Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G1897 Fragaria x ananassa HOM05D004484 ORTHO05D005370 0.0e+00 1328.5 664 100.0
FvH4_7g11900 Fragaria vesca HOM05D004484 ORTHO05D005370 0.0e+00 1250.0 691 92.5
FAN10G1483 Fragaria x ananassa HOM05D004484 ORTHO05D005370 0.0e+00 1238.8 691 92.0
FAN06G1787 Fragaria x ananassa HOM05D004484 ORTHO05D005370 0.0e+00 1237.2 691 91.9
FAN06G3319 Fragaria x ananassa HOM05D004484 ORTHO05D005370 0.0e+00 1236.5 691 91.8
FAN10G2369 Fragaria x ananassa HOM05D004484 ORTHO05D005370 0.0e+00 1235.7 691 91.9
FAN01G0628 Fragaria x ananassa HOM05D004484 ORTHO05D005370 0.0e+00 1232.2 691 91.3
Prupe.2G145600 Prunus persica HOM05D004484 ORTHO05D005370 4.6e-307 1057.4 691 76.4
MD07G1121000 Malus domestica HOM05D004484 ORTHO05D005370 7.2e-300 1033.5 689 74.9
CiPaw.01G262000 Carya illinoinensis HOM05D004484 ORTHO05D005370 6.3e-272 940.6 692 67.6
QL08p052472 Quercus lobata HOM05D004484 ORTHO05D005370 8.3e-272 940.3 689 68.5
Haze_16815 Corylus avellana HOM05D004484 ORTHO05D005370 6.3e-264 914.1 748 62.7
Dinv32377 Davidia involucrata HOM05D004484 ORTHO05D005370 2.4e-263 912.1 693 65.7
Atru.chr5.309 Acer truncatum HOM05D004484 ORTHO05D005370 9.2e-263 910.2 688 66.3
Lalb_Chr13g0291731 Lupinus albus HOM05D004484 ORTHO05D005370 1.6e-259 899.4 692 66.0
GSVIVG01027610001 Vitis vinifera HOM05D004484 ORTHO05D005370 5.2e-258 894.4 676 67.8
Sed0020955 Sechium edule HOM05D004484 ORTHO05D005370 6.8e-258 894.0 691 65.0
Ca_19886_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 2.0e-257 892.5 689 65.7
Hma1.2p1_0086F.1_g044870 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 7.5e-257 890.6 688 66.0
Nn1g01233 Nelumbo nucifera HOM05D004484 ORTHO05D005370 9.8e-257 890.2 686 65.9
Potri.014G069700 Populus trichocarpa HOM05D004484 ORTHO05D005370 1.3e-256 889.8 690 64.8
CANSAT56G4533 Cannabis sativa HOM05D004484 ORTHO05D005370 6.4e-256 887.5 694 64.6
TWI23G0227 Tripterygium wilfordii HOM05D004484 ORTHO05D005370 3.2e-255 885.2 689 64.3
Thecc.01G376200 Theobroma cacao HOM05D004484 ORTHO05D005370 4.1e-255 884.8 690 63.8
Lj3g0013484 Lotus japonicus HOM05D004484 ORTHO05D005370 5.4e-255 884.4 685 65.5
Eucgr.E01418 Eucalyptus grandis HOM05D004484 ORTHO05D005370 7.0e-255 884.0 691 63.8
Medtr4g023560 Medicago truncatula HOM05D004484 ORTHO05D005370 7.0e-255 884.0 690 64.2
Ca_27059_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 6.0e-254 880.9 689 65.0
Aqoxy5G00403 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 3.9e-253 878.2 689 64.0
CANSAT56G1200 Cannabis sativa HOM05D004484 ORTHO05D005370 3.9e-253 878.2 694 63.8
Cc02_g36700 Coffea canephora HOM05D004484 ORTHO05D005370 1.1e-252 876.7 689 64.9
Psat7g233440 Pisum sativum HOM05D004484 ORTHO05D005370 1.6e-251 872.8 687 63.5
TAR629G2468 Trochodendron aralioides HOM05D004484 ORTHO05D005370 1.6e-251 872.8 672 65.5
PSO478G5008 Papaver somniferum HOM05D004484 ORTHO05D005370 2.1e-251 872.5 694 62.5
Lj7A528T57 Lonicera japonica HOM05D004484 ORTHO05D005370 4.7e-251 871.3 701 64.2
Manes.01G265900 Manihot esculenta HOM05D004484 ORTHO05D005370 2.0e-249 865.9 692 62.4
PGR042G0667 Punica granatum HOM05D004484 ORTHO05D005370 2.0e-249 865.9 694 63.7
Oeu055487.1 Olea europaea HOM05D004484 ORTHO05D005370 9.8e-249 863.6 690 64.2
Sc02g0002590 Simmondsia chinensis HOM05D004484 ORTHO05D005370 1.7e-248 862.8 674 64.7
Ciclev10019016m.g Citrus clementina HOM05D004484 ORTHO05D005370 3.7e-248 861.7 692 62.9
Nitab4.5_0000457g0330 Nicotiana tabacum HOM05D004484 ORTHO05D005370 8.3e-248 860.5 690 62.2
CSS0036976 Camellia sinensis var. sinensis HOM05D004484 ORTHO05D005370 1.1e-247 860.1 681 64.3
MSTRG.20748 Avicennia marina HOM05D004484 ORTHO05D005370 1.9e-247 859.4 689 62.4
SGA_v2.0_scaffold153G37012 Striga asiatica HOM05D004484 ORTHO05D005370 4.1e-247 858.2 689 62.4
Peaxi162Scf00021g01723 Petunia axillaris HOM05D004484 ORTHO05D005370 7.1e-247 857.4 689 62.1
Glyma.05G125700 Glycine max HOM05D004484 ORTHO05D005370 1.2e-246 856.7 692 63.0
Phvul.002G205800 Phaseolus vulgaris HOM05D004484 ORTHO05D005370 1.6e-246 856.3 684 61.7
arahy.Tifrunner.gnm1.ann1.V1M046 Arachis hypogaea HOM05D004484 ORTHO05D005370 2.3e-245 852.4 691 63.2
arahy.Tifrunner.gnm1.ann1.6K85L9 Arachis hypogaea HOM05D004484 ORTHO05D005370 3.0e-245 852.0 691 63.4
arahy.Tifrunner.gnm1.ann1.HW1IVJ Arachis hypogaea HOM05D004484 ORTHO05D005370 3.0e-245 852.0 691 63.4
arahy.Tifrunner.gnm1.ann1.Q9SWB6 Arachis hypogaea HOM05D004484 ORTHO05D005370 5.1e-245 851.3 691 63.1
ClCG05G002220 Citrullus lanatus HOM05D004484 ORTHO05D005370 8.6e-245 850.5 691 62.8
HanXRQChr16g0520161 Helianthus annuus HOM05D004484 ORTHO05D005370 1.1e-244 850.1 687 62.4
MBI12_g10758_MAGBIO Magnolia biondii HOM05D004484 ORTHO05D005370 1.1e-244 850.1 719 60.6
Lalb_Chr12g0208261 Lupinus albus HOM05D004484 ORTHO05D005370 1.9e-244 849.4 692 62.4
Cpa.g.sc18.115 Carica papaya HOM05D004484 ORTHO05D005370 3.3e-244 848.6 690 63.0
ECA234G1700 Erigeron canadensis HOM05D004484 ORTHO05D005370 4.3e-244 848.2 687 62.4
Migut.B01635 Erythranthe guttata HOM05D004484 ORTHO05D005370 9.5e-244 847.0 689 62.7
CsaV3_3G009680 Cucumis sativus L. HOM05D004484 ORTHO05D005370 2.1e-243 845.9 691 61.9
CAN.G388.13 Capsicum annuum HOM05D004484 ORTHO05D005370 4.7e-243 844.7 685 61.2
VMungo0251G1206 Vigna mungo HOM05D004484 ORTHO05D005370 6.2e-243 844.3 686 60.9
PGSC0003DMG400012761 Solanum tuberosum HOM05D004484 ORTHO05D005370 6.8e-242 840.9 689 61.2
DCAR_015907 Daucus carota HOM05D004484 ORTHO05D005370 1.5e-241 839.7 691 61.9
Sabra14G0049400 Salix brachista HOM05D004484 ORTHO05D005370 1.4e-239 833.2 702 60.5
EL10Ac1g00900 Beta vulgaris HOM05D004484 ORTHO05D005370 9.2e-239 830.5 713 59.9
Sopen01g037090 Solanum pennellii HOM05D004484 ORTHO05D005370 3.0e-237 825.5 689 59.7
Solyc01g091350.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 1.5e-236 823.2 689 59.7
Nitab4.5_0005372g0070 Nicotiana tabacum HOM05D004484 ORTHO05D005370 2.5e-236 822.4 700 59.7
AUR62004221 Chenopodium quinoa HOM05D004484 ORTHO05D005370 8.1e-235 817.4 724 59.3
Gohir.A11G080700 Gossypium hirsutum HOM05D004484 ORTHO05D005370 1.8e-234 816.2 689 60.7
Gorai.007G091100 Gossypium raimondii HOM05D004484 ORTHO05D005370 3.1e-234 815.5 689 60.7
Lsat_1_v5_gn_4_43240 Lactuca sativa HOM05D004484 ORTHO05D005370 3.1e-234 815.5 691 60.1
MELO3C006188.2 Cucumis melo HOM05D004484 ORTHO05D005370 1.5e-233 813.1 656 62.3
Gohir.D11G085300 Gossypium hirsutum HOM05D004484 ORTHO05D005370 4.4e-233 811.6 689 60.7
vmacro13399 Vaccinium macrocarpon HOM05D004484 ORTHO05D005370 1.1e-228 797.0 693 59.3
Aqoxy3G02138 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 1.9e-228 796.2 689 58.6
TPR.G9845 Trifolium pratense HOM05D004484 ORTHO05D005370 6.9e-226 787.7 721 58.1
BcaB04g17469 Brassica carinata HOM05D004484 ORTHO05D005370 2.0e-225 786.2 690 56.5
Ah.13g073490 Amaranthus hybridus HOM05D004484 ORTHO05D005370 3.4e-225 785.4 718 57.1
Cfa001721 Carpinus fangiana HOM05D004484 ORTHO05D005370 6.4e-224 781.2 586 67.7
Sp1g35020 Schrenkiella parvula HOM05D004484 ORTHO05D005370 1.3e-219 766.9 677 56.0
BraSC267t45947Z Brassica rapa HOM05D004484 ORTHO05D005370 2.8e-219 765.8 685 55.5
THA.LOC104817247 Tarenaya hassleriana HOM05D004484 ORTHO05D005370 4.8e-219 765.0 686 56.1
AT1G48050 Arabidopsis thaliana HOM05D004484 ORTHO05D005370 6.2e-219 764.6 690 55.1
BcaC07g37180 Brassica carinata HOM05D004484 ORTHO05D005370 2.4e-218 762.7 691 55.4
BolC8t47375H Brassica oleracea HOM05D004484 ORTHO05D005370 4.0e-218 761.9 685 55.5
CARHR037700 Cardamine hirsuta HOM05D004484 ORTHO05D005370 4.0e-218 761.9 689 55.6
C08p05620 Brassica napus HOM05D004484 ORTHO05D005370 5.3e-218 761.5 685 55.5
Carub.0001s3716 Capsella rubella HOM05D004484 ORTHO05D005370 2.0e-217 759.6 689 54.6
SHI13523 Sapria himalayana HOM05D004484 ORTHO05D005370 1.3e-216 756.9 662 58.3
GSVIVG01027609001 Vitis vinifera HOM05D004484 ORTHO05D005370 2.2e-216 756.1 662 59.7
AL1G54570 Arabidopsis lyrata HOM05D004484 ORTHO05D005370 1.6e-214 750.0 673 55.6
A08p05330 Brassica napus HOM05D004484 ORTHO05D005370 8.1e-211 737.6 667 55.5
AUR62013627 Chenopodium quinoa HOM05D004484 ORTHO05D005370 1.3e-208 730.3 689 57.0
Hund27347 Selenicereus undatus HOM05D004484 ORTHO05D005370 2.5e-199 699.5 609 60.1
COL.COLO4_07018 Corchorus olitorius HOM05D004484 ORTHO05D005370 4.8e-195 685.3 547 62.3
HPP92_027818 Vanilla planifolia HOM05D004484 ORTHO05D005370 7.2e-191 671.4 687 52.8
Zm00001eb064930 Zea mays HOM05D004484 ORTHO05D005370 8.8e-189 664.5 669 52.2
arahy.Tifrunner.gnm1.ann1.03ZR4A Arachis hypogaea HOM05D004484 ORTHO05D005370 1.8e-186 656.8 716 51.5
arahy.Tifrunner.gnm1.ann1.5WGS6V Arachis hypogaea HOM05D004484 ORTHO05D005370 2.2e-184 649.8 659 54.0
RcHm_v2.0_Chr1g0350581 Rosa chinensis HOM05D004484 ORTHO05D005370 7.2e-183 644.8 381 85.0
Hma1.2p1_0086F.1_g044880 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 3.9e-181 639.0 461 69.8
COL.COLO4_12548 Corchorus olitorius HOM05D004484 ORTHO05D005370 2.9e-176 622.9 712 49.3
Potri.002G148200 Populus trichocarpa HOM05D004484 ORTHO05D005370 2.5e-175 619.8 488 63.9
CDE04G3156 Ceratophyllum demersum HOM05D004484 ORTHO05D005370 3.3e-172 609.4 651 49.5
arahy.Tifrunner.gnm1.ann1.5492A7 Arachis hypogaea HOM05D004484 ORTHO05D005370 4.4e-172 609.0 689 50.4
arahy.Tifrunner.gnm1.ann1.T9R8PC Arachis hypogaea HOM05D004484 ORTHO05D005370 1.1e-167 594.3 691 50.2
Thhalv10011351m.g Eutrema salsugineum HOM05D004484 ORTHO05D005370 1.9e-167 593.6 600 52.0
Pp3c22_11100 Physcomitrium patens HOM05D004484 ORTHO05D005370 5.5e-167 592.0 700 46.1
unitig_749.g13780 Utricularia gibba HOM05D004484 ORTHO05D005370 3.6e-166 589.3 571 55.2
Aa31LG10G5650 Aethionema arabicum HOM05D004484 ORTHO05D005370 1.6e-161 573.9 585 52.5
Lj9C569T11 Lonicera japonica HOM05D004484 ORTHO05D005370 8.5e-160 568.2 468 60.0
ATR0049G077 Amborella trichopoda HOM05D004484 ORTHO05D005370 8.6e-152 541.6 458 57.2
SMO367G0514 Selaginella moellendorffii HOM05D004484 ORTHO05D005370 4.7e-150 535.8 690 43.2
RcHm_v2.0_Chr1g0350571 Rosa chinensis HOM05D004484 ORTHO05D005370 2.3e-149 533.5 299 90.6
Mapoly0129s0012 Marchantia polymorpha HOM05D004484 ORTHO05D005370 1.7e-147 527.3 637 43.5
PGR119G1536 Punica granatum HOM05D004484 ORTHO05D005370 2.9e-139 500.0 516 49.8
AagrBONN_evm.TU.Sc2ySwM_368.3373 Anthoceros agrestis HOM05D004484 ORTHO05D005370 1.7e-131 474.2 691 39.5
CBR_g30081 Chara braunii HOM05D004484 ORTHO05D005370 1.3e-96 358.2 470 40.2
SHI38996 Sapria himalayana HOM05D004484 ORTHO05D005370 4.2e-82 310.1 204 71.6
SHI38095 Sapria himalayana HOM05D004484 ORTHO05D005370 2.7e-73 280.8 187 72.2
Hma1.2p1_0701F.1_g205850 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 4.4e-71 273.5 256 58.6
arahy.Tifrunner.gnm1.ann1.47H85H Arachis hypogaea HOM05D004484 ORTHO05D005370 9.7e-55 219.2 342 40.6
SHI38094 Sapria himalayana HOM05D004484 ORTHO05D005370 2.8e-54 217.6 195 55.9
Glyma.06G243967 Glycine max HOM05D004484 ORTHO05D005370 6.5e-51 206.5 143 65.0
SEGI_20047 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 1.4e-45 188.7 223 44.4
Glyma.17G005802 Glycine max HOM05D004484 ORTHO05D005370 2.1e-41 174.9 192 52.1
Hma1.2p1_0170F.1_g075250 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.2e-39 169.1 202 48.0
SEGI_29754 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 7.5e-39 166.4 116 68.1
QL08p052505 Quercus lobata HOM05D004484 ORTHO05D005370 1.7e-38 165.2 178 56.2
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 7.8e-36 156.4 302 34.4
SHI38995 Sapria himalayana HOM05D004484 ORTHO05D005370 2.3e-35 154.8 127 59.8
Glyma.01G142851 Glycine max HOM05D004484 ORTHO05D005370 5.0e-35 153.7 164 50.0
MCO15G158 Micromonas commoda HOM05D004484 ORTHO05D005370 1.5e-34 152.1 519 27.0
CAN.G594.7 Capsicum annuum HOM05D004484 ORTHO05D005370 3.3e-34 151.0 105 70.5
TPR.G22633 Trifolium pratense HOM05D004484 ORTHO05D005370 9.5e-34 149.4 92 75.0
CAN.G205.22 Capsicum annuum HOM05D004484 ORTHO05D005370 3.7e-30 137.5 96 66.7
SGA_v2.0_scaffold65G22170 Striga asiatica HOM05D004484 ORTHO05D005370 5.6e-26 123.6 250 33.2
Os03g0856200 Oryza sativa ssp. japonica HOM05D004484 ORTHO05D005370 4.7e-25 120.6 97 56.7
Eucgr.I00725 Eucalyptus grandis HOM05D004484 ORTHO05D005370 2.3e-24 118.2 82 65.9
Aa31LG10G5660 Aethionema arabicum HOM05D004484 ORTHO05D005370 2.4e-21 108.2 92 54.3
Solyc01g091430.2 Solanum lycopersicum HOM05D004484 ORTHO05D005370 4.6e-20 104.0 97 57.7
CAN.G279.6 Capsicum annuum HOM05D004484 ORTHO05D005370 1.0e-19 102.8 72 69.4
CAN.G388.14 Capsicum annuum HOM05D004484 ORTHO05D005370 3.9e-19 100.9 69 65.2
PRCOL_00002704 Prasinoderma coloniale HOM05D004484 ORTHO05D005370 1.2e-17 95.9 722 23.3
Solyc01g091440.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 3.1e-16 91.3 133 44.4
Eucgr.E01421 Eucalyptus grandis HOM05D004484 ORTHO05D005370 2.0e-15 88.6 64 68.8
SGA_v2.0_scaffold10G05342 Striga asiatica HOM05D004484 ORTHO05D005370 3.4e-15 87.8 193 33.2
SGA_v2.0_scaffold172G39032 Striga asiatica HOM05D004484 ORTHO05D005370 1.3e-14 85.9 167 35.3
Eucgr.L02075 Eucalyptus grandis HOM05D004484 ORTHO05D005370 2.9e-14 84.7 66 66.7
CAN.G321.48 Capsicum annuum HOM05D001267 ORTHO05D002376 1.7e-11 75.5 62 61.3
SGA_v2.0_scaffold29G12247 Striga asiatica HOM05D004484 ORTHO05D005370 2.3e-11 75.1 235 28.5
arahy.Tifrunner.gnm1.ann1.0F06NC Arachis hypogaea HOM05D004484 ORTHO05D005370 1.5e-10 72.4 50 64.0
TPR.G9848 Trifolium pratense HOM05D000164 ORTHO05D000096 1.2e-09 69.3 55 56.4
Hma1.2p1_1470F.1_g285600 Hydrangea macrophylla HOM05D000467 ORTHO05D011800 8.9e-08 63.2 50 66.0
Cre10.g423800 Chlamydomonas reinhardtii HOM05D004484 ORTHO05D005370 1.3e-06 59.3 79 41.8
Oeu032522.1 Olea europaea HOM05D004484 ORTHO05D005370 6.4e-06 57.0 61 49.2


User provided reference genes

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