Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G009680 Cucumis sativus L. HOM05D004484 ORTHO05D005370 0.0e+00 1359.0 692 100.0
MELO3C006188.2 Cucumis melo HOM05D004484 ORTHO05D005370 0.0e+00 1247.6 657 96.3
ClCG05G002220 Citrullus lanatus HOM05D004484 ORTHO05D005370 0.0e+00 1239.9 692 91.5
Sed0020955 Sechium edule HOM05D004484 ORTHO05D005370 0.0e+00 1191.0 689 86.6
CiPaw.01G262000 Carya illinoinensis HOM05D004484 ORTHO05D005370 5.2e-293 1010.7 689 72.1
QL08p052472 Quercus lobata HOM05D004484 ORTHO05D005370 5.2e-293 1010.7 688 73.0
Dinv32377 Davidia involucrata HOM05D004484 ORTHO05D005370 2.6e-292 1008.4 692 72.1
Haze_16815 Corylus avellana HOM05D004484 ORTHO05D005370 4.1e-290 1001.1 748 67.1
MD07G1121000 Malus domestica HOM05D004484 ORTHO05D005370 1.2e-284 983.0 689 71.7
TWI23G0227 Tripterygium wilfordii HOM05D004484 ORTHO05D005370 5.8e-284 980.7 691 70.0
Prupe.2G145600 Prunus persica HOM05D004484 ORTHO05D005370 2.2e-283 978.8 689 71.1
Hma1.2p1_0086F.1_g044870 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.1e-282 976.5 686 71.3
Ca_19886_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 4.6e-281 971.1 689 69.4
Cc02_g36700 Coffea canephora HOM05D004484 ORTHO05D005370 4.6e-281 971.1 687 70.5
Nitab4.5_0000457g0330 Nicotiana tabacum HOM05D004484 ORTHO05D005370 4.6e-281 971.1 693 68.4
GSVIVG01027610001 Vitis vinifera HOM05D004484 ORTHO05D005370 4.6e-281 971.1 673 70.9
Lj7A528T57 Lonicera japonica HOM05D004484 ORTHO05D005370 7.8e-281 970.3 700 70.6
Potri.014G069700 Populus trichocarpa HOM05D004484 ORTHO05D005370 7.3e-279 963.8 689 70.1
Atru.chr5.309 Acer truncatum HOM05D004484 ORTHO05D005370 1.6e-278 962.6 686 69.0
ECA234G1700 Erigeron canadensis HOM05D004484 ORTHO05D005370 1.6e-278 962.6 693 68.0
Eucgr.E01418 Eucalyptus grandis HOM05D004484 ORTHO05D005370 1.1e-277 959.9 690 69.7
Lj3g0013484 Lotus japonicus HOM05D004484 ORTHO05D005370 2.3e-277 958.7 685 69.3
HanXRQChr16g0520161 Helianthus annuus HOM05D004484 ORTHO05D005370 5.8e-276 954.1 689 67.9
Manes.01G265900 Manihot esculenta HOM05D004484 ORTHO05D005370 7.5e-276 953.7 689 69.1
PSO478G5008 Papaver somniferum HOM05D004484 ORTHO05D005370 7.5e-276 953.7 689 68.8
Oeu055487.1 Olea europaea HOM05D004484 ORTHO05D005370 9.8e-276 953.4 689 68.4
PGR042G0667 Punica granatum HOM05D004484 ORTHO05D005370 2.9e-275 951.8 691 68.7
Thecc.01G376200 Theobroma cacao HOM05D004484 ORTHO05D005370 3.7e-275 951.4 688 67.7
Lalb_Chr13g0291731 Lupinus albus HOM05D004484 ORTHO05D005370 2.4e-274 948.7 689 67.8
Ca_27059_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 4.1e-274 948.0 689 67.8
Medtr4g023560 Medicago truncatula HOM05D004484 ORTHO05D005370 9.2e-274 946.8 689 67.1
PGSC0003DMG400012761 Solanum tuberosum HOM05D004484 ORTHO05D005370 9.2e-274 946.8 693 66.7
MSTRG.20748 Avicennia marina HOM05D004484 ORTHO05D005370 6.0e-273 944.1 690 67.7
Cpa.g.sc18.115 Carica papaya HOM05D004484 ORTHO05D005370 1.0e-272 943.3 690 67.4
Peaxi162Scf00021g01723 Petunia axillaris HOM05D004484 ORTHO05D005370 5.1e-272 941.0 693 66.7
Psat7g233440 Pisum sativum HOM05D004484 ORTHO05D005370 1.5e-271 939.5 689 66.9
CANSAT56G4533 Cannabis sativa HOM05D004484 ORTHO05D005370 1.9e-271 939.1 691 68.2
Ciclev10019016m.g Citrus clementina HOM05D004484 ORTHO05D005370 2.8e-270 935.3 690 68.0
SGA_v2.0_scaffold153G37012 Striga asiatica HOM05D004484 ORTHO05D005370 3.6e-270 934.9 690 67.0
Aqoxy5G00403 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 6.2e-270 934.1 690 67.1
Nn1g01233 Nelumbo nucifera HOM05D004484 ORTHO05D005370 6.2e-270 934.1 686 67.2
CANSAT56G1200 Cannabis sativa HOM05D004484 ORTHO05D005370 1.4e-269 932.9 691 67.7
CAN.G388.13 Capsicum annuum HOM05D004484 ORTHO05D005370 2.3e-269 932.2 689 66.2
CSS0036976 Camellia sinensis var. sinensis HOM05D004484 ORTHO05D005370 3.1e-269 931.8 696 68.2
arahy.Tifrunner.gnm1.ann1.Q9SWB6 Arachis hypogaea HOM05D004484 ORTHO05D005370 4.0e-269 931.4 687 67.8
DCAR_015907 Daucus carota HOM05D004484 ORTHO05D005370 4.0e-269 931.4 689 66.8
FvH4_7g11900 Fragaria vesca HOM05D004484 ORTHO05D005370 8.9e-269 930.2 689 66.6
arahy.Tifrunner.gnm1.ann1.V1M046 Arachis hypogaea HOM05D004484 ORTHO05D005370 2.0e-268 929.1 687 67.8
Nitab4.5_0005372g0070 Nicotiana tabacum HOM05D004484 ORTHO05D005370 2.0e-268 929.1 703 65.4
Solyc01g091350.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 2.6e-268 928.7 693 65.7
FAN01G0628 Fragaria x ananassa HOM05D004484 ORTHO05D005370 3.4e-268 928.3 689 66.2
Migut.B01635 Erythranthe guttata HOM05D004484 ORTHO05D005370 4.4e-268 927.9 690 66.7
TAR629G2468 Trochodendron aralioides HOM05D004484 ORTHO05D005370 5.8e-268 927.5 670 68.1
Sopen01g037090 Solanum pennellii HOM05D004484 ORTHO05D005370 1.3e-267 926.4 693 65.1
arahy.Tifrunner.gnm1.ann1.6K85L9 Arachis hypogaea HOM05D004484 ORTHO05D005370 1.7e-267 926.0 687 67.7
arahy.Tifrunner.gnm1.ann1.HW1IVJ Arachis hypogaea HOM05D004484 ORTHO05D005370 1.7e-267 926.0 687 67.7
MBI12_g10758_MAGBIO Magnolia biondii HOM05D004484 ORTHO05D005370 8.4e-267 923.7 721 66.2
FAN10G1483 Fragaria x ananassa HOM05D004484 ORTHO05D005370 5.4e-266 921.0 689 66.3
Sc02g0002590 Simmondsia chinensis HOM05D004484 ORTHO05D005370 9.2e-266 920.2 673 67.8
FAN06G3319 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.2e-265 919.8 689 66.2
FAN06G1787 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.1e-265 919.1 689 66.2
Glyma.05G125700 Glycine max HOM05D004484 ORTHO05D005370 4.6e-265 917.9 688 67.0
FAN10G2369 Fragaria x ananassa HOM05D004484 ORTHO05D005370 7.8e-265 917.1 689 66.2
EL10Ac1g00900 Beta vulgaris HOM05D004484 ORTHO05D005370 1.1e-263 913.3 710 64.1
Sabra14G0049400 Salix brachista HOM05D004484 ORTHO05D005370 3.3e-263 911.8 703 66.3
Phvul.002G205800 Phaseolus vulgaris HOM05D004484 ORTHO05D005370 9.6e-263 910.2 685 66.1
vmacro13399 Vaccinium macrocarpon HOM05D004484 ORTHO05D005370 1.2e-262 909.8 690 66.8
AUR62004221 Chenopodium quinoa HOM05D004484 ORTHO05D005370 3.6e-262 908.3 721 64.9
Lsat_1_v5_gn_4_43240 Lactuca sativa HOM05D004484 ORTHO05D005370 4.7e-262 907.9 685 65.1
Lalb_Chr12g0208261 Lupinus albus HOM05D004484 ORTHO05D005370 2.0e-260 902.5 689 64.0
Gohir.A11G080700 Gossypium hirsutum HOM05D004484 ORTHO05D005370 4.4e-260 901.4 691 64.4
Gorai.007G091100 Gossypium raimondii HOM05D004484 ORTHO05D005370 2.9e-259 898.7 690 63.9
Gohir.D11G085300 Gossypium hirsutum HOM05D004484 ORTHO05D005370 3.2e-258 895.2 690 63.9
VMungo0251G1206 Vigna mungo HOM05D004484 ORTHO05D005370 3.0e-256 888.6 685 63.9
Ah.13g073490 Amaranthus hybridus HOM05D004484 ORTHO05D005370 3.5e-249 865.1 715 61.7
Cfa001721 Carpinus fangiana HOM05D004484 ORTHO05D005370 4.3e-247 858.2 586 71.7
Aqoxy3G02138 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 1.5e-244 849.7 686 62.2
TPR.G9845 Trifolium pratense HOM05D004484 ORTHO05D005370 3.4e-244 848.6 720 60.4
FAN03G1897 Fragaria x ananassa HOM05D004484 ORTHO05D005370 6.0e-241 837.8 691 61.9
GSVIVG01027609001 Vitis vinifera HOM05D004484 ORTHO05D005370 2.8e-238 828.9 656 64.3
Carub.0001s3716 Capsella rubella HOM05D004484 ORTHO05D005370 7.6e-236 820.8 686 58.9
THA.LOC104817247 Tarenaya hassleriana HOM05D004484 ORTHO05D005370 7.6e-236 820.8 686 60.1
Sp1g35020 Schrenkiella parvula HOM05D004484 ORTHO05D005370 3.8e-235 818.5 677 59.2
AT1G48050 Arabidopsis thaliana HOM05D004484 ORTHO05D005370 6.5e-235 817.8 689 58.9
BcaB04g17469 Brassica carinata HOM05D004484 ORTHO05D005370 4.2e-234 815.1 690 58.8
CARHR037700 Cardamine hirsuta HOM05D004484 ORTHO05D005370 6.0e-233 811.2 689 58.9
BraSC267t45947Z Brassica rapa HOM05D004484 ORTHO05D005370 7.9e-233 810.8 685 58.0
AUR62013627 Chenopodium quinoa HOM05D004484 ORTHO05D005370 3.3e-231 805.4 705 60.9
BcaC07g37180 Brassica carinata HOM05D004484 ORTHO05D005370 1.3e-230 803.5 689 57.8
BolC8t47375H Brassica oleracea HOM05D004484 ORTHO05D005370 8.2e-230 800.8 685 57.7
C08p05620 Brassica napus HOM05D004484 ORTHO05D005370 1.1e-229 800.4 685 57.7
SHI13523 Sapria himalayana HOM05D004484 ORTHO05D005370 5.9e-228 794.7 664 61.7
AL1G54570 Arabidopsis lyrata HOM05D004484 ORTHO05D005370 4.2e-226 788.5 672 57.7
A08p05330 Brassica napus HOM05D004484 ORTHO05D005370 2.3e-224 782.7 665 57.6
Hund27347 Selenicereus undatus HOM05D004484 ORTHO05D005370 1.5e-215 753.4 606 63.5
HPP92_027818 Vanilla planifolia HOM05D004484 ORTHO05D005370 2.4e-213 746.1 689 56.7
Zm00001eb064930 Zea mays HOM05D004484 ORTHO05D005370 3.1e-213 745.7 675 56.7
COL.COLO4_07018 Corchorus olitorius HOM05D004484 ORTHO05D005370 7.7e-212 741.1 554 66.4
arahy.Tifrunner.gnm1.ann1.5WGS6V Arachis hypogaea HOM05D004484 ORTHO05D005370 6.7e-200 701.4 659 56.4
arahy.Tifrunner.gnm1.ann1.03ZR4A Arachis hypogaea HOM05D004484 ORTHO05D005370 1.5e-199 700.3 716 53.2
COL.COLO4_12548 Corchorus olitorius HOM05D004484 ORTHO05D005370 2.6e-199 699.5 711 51.2
arahy.Tifrunner.gnm1.ann1.5492A7 Arachis hypogaea HOM05D004484 ORTHO05D005370 1.5e-191 673.7 673 54.5
Potri.002G148200 Populus trichocarpa HOM05D004484 ORTHO05D005370 2.4e-189 666.4 490 67.8
unitig_749.g13780 Utricularia gibba HOM05D004484 ORTHO05D005370 6.8e-184 648.3 574 58.4
arahy.Tifrunner.gnm1.ann1.T9R8PC Arachis hypogaea HOM05D004484 ORTHO05D005370 8.8e-184 647.9 690 52.6
Pp3c22_11100 Physcomitrium patens HOM05D004484 ORTHO05D005370 1.2e-183 647.5 688 49.1
Hma1.2p1_0086F.1_g044880 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.5e-183 647.1 459 71.7
Lj9C569T11 Lonicera japonica HOM05D004484 ORTHO05D005370 1.1e-181 641.0 466 67.8
Thhalv10011351m.g Eutrema salsugineum HOM05D004484 ORTHO05D005370 1.9e-178 630.2 668 50.6
ATR0049G077 Amborella trichopoda HOM05D004484 ORTHO05D005370 3.5e-172 609.4 458 63.8
CDE04G3156 Ceratophyllum demersum HOM05D004484 ORTHO05D005370 5.9e-172 608.6 675 49.2
Aa31LG10G5650 Aethionema arabicum HOM05D004484 ORTHO05D005370 5.6e-170 602.1 585 54.4
SMO367G0514 Selaginella moellendorffii HOM05D004484 ORTHO05D005370 3.6e-169 599.4 691 45.4
PGR119G1536 Punica granatum HOM05D004484 ORTHO05D005370 3.7e-166 589.3 516 58.5
Mapoly0129s0012 Marchantia polymorpha HOM05D004484 ORTHO05D005370 1.1e-162 577.8 633 46.8
RcHm_v2.0_Chr1g0350581 Rosa chinensis HOM05D004484 ORTHO05D005370 9.2e-157 558.1 381 71.7
AagrBONN_evm.TU.Sc2ySwM_368.3373 Anthoceros agrestis HOM05D004484 ORTHO05D005370 4.9e-142 509.2 685 41.0
CBR_g30081 Chara braunii HOM05D004484 ORTHO05D005370 9.0e-112 408.7 495 43.6
RcHm_v2.0_Chr1g0350571 Rosa chinensis HOM05D004484 ORTHO05D005370 5.9e-103 379.4 295 65.1
SHI38996 Sapria himalayana HOM05D004484 ORTHO05D005370 2.2e-81 307.8 228 67.5
Hma1.2p1_0701F.1_g205850 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 2.0e-74 284.6 268 57.5
SHI38095 Sapria himalayana HOM05D004484 ORTHO05D005370 9.8e-74 282.3 190 72.6
SHI38094 Sapria himalayana HOM05D004484 ORTHO05D005370 7.5e-66 256.1 211 60.2
arahy.Tifrunner.gnm1.ann1.47H85H Arachis hypogaea HOM05D004484 ORTHO05D005370 2.7e-55 221.1 342 40.1
Glyma.06G243967 Glycine max HOM05D004484 ORTHO05D005370 6.2e-52 209.9 144 67.4
Glyma.01G142851 Glycine max HOM05D004484 ORTHO05D005370 6.8e-51 206.5 164 61.6
MCO15G158 Micromonas commoda HOM05D004484 ORTHO05D005370 6.8e-43 179.9 527 28.5
SEGI_20047 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 5.8e-42 176.8 216 43.5
Glyma.17G005802 Glycine max HOM05D004484 ORTHO05D005370 3.7e-41 174.1 193 51.8
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 3.2e-40 171.0 252 42.1
Hma1.2p1_0170F.1_g075250 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 2.1e-39 168.3 202 48.5
SHI38995 Sapria himalayana HOM05D004484 ORTHO05D005370 6.6e-38 163.3 126 63.5
CAN.G594.7 Capsicum annuum HOM05D004484 ORTHO05D005370 6.8e-35 153.3 105 69.5
SEGI_29754 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 8.9e-35 152.9 116 63.8
QL08p052505 Quercus lobata HOM05D004484 ORTHO05D005370 2.2e-33 148.3 171 49.1
TPR.G22633 Trifolium pratense HOM05D004484 ORTHO05D005370 6.0e-31 140.2 92 68.5
CAN.G205.22 Capsicum annuum HOM05D004484 ORTHO05D005370 1.0e-30 139.4 96 68.8
SGA_v2.0_scaffold65G22170 Striga asiatica HOM05D004484 ORTHO05D005370 2.5e-29 134.8 201 40.3
Os03g0856200 Oryza sativa ssp. japonica HOM05D004484 ORTHO05D005370 2.8e-28 131.3 97 61.9
Eucgr.I00725 Eucalyptus grandis HOM05D004484 ORTHO05D005370 8.1e-28 129.8 82 74.4
Aa31LG10G5660 Aethionema arabicum HOM05D004484 ORTHO05D005370 4.4e-26 124.0 94 60.6
CAN.G279.6 Capsicum annuum HOM05D004484 ORTHO05D005370 6.2e-20 103.6 72 69.4
Solyc01g091430.2 Solanum lycopersicum HOM05D004484 ORTHO05D005370 3.1e-19 101.3 101 51.5
CAN.G388.14 Capsicum annuum HOM05D004484 ORTHO05D005370 1.3e-17 95.9 69 62.3
Glyma.06G243934 Glycine max HOM05D004484 ORTHO05D005370 1.7e-17 95.5 81 54.3
Glyma.06G244302 Glycine max HOM05D004484 ORTHO05D005370 3.8e-17 94.4 148 40.5
SGA_v2.0_scaffold10G05342 Striga asiatica HOM05D004484 ORTHO05D005370 1.1e-16 92.8 191 34.6
SGA_v2.0_scaffold172G39032 Striga asiatica HOM05D004484 ORTHO05D005370 4.2e-16 90.9 180 35.6
Solyc01g091440.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 1.2e-15 89.4 133 42.1
TPR.G9848 Trifolium pratense HOM05D000164 ORTHO05D000096 2.3e-14 85.1 55 70.9
SGA_v2.0_scaffold29G12247 Striga asiatica HOM05D004484 ORTHO05D005370 2.5e-13 81.6 186 33.3
Eucgr.E01421 Eucalyptus grandis HOM05D004484 ORTHO05D005370 1.3e-12 79.3 66 59.1
PRCOL_00002704 Prasinoderma coloniale HOM05D004484 ORTHO05D005370 2.1e-12 78.6 264 28.4
CAN.G321.48 Capsicum annuum HOM05D001267 ORTHO05D002376 4.8e-12 77.4 62 61.3
arahy.Tifrunner.gnm1.ann1.0F06NC Arachis hypogaea HOM05D004484 ORTHO05D005370 1.4e-11 75.9 48 68.8
Eucgr.L02075 Eucalyptus grandis HOM05D004484 ORTHO05D005370 1.2e-10 72.8 64 57.8
Cre10.g423800 Chlamydomonas reinhardtii HOM05D004484 ORTHO05D005370 5.8e-10 70.5 563 21.5
Hma1.2p1_1470F.1_g285600 Hydrangea macrophylla HOM05D000467 ORTHO05D011800 1.7e-09 68.9 48 68.8
AagrBONN_evm.TU.Sc2ySwM_368.3370 Anthoceros agrestis HOM05D004484 ORTHO05D005370 6.4e-09 67.0 111 31.5
Oeu032522.1 Olea europaea HOM05D004484 ORTHO05D005370 1.3e-06 59.3 47 63.8


User provided reference genes

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