Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc55.68 Carica papaya HOM05D000113 ORTHO05D015799 1.4e-201 706.1 351 100.0
THA.LOC104798664 Tarenaya hassleriana HOM05D000113 ORTHO05D005496 3.8e-66 256.1 328 44.8
Thecc.01G095200 Theobroma cacao HOM05D000113 ORTHO05D005496 8.2e-61 238.4 331 42.6
Duzib147G1158 Durio zibethinus HOM05D000113 ORTHO05D005496 6.1e-56 222.2 313 41.2
CiPaw.03G146200 Carya illinoinensis HOM05D000113 ORTHO05D005496 1.8e-55 220.7 267 44.9
Aa31LG3G16810 Aethionema arabicum HOM05D000113 ORTHO05D005496 2.3e-55 220.3 332 42.5
Lj6g0026739 Lotus japonicus HOM05D000113 ORTHO05D005496 2.0e-54 217.2 292 42.1
AT5G10370 Arabidopsis thaliana HOM05D000113 ORTHO05D005496 2.6e-54 216.9 343 42.0
AL6G20870 Arabidopsis lyrata HOM05D000113 ORTHO05D005496 4.4e-54 216.1 332 39.8
Duzib264G0979 Durio zibethinus HOM05D000113 ORTHO05D005496 1.3e-53 214.5 328 38.7
A03p04500 Brassica napus HOM05D000113 ORTHO05D005496 3.7e-53 213.0 282 43.6
AT4G01020 Arabidopsis thaliana HOM05D000113 ORTHO05D005496 4.8e-53 212.6 327 40.7
Carub.0006s0884 Capsella rubella HOM05D000113 ORTHO05D005496 4.8e-53 212.6 324 39.2
BraA03t09794Z Brassica rapa HOM05D000113 ORTHO05D005496 6.3e-53 212.2 282 43.6
C03p05000 Brassica napus HOM05D000113 ORTHO05D005496 8.2e-53 211.8 323 41.2
Ciclev10024688m.g Citrus clementina HOM05D000113 ORTHO05D005496 1.8e-52 210.7 301 41.2
Gorai.011G111000 Gossypium raimondii HOM05D000113 ORTHO05D005496 2.4e-52 210.3 247 44.1
BcaB01g05540 Brassica carinata HOM05D000113 ORTHO05D005496 4.1e-52 209.5 322 41.3
BolC3t13030H Brassica oleracea HOM05D000113 ORTHO05D005496 3.5e-51 206.5 322 40.7
Gohir.D10G101300 Gossypium hirsutum HOM05D000113 ORTHO05D005496 3.5e-51 206.5 247 43.7
Hma1.2p1_0225F.1_g094940 Hydrangea macrophylla HOM05D000113 ORTHO05D015799 3.5e-51 206.5 276 40.9
BcaC04g19309 Brassica carinata HOM05D000113 ORTHO05D005496 4.5e-51 206.1 273 44.3
CiPaw.04G104000 Carya illinoinensis HOM05D000113 ORTHO05D005496 5.9e-51 205.7 266 41.0
C09p67040 Brassica napus HOM05D000113 ORTHO05D005496 1.7e-50 204.1 275 44.0
BolC9t59477H Brassica oleracea HOM05D000113 ORTHO05D005496 1.7e-50 204.1 275 44.0
Gorai.003G041600 Gossypium raimondii HOM05D000113 ORTHO05D005496 2.2e-50 203.8 295 39.7
Thhalv10012419m.g Eutrema salsugineum HOM05D000113 ORTHO05D005496 2.9e-50 203.4 282 42.6
Medtr3g086770 Medicago truncatula HOM05D000113 ORTHO05D005496 2.9e-50 203.4 292 39.4
Lj5g0010678 Lotus japonicus HOM05D000113 ORTHO05D005496 5.0e-50 202.6 287 41.8
Gohir.A10G087100 Gossypium hirsutum HOM05D000113 ORTHO05D005496 6.5e-50 202.2 247 42.5
Gohir.D03G040800 Gossypium hirsutum HOM05D000113 ORTHO05D005496 6.5e-50 202.2 295 39.7
Psat0s1386g0040 Pisum sativum HOM05D000113 ORTHO05D005496 6.5e-50 202.2 289 40.1
Sp6g33080 Schrenkiella parvula HOM05D000113 ORTHO05D005496 1.5e-49 201.1 328 38.4
Atru.chr3.1340 Acer truncatum HOM05D000113 ORTHO05D005496 1.9e-49 200.7 268 42.5
MD15G1318100 Malus domestica HOM05D000113 ORTHO05D005496 9.4e-49 198.4 288 42.4
Hund14100 Selenicereus undatus HOM05D000113 ORTHO05D005496 2.1e-48 197.2 272 37.9
A10p27230 Brassica napus HOM05D000113 ORTHO05D005496 4.7e-48 196.1 268 42.9
Ca_16506_v3 Cicer arietinum L. HOM05D000113 ORTHO05D005496 1.4e-47 194.5 298 39.9
Ca_30638_v3 Cicer arietinum L. HOM05D000113 ORTHO05D005496 1.4e-47 194.5 298 39.9
TWI77G0223 Tripterygium wilfordii HOM05D000113 ORTHO05D005496 1.4e-47 194.5 312 39.1
MBI02_g10702_MAGBIO Magnolia biondii HOM05D000113 ORTHO05D005496 3.0e-47 193.4 249 42.2
Nn5g29734 Nelumbo nucifera HOM05D000113 ORTHO05D005496 4.0e-47 193.0 245 42.0
Aqoxy4G02794 Aquilegia oxysepala HOM05D000113 ORTHO05D005496 5.2e-47 192.6 321 34.0
Lj2C539T1 Lonicera japonica HOM05D000113 ORTHO05D005496 3.3e-46 189.9 259 38.6
Sc03g0000190 Simmondsia chinensis HOM05D000113 ORTHO05D005496 4.4e-46 189.5 286 38.1
BraA10t44773Z Brassica rapa HOM05D000113 ORTHO05D005496 7.4e-46 188.7 322 37.3
Cfa002587 Carpinus fangiana HOM05D000113 ORTHO05D005496 7.4e-46 188.7 295 40.0
CANSAT01G0367 Cannabis sativa HOM05D000113 ORTHO05D005496 2.2e-45 187.2 253 39.5
Haze_24829 Corylus avellana HOM05D000113 ORTHO05D005496 4.8e-45 186.0 275 40.0
Actinidia06536 Actinidia chinensis HOM05D000113 ORTHO05D005496 6.3e-45 185.7 271 40.2
Haze_24824 Corylus avellana HOM05D000113 ORTHO05D005496 1.4e-44 184.5 273 40.3
MD01G1036600 Malus domestica HOM05D000113 ORTHO05D005496 1.4e-44 184.5 291 41.2
TAR628G1021 Trochodendron aralioides HOM05D000113 ORTHO05D005496 3.1e-44 183.3 255 44.7
Glyma.18G014800 Glycine max HOM05D000113 ORTHO05D005496 4.1e-44 183.0 316 38.0
Potri.005G071500 Populus trichocarpa HOM05D000113 ORTHO05D005496 5.3e-44 182.6 265 41.9
QL06p047959 Quercus lobata HOM05D000113 ORTHO05D005496 5.3e-44 182.6 310 38.4
ATR0807G003 Amborella trichopoda HOM05D000113 ORTHO05D005496 7.0e-44 182.2 251 41.8
BcaB06g26888 Brassica carinata HOM05D000113 ORTHO05D005496 9.1e-44 181.8 229 42.8
Nn5g29984 Nelumbo nucifera HOM05D000113 ORTHO05D005496 1.6e-43 181.0 247 42.9
CSS0043991 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D005496 7.7e-43 178.7 266 40.6
Nitab4.5_0005930g0010 Nicotiana tabacum HOM05D000113 ORTHO05D005496 1.7e-42 177.6 265 38.1
COL.COLO4_27299 Corchorus olitorius HOM05D000113 ORTHO05D005496 2.2e-42 177.2 269 40.5
Sabra05G0058500 Salix brachista HOM05D000113 ORTHO05D005496 2.9e-42 176.8 267 41.2
vmacro12989 Vaccinium macrocarpon HOM05D000113 ORTHO05D005496 5.0e-42 176.0 257 37.0
Phvul.001G254100 Phaseolus vulgaris HOM05D000113 ORTHO05D005496 6.5e-42 175.6 317 37.9
SalBow1G6336 Salvia bowleyana HOM05D000113 ORTHO05D005496 8.5e-42 175.3 282 39.0
Nitab4.5_0000241g0130 Nicotiana tabacum HOM05D000113 ORTHO05D005496 1.9e-41 174.1 271 37.3
FAN26G3479 Fragaria x ananassa HOM05D000113 ORTHO05D005496 5.5e-41 172.6 303 35.6
arahy.Tifrunner.gnm1.ann1.KS9FMV Arachis hypogaea HOM05D000113 ORTHO05D005496 7.2e-41 172.2 318 36.5
Prupe.6G193800 Prunus persica HOM05D000113 ORTHO05D005496 7.2e-41 172.2 225 42.2
PGSC0003DMG400023635 Solanum tuberosum HOM05D000113 ORTHO05D005496 7.2e-41 172.2 263 36.5
PGR102G0466 Punica granatum HOM05D000113 ORTHO05D005496 1.6e-40 171.0 296 36.8
RcHm_v2.0_Chr2g0112281 Rosa chinensis HOM05D000113 ORTHO05D005496 1.6e-40 171.0 286 37.8
Solyc04g014210.3 Solanum lycopersicum HOM05D000113 ORTHO05D005496 3.6e-40 169.9 270 36.7
Sopen04g006310 Solanum pennellii HOM05D000113 ORTHO05D005496 3.6e-40 169.9 306 34.6
ClCG10G008390 Citrullus lanatus HOM05D000113 ORTHO05D005496 6.1e-40 169.1 302 35.4
HanXRQChr15g0469421 Helianthus annuus HOM05D000113 ORTHO05D005496 8.0e-40 168.7 247 40.1
Migut.H02323 Erythranthe guttata HOM05D000113 ORTHO05D005496 1.4e-39 167.9 290 36.6
arahy.Tifrunner.gnm1.ann1.FHUE8B Arachis hypogaea HOM05D000113 ORTHO05D005496 1.8e-39 167.5 312 37.8
FAN19G2146 Fragaria x ananassa HOM05D000113 ORTHO05D005496 1.8e-39 167.5 303 36.3
FvH4_1g20200 Fragaria vesca HOM05D000113 ORTHO05D005496 2.3e-39 167.2 303 36.0
FAN23G0752 Fragaria x ananassa HOM05D000113 ORTHO05D005496 4.0e-39 166.4 303 35.0
FAN28G1056 Fragaria x ananassa HOM05D000113 ORTHO05D005496 1.2e-38 164.9 297 35.0
Actinidia00283 Actinidia chinensis HOM05D000298 ORTHO05D015799 1.5e-38 164.5 274 36.1
BcaB08g37113 Brassica carinata HOM05D000113 ORTHO05D005496 4.4e-38 162.9 253 39.1
MELO3C018998.2 Cucumis melo HOM05D000113 ORTHO05D005496 9.8e-38 161.8 286 35.0
Lalb_Chr23g0277561 Lupinus albus HOM05D000113 ORTHO05D005496 9.8e-38 161.8 277 35.7
Sed0023847 Sechium edule HOM05D000113 ORTHO05D005496 1.3e-37 161.4 256 36.7
Lsat_1_v5_gn_5_44701 Lactuca sativa HOM05D000113 ORTHO05D005496 1.7e-37 161.0 247 35.2
MSTRG.2587 Avicennia marina HOM05D000113 ORTHO05D005496 2.8e-37 160.2 257 35.4
MBI06_g03318_MAGBIO Magnolia biondii HOM05D000113 ORTHO05D005496 2.8e-37 160.2 247 36.8
SGA_v2.0_scaffold108G30899 Striga asiatica HOM05D000113 ORTHO05D005496 3.7e-37 159.8 252 36.5
VMungo1383G1146 Vigna mungo HOM05D000113 ORTHO05D005496 3.7e-37 159.8 276 37.3
Dinv24167 Davidia involucrata HOM05D000113 ORTHO05D005496 4.8e-37 159.5 249 37.8
ECA246G2046 Erigeron canadensis HOM05D000004 ORTHO05D000002 4.5e-35 152.9 280 35.0
PSO700G0222 Papaver somniferum HOM05D000113 ORTHO05D005496 1.0e-34 151.8 256 35.2
SGA_v2.0_scaffold421G51436 Striga asiatica HOM05D000113 ORTHO05D005496 2.2e-34 150.6 305 33.8
CAN.G525.46 Capsicum annuum HOM05D000113 ORTHO05D005496 5.0e-34 149.4 304 31.6
Lalb_Chr08g0230951 Lupinus albus HOM05D000113 ORTHO05D005496 6.5e-34 149.1 274 33.6
BcaB06g26904 Brassica carinata HOM05D000113 ORTHO05D015799 8.5e-34 148.7 189 43.4
Rhsim10G0168800 Rhododendron simsii HOM05D000113 ORTHO05D005496 1.9e-33 147.5 252 33.7
Ah.02g126230 Amaranthus hybridus HOM05D000113 ORTHO05D005496 3.2e-33 146.7 257 35.4
Peaxi162Scf00237g01219 Petunia axillaris HOM05D000113 ORTHO05D005496 1.2e-32 144.8 253 32.8
PSO761G0046 Papaver somniferum HOM05D000113 ORTHO05D005496 1.4e-31 141.4 259 33.6
HPP92_010964 Vanilla planifolia HOM05D000113 ORTHO05D005496 1.8e-31 141.0 297 33.3
AUR62003267 Chenopodium quinoa HOM05D000113 ORTHO05D005496 2.3e-31 140.6 293 29.4
EL10Ac6g14815 Beta vulgaris HOM05D000113 ORTHO05D005496 3.0e-31 140.2 261 33.0
BcaB06g26897 Brassica carinata HOM05D000113 ORTHO05D005496 3.0e-31 140.2 169 45.6
Medtr3g014030 Medicago truncatula HOM05D000113 ORTHO05D005496 4.0e-31 139.8 297 34.0
Sopen11g005090 Solanum pennellii HOM05D000113 ORTHO05D005496 4.0e-31 139.8 245 32.7
Solyc11g010310.2 Solanum lycopersicum HOM05D000113 ORTHO05D005496 6.8e-31 139.0 245 33.1
AUR62027200 Chenopodium quinoa HOM05D000113 ORTHO05D005496 8.8e-31 138.7 292 30.5
Cc07_g14540 Coffea canephora HOM05D000113 ORTHO05D005496 8.8e-31 138.7 183 36.1
CSS0007444 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D005496 1.2e-30 138.3 248 36.3
CSS0032648 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D005496 1.2e-30 138.3 248 36.3
Peaxi162Scf00569g00315 Petunia axillaris HOM05D000113 ORTHO05D005496 1.5e-30 137.9 248 33.9
TPR.G1396 Trifolium pratense HOM05D000113 ORTHO05D005496 3.4e-30 136.7 287 32.8
TPR.G30542 Trifolium pratense HOM05D000113 ORTHO05D005496 3.4e-30 136.7 180 41.1
CSS0007191 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D005496 1.3e-29 134.8 225 36.9
DCAR_014198 Daucus carota HOM05D000113 ORTHO05D005496 2.8e-29 133.7 257 34.2
Hma1.2p1_0019F.1_g013860 Hydrangea macrophylla HOM05D000113 ORTHO05D015799 8.3e-29 132.1 252 34.1
Manes.10G103500 Manihot esculenta HOM05D000113 ORTHO05D005496 2.7e-27 127.1 223 35.4
PGSC0003DMG400016218 Solanum tuberosum HOM05D000113 ORTHO05D005496 2.9e-26 123.6 183 37.2
Sabra17G0036800 Salix brachista HOM05D000113 ORTHO05D015799 3.3e-25 120.2 206 35.0
Sabra17G0042200 Salix brachista HOM05D000113 ORTHO05D015799 3.3e-25 120.2 206 35.0
CDE10G1326 Ceratophyllum demersum HOM05D000113 ORTHO05D015799 1.0e-23 115.2 248 28.6
unitig_899.g14557 Utricularia gibba HOM05D000113 ORTHO05D005496 1.4e-23 114.8 258 30.6
CDE10G1216 Ceratophyllum demersum HOM05D000113 ORTHO05D005496 2.3e-23 114.0 246 28.5
Dinv09001 Davidia involucrata HOM05D000113 ORTHO05D005496 1.3e-21 108.2 314 28.3
CsaV3_4G009030 Cucumis sativus L. HOM05D000113 ORTHO05D005496 2.3e-18 97.4 138 38.4
Nitab4.5_0005401g0060 Nicotiana tabacum HOM05D000113 ORTHO05D015799 1.3e-13 81.6 215 27.4
Mapoly0046s0024 Marchantia polymorpha HOM05D000113 ORTHO05D005496 1.1e-12 78.6 200 30.0


User provided reference genes

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