144 514.2 397 60.7
Gohir.A10G073101 Gossypium hirsutum HOM05D002341 ORTHO05D003165 5.7e-143 511.5 309 81.2
Gohir.D10G077825 Gossypium hirsutum HOM05D002341 ORTHO05D003165 5.7e-143 511.5 309 81.2
SGA_v2.0_scaffold332G48967 Striga asiatica HOM05D002341 ORTHO05D003165 2.9e-142 509.2 381 66.1
Nitab4.5_0001200g0150 Nicotiana tabacum HOM05D002341 ORTHO05D003165 1.5e-135 486.9 365 67.4
C05p39590 Brassica napus HOM05D002341 ORTHO05D003165 1.9e-133 479.9 302 75.5
BolC5t32699H Brassica oleracea HOM05D002341 ORTHO05D003165 7.8e-132 474.6 298 76.5
Os06g0167000 Oryza sativa ssp. japonica HOM05D002341 ORTHO05D003165 3.9e-131 472.2 283 80.9
CARHR222110 Cardamine hirsuta HOM05D002341 ORTHO05D003165 1.1e-120 437.6 263 80.6
COL.COLO4_11940 Corchorus olitorius HOM05D002341 ORTHO05D003165 1.2e-119 434.1 385 60.5
Aqoxy180s006 Aquilegia oxysepala HOM05D002341 ORTHO05D003165 6.2e-113 411.8 258 77.1
FAN14G1989 Fragaria x ananassa HOM05D002341 ORTHO05D003165 8.1e-113 411.4 354 63.0
Nitab4.5_0007065g0030 Nicotiana tabacum HOM05D002341 ORTHO05D003165 1.2e-108 397.5 244 74.6
FAN09G4661 Fragaria x ananassa HOM05D002341 ORTHO05D003165 9.9e-103 377.9 254 76.4
Nitab4.5_0002890g0050 Nicotiana tabacum HOM05D002341 ORTHO05D003165 1.3e-102 377.5 385 53.0
unitig_747.g21300 Utricularia gibba HOM05D002341 ORTHO05D003165 1.1e-90 337.8 204 77.0
Medtr1g060060 Medicago truncatula HOM05D002341 ORTHO05D003165 6.1e-68 262.3 181 75.7
Medtr1g060100 Medicago truncatula HOM05D002341 ORTHO05D003165 6.1e-68 262.3 181 75.7
HanXRQChr16g0508831 Helianthus annuus HOM05D002341 ORTHO05D003165 4.1e-64 249.6 155 72.9
CiPaw.02G157600 Carya illinoinensis HOM05D002341 ORTHO05D003165 1.6e-55 221.1 140 71.4
FAN09G0817 Fragaria x ananassa HOM05D002341 ORTHO05D003165 2.1e-44 184.1 86 97.7
unitig_747.g21299 Utricularia gibba HOM05D002341 ORTHO05D003165 1.1e-40 171.8 91 92.3
HPP92_003044 Vanilla planifolia HOM05D002341 ORTHO05D003165 3.1e-40 170.2 91 92.3
Aqoxy180s005 Aquilegia oxysepala HOM05D002341 ORTHO05D003165 6.3e-33 146.0 89 74.2
vmacro22816 Vaccinium macrocarpon HOM05D002341 ORTHO05D012275 3.8e-30 136.7 81 75.3
vmacro12874 Vaccinium macrocarpon HOM05D002341 ORTHO05D015231 8.0e-28 129.0 124 52.4
Cpa.g.sc67.48 Carica papaya HOM05D002341 ORTHO05D003165 4.0e-27 126.7 69 76.8
Carub.0007s2658 Capsella rubella HOM05D002341 ORTHO05D017369 3.3e-21 107.1 123 44.7
FAN02G2298 Fragaria x ananassa HOM05D002341 ORTHO05D003165 2.5e-13 80.9 38 92.1
MD09G1102300 Malus domestica HOM05D002341 ORTHO05D003165 6.2e-12 76.3 66 57.6


User provided reference genes

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