Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc26.243 Carica papaya HOM05D004376 ORTHO05D005304 4.7e-194 681.0 347 100.0
Manes.18G008300 Manihot esculenta HOM05D004376 ORTHO05D005304 6.8e-100 368.2 329 61.1
Potri.005G247000 Populus trichocarpa HOM05D004376 ORTHO05D005304 5.4e-97 358.6 323 61.9
QL02p013385 Quercus lobata HOM05D004376 ORTHO05D005304 1.5e-94 350.5 305 62.3
ClCG05G015300 Citrullus lanatus HOM05D004376 ORTHO05D005304 2.8e-93 346.3 326 60.4
Sabra05G0190800 Salix brachista HOM05D004376 ORTHO05D005304 6.1e-93 345.1 328 59.5
TWI36G0200 Tripterygium wilfordii HOM05D004376 ORTHO05D005304 8.0e-93 344.7 300 62.3
Dinv31908 Davidia involucrata HOM05D004376 ORTHO05D005304 1.4e-92 344.0 317 61.2
Cfa014026 Carpinus fangiana HOM05D004376 ORTHO05D005304 2.3e-92 343.2 305 61.3
Lalb_Chr07g0179761 Lupinus albus HOM05D004376 ORTHO05D005304 2.3e-92 343.2 309 59.5
Thecc.10G086100 Theobroma cacao HOM05D004376 ORTHO05D005304 3.1e-92 342.8 323 60.7
arahy.Tifrunner.gnm1.ann1.CAQ3WI Arachis hypogaea HOM05D004376 ORTHO05D005304 4.0e-92 342.4 244 70.1
Haze_22730 Corylus avellana HOM05D004376 ORTHO05D005304 4.0e-92 342.4 312 60.3
Potri.002G014400 Populus trichocarpa HOM05D004376 ORTHO05D005304 4.0e-92 342.4 329 59.0
MELO3C017001.2 Cucumis melo HOM05D004376 ORTHO05D005304 5.2e-92 342.0 301 62.8
Ciclev10000838m.g Citrus clementina HOM05D004376 ORTHO05D005304 6.8e-92 341.7 313 59.4
arahy.Tifrunner.gnm1.ann1.B15N49 Arachis hypogaea HOM05D004376 ORTHO05D005304 1.5e-91 340.5 245 69.4
Prupe.1G357900 Prunus persica HOM05D004376 ORTHO05D005304 2.0e-91 340.1 307 59.6
VMungo1215G0405 Vigna mungo HOM05D004376 ORTHO05D005304 1.3e-90 337.4 308 60.1
COL.COLO4_36544 Corchorus olitorius HOM05D004376 ORTHO05D005304 1.7e-90 337.0 333 57.1
Glyma.02G202300 Glycine max HOM05D004376 ORTHO05D005304 2.9e-90 336.3 309 60.5
TAR628G0340 Trochodendron aralioides HOM05D004376 ORTHO05D005304 1.9e-89 333.6 228 72.8
GSVIVG01008716001 Vitis vinifera HOM05D004376 ORTHO05D005304 1.9e-89 333.6 318 58.8
Eucgr.F01708 Eucalyptus grandis HOM05D004376 ORTHO05D005304 2.4e-89 333.2 321 58.3
CSS0003340 Camellia sinensis var. sinensis HOM05D004376 ORTHO05D005304 9.2e-89 331.3 324 57.4
CSS0022497 Camellia sinensis var. sinensis HOM05D004376 ORTHO05D005304 9.2e-89 331.3 324 57.4
CiPaw.07G142200 Carya illinoinensis HOM05D004376 ORTHO05D005304 9.2e-89 331.3 308 59.4
CsaV3_4G037020 Cucumis sativus L. HOM05D004376 ORTHO05D005304 9.2e-89 331.3 301 60.1
Glyma.19G018000 Glycine max HOM05D004376 ORTHO05D005304 9.2e-89 331.3 313 58.5
PGR083G0927 Punica granatum HOM05D004376 ORTHO05D005304 3.5e-88 329.3 267 65.9
Sed0022390 Sechium edule HOM05D004376 ORTHO05D005304 6.0e-88 328.6 304 60.9
Phvul.003G157400 Phaseolus vulgaris HOM05D004376 ORTHO05D005304 7.8e-88 328.2 311 58.8
Gohir.A06G168500 Gossypium hirsutum HOM05D004376 ORTHO05D005304 1.3e-87 327.4 224 72.8
Duzib106G0676 Durio zibethinus HOM05D004376 ORTHO05D005304 3.0e-87 326.2 310 59.4
RcHm_v2.0_Chr6g0303831 Rosa chinensis HOM05D004376 ORTHO05D005304 3.0e-87 326.2 194 80.9
MSTRG.25283 Avicennia marina HOM05D004376 ORTHO05D005304 5.0e-87 325.5 328 56.7
SalBow7G0439 Salvia bowleyana HOM05D004376 ORTHO05D005304 6.6e-87 325.1 305 58.0
Lj4g0015297 Lotus japonicus HOM05D004376 ORTHO05D005304 8.6e-87 324.7 310 56.8
Lj4C16G12 Lonicera japonica HOM05D004376 ORTHO05D005304 1.1e-86 324.3 315 56.5
vmacro04385 Vaccinium macrocarpon HOM05D004376 ORTHO05D005304 1.5e-86 323.9 299 61.5
THA.LOC104813770 Tarenaya hassleriana HOM05D004376 ORTHO05D005304 1.9e-86 323.6 351 54.1
TPR.G4183 Trifolium pratense HOM05D004376 ORTHO05D005304 2.5e-86 323.2 318 56.9
MD15G1005400 Malus domestica HOM05D004376 ORTHO05D005304 3.3e-86 322.8 276 62.3
FAN15G0873 Fragaria x ananassa HOM05D004376 ORTHO05D005304 4.3e-86 322.4 222 73.9
Hund17272 Selenicereus undatus HOM05D004376 ORTHO05D005304 5.6e-86 322.0 272 62.1
Oeu021477.1 Olea europaea HOM05D004376 ORTHO05D005304 7.3e-86 321.6 318 57.5
FAN27G0101 Fragaria x ananassa HOM05D004376 ORTHO05D005304 9.5e-86 321.2 222 73.0
Psat4g008680 Pisum sativum HOM05D004376 ORTHO05D005304 2.1e-85 320.1 282 58.9
Gohir.D06G176200 Gossypium hirsutum HOM05D004376 ORTHO05D005304 3.6e-85 319.3 224 70.5
Lsat_1_v5_gn_2_5561 Lactuca sativa HOM05D004376 ORTHO05D005304 6.2e-85 318.5 277 61.0
Gorai.010G207100 Gossypium raimondii HOM05D004376 ORTHO05D005304 3.1e-84 316.2 202 74.8
MBI05_g12852_MAGBIO Magnolia biondii HOM05D004376 ORTHO05D005304 4.0e-84 315.8 219 69.9
Lalb_Chr12g0198601 Lupinus albus HOM05D004376 ORTHO05D005304 8.9e-84 314.7 297 57.6
Medtr4g131220 Medicago truncatula HOM05D004376 ORTHO05D005304 8.9e-84 314.7 320 54.1
Medtr4g131270 Medicago truncatula HOM05D004376 ORTHO05D005304 1.5e-83 313.9 320 54.1
Medtr4g131200 Medicago truncatula HOM05D004376 ORTHO05D005304 2.0e-83 313.5 320 54.1
PGSC0003DMG400009961 Solanum tuberosum HOM05D004376 ORTHO05D005304 2.0e-83 313.5 271 61.6
CANSAT25G0081 Cannabis sativa HOM05D004376 ORTHO05D005304 2.6e-83 313.2 322 55.6
ECA238G2008 Erigeron canadensis HOM05D004376 ORTHO05D005304 2.6e-83 313.2 323 56.3
Sopen04g035720 Solanum pennellii HOM05D004376 ORTHO05D005304 4.4e-83 312.4 243 63.8
CAN.G311.86 Capsicum annuum HOM05D004376 ORTHO05D005304 9.8e-83 311.2 261 59.8
Cc10_g00930 Coffea canephora HOM05D004376 ORTHO05D005304 9.8e-83 311.2 305 55.4
Migut.C00912 Erythranthe guttata HOM05D004376 ORTHO05D005304 9.8e-83 311.2 276 58.3
HPP92_021052 Vanilla planifolia HOM05D004376 ORTHO05D005304 1.7e-82 310.5 210 70.5
DCAR_023004 Daucus carota HOM05D004376 ORTHO05D005304 3.7e-82 309.3 334 55.1
PGR083G1997 Punica granatum HOM05D004376 ORTHO05D005304 1.1e-81 307.8 220 71.4
Nn5g30880 Nelumbo nucifera HOM05D004376 ORTHO05D005304 2.4e-81 306.6 300 58.0
Ah.05g171420 Amaranthus hybridus HOM05D004376 ORTHO05D005304 4.1e-81 305.8 343 51.6
SHI08024 Sapria himalayana HOM05D004376 ORTHO05D005304 7.1e-81 305.1 224 67.9
Zm00001eb250100 Zea mays HOM05D004376 ORTHO05D005304 1.2e-80 304.3 286 54.2
SGA_v2.0_scaffold351G49653 Striga asiatica HOM05D004376 ORTHO05D005304 2.1e-80 303.5 336 51.8
Aa31LG7G4710 Aethionema arabicum HOM05D004376 ORTHO05D005304 6.0e-80 302.0 225 65.8
Aqoxy6G01883 Aquilegia oxysepala HOM05D004376 ORTHO05D005304 6.0e-80 302.0 199 73.4
unitig_26.g9890 Utricularia gibba HOM05D004376 ORTHO05D005304 6.0e-80 302.0 326 54.0
EL10Ac1g00494 Beta vulgaris HOM05D004376 ORTHO05D005304 1.3e-79 300.8 198 73.2
PSO541G0445 Papaver somniferum HOM05D004376 ORTHO05D005304 1.3e-79 300.8 297 55.6
CDE06G1209 Ceratophyllum demersum HOM05D004376 ORTHO05D005304 3.0e-79 299.7 268 59.3
Carub.0001s1987 Capsella rubella HOM05D004376 ORTHO05D005304 3.9e-79 299.3 299 55.2
PSO675G7961 Papaver somniferum HOM05D004376 ORTHO05D005304 1.1e-78 297.7 242 62.8
SGA_v2.0_scaffold275G46548 Striga asiatica HOM05D004376 ORTHO05D005304 1.1e-78 297.7 254 59.8
HanXRQChr06g0184861 Helianthus annuus HOM05D004376 ORTHO05D005304 1.9e-78 297.0 262 59.9
Carub.0002s2300 Capsella rubella HOM05D004376 ORTHO05D005304 7.3e-78 295.0 254 60.6
AL1G33250 Arabidopsis lyrata HOM05D004376 ORTHO05D005304 9.5e-78 294.7 287 55.7
Sed0015523 Sechium edule HOM05D004376 ORTHO05D005304 1.6e-77 293.9 314 54.1
AL2G36160 Arabidopsis lyrata HOM05D004376 ORTHO05D005304 2.8e-77 293.1 299 54.8
Sp1g18110 Schrenkiella parvula HOM05D004376 ORTHO05D005304 6.2e-77 292.0 340 52.1
AL1G33290 Arabidopsis lyrata HOM05D004376 ORTHO05D005304 8.1e-77 291.6 336 50.9
Os02g0668400 Oryza sativa ssp. japonica HOM05D004376 ORTHO05D005304 8.1e-77 291.6 196 69.9
AT1G20370 Arabidopsis thaliana HOM05D004376 ORTHO05D005304 2.3e-76 290.0 295 55.9
AT1G76120 Arabidopsis thaliana HOM05D004376 ORTHO05D005304 2.3e-76 290.0 191 72.3
Sp5g31240 Schrenkiella parvula HOM05D004376 ORTHO05D005304 3.1e-76 289.7 203 69.5
BcaC08g47105 Brassica carinata HOM05D004376 ORTHO05D005304 6.8e-76 288.5 194 71.1
A06p16450 Brassica napus HOM05D004376 ORTHO05D005304 1.2e-75 287.7 276 56.5
BraA06t24749Z Brassica rapa HOM05D004376 ORTHO05D005304 1.2e-75 287.7 276 56.5
BolC5t30599H Brassica oleracea HOM05D004376 ORTHO05D005304 2.6e-75 286.6 276 56.2
AUR62019106 Chenopodium quinoa HOM05D004376 ORTHO05D005304 1.3e-74 284.3 299 54.5
Thhalv10007295m.g Eutrema salsugineum HOM05D004376 ORTHO05D005304 1.3e-74 284.3 275 56.4
BcaC05g25947 Brassica carinata HOM05D004376 ORTHO05D005304 1.7e-74 283.9 277 55.6
C05p18990 Brassica napus HOM05D004376 ORTHO05D005304 1.7e-74 283.9 277 55.6
BcaNung05112 Brassica carinata HOM05D004376 ORTHO05D005304 2.9e-74 283.1 246 59.8
BcaB07g32040 Brassica carinata HOM05D004376 ORTHO05D005304 3.7e-74 282.7 295 52.5
AUR62014364 Chenopodium quinoa HOM05D004376 ORTHO05D005304 1.1e-73 281.2 244 59.4
Thhalv10018512m.g Eutrema salsugineum HOM05D004376 ORTHO05D005304 1.9e-73 280.4 263 57.0
ATR0661G260 Amborella trichopoda HOM05D004376 ORTHO05D005304 5.4e-73 278.9 321 49.2
BraA07t31697Z Brassica rapa HOM05D004376 ORTHO05D005304 5.4e-73 278.9 183 71.6
CARHR069660 Cardamine hirsuta HOM05D004376 ORTHO05D005304 5.4e-73 278.9 231 63.6
BcaC08g47290 Brassica carinata HOM05D004376 ORTHO05D005304 9.2e-73 278.1 244 58.2
CARHR020830 Cardamine hirsuta HOM05D004376 ORTHO05D005304 9.2e-73 278.1 255 56.9
BcaNung05111 Brassica carinata HOM05D004376 ORTHO05D005304 1.2e-72 277.7 249 57.4
BolC6t40045H Brassica oleracea HOM05D004376 ORTHO05D005304 1.2e-72 277.7 249 57.4
C06p50060 Brassica napus HOM05D004376 ORTHO05D005304 7.8e-72 275.0 183 71.0
Aa31LG4G6240 Aethionema arabicum HOM05D004376 ORTHO05D005304 1.0e-71 274.6 292 52.1
A07p41680 Brassica napus HOM05D004376 ORTHO05D005304 1.3e-71 274.2 249 57.4
CAN.G11.23 Capsicum annuum HOM05D004376 ORTHO05D005304 1.9e-70 270.4 253 57.7
SEGI_08421 Sequoiadendron giganteum HOM05D004376 ORTHO05D005304 1.1e-68 264.6 244 54.5
FAN11G1577 Fragaria x ananassa HOM05D004376 ORTHO05D005304 6.6e-63 245.4 180 70.0
HanXRQChr14g0428961 Helianthus annuus HOM05D004376 ORTHO05D005304 6.6e-63 245.4 167 68.9
Actinidia29774 Actinidia chinensis HOM05D004376 ORTHO05D005304 9.6e-62 241.5 318 50.0
AagrBONN_evm.TU.Sc2ySwM_228.5747 Anthoceros agrestis HOM05D004376 ORTHO05D005304 1.3e-61 241.1 190 60.5
Ca_21112_v3 Cicer arietinum L. HOM05D004376 ORTHO05D005304 4.8e-61 239.2 289 49.1
Peaxi162Scf00174g01119 Petunia axillaris HOM05D004376 ORTHO05D005304 4.4e-59 232.6 157 73.9
Nitab4.5_0003280g0050 Nicotiana tabacum HOM05D004376 ORTHO05D005304 5.8e-59 232.3 139 79.9
Mapoly0057s0025 Marchantia polymorpha HOM05D004376 ORTHO05D005304 8.4e-58 228.4 201 53.2
Glyma.17G075500 Glycine max HOM05D004376 ORTHO05D005304 2.7e-56 223.4 161 70.2
SMO270G0142 Selaginella moellendorffii HOM05D004376 ORTHO05D005304 1.3e-55 221.1 179 57.5
Pp3c5_14220 Physcomitrium patens HOM05D004376 ORTHO05D005304 6.6e-55 218.8 201 53.7
Solyc04g082070.4 Solanum lycopersicum HOM05D004376 ORTHO05D005304 6.2e-53 212.2 145 71.0
DCAR_016746 Daucus carota HOM05D004376 ORTHO05D005304 8.1e-53 211.8 191 59.7
Atru.chr13.191 Acer truncatum HOM05D004376 ORTHO05D005304 5.3e-52 209.1 112 86.6
Pp3c6_13480 Physcomitrium patens HOM05D004376 ORTHO05D005304 9.0e-52 208.4 167 56.3
Mapoly0001s0557 Marchantia polymorpha HOM05D004376 ORTHO05D005304 1.7e-50 204.1 282 42.2
CBR_g17013 Chara braunii HOM05D004376 ORTHO05D005304 3.5e-48 196.4 192 46.9
BcaB04g17458 Brassica carinata HOM05D004376 ORTHO05D005304 7.4e-46 188.7 129 69.0
BcaB05g23404 Brassica carinata HOM05D004376 ORTHO05D005304 2.8e-45 186.8 131 67.9
CDE02G0983 Ceratophyllum demersum HOM05D004376 ORTHO05D005304 1.5e-43 181.0 120 72.5
Aa31LG7G3290 Aethionema arabicum HOM05D004376 ORTHO05D005304 5.8e-43 179.1 110 76.4
BcaB06g25791 Brassica carinata HOM05D004376 ORTHO05D005304 7.6e-43 178.7 133 66.9
Actinidia37959 Actinidia chinensis HOM05D004376 ORTHO05D005304 2.9e-42 176.8 260 45.4
Sc19g0001720 Simmondsia chinensis HOM05D004376 ORTHO05D005304 1.3e-39 167.9 232 48.3
PRCOL_00003413 Prasinoderma coloniale HOM05D004376 ORTHO05D005304 2.3e-39 167.2 243 40.3
CDE06G1859 Ceratophyllum demersum HOM05D004376 ORTHO05D005304 1.4e-36 157.9 111 73.0
Oeu053188.1 Olea europaea HOM05D004376 ORTHO05D005304 5.3e-36 156.0 200 47.5
CAN.G70.7 Capsicum annuum HOM05D004376 ORTHO05D005304 2.7e-32 143.7 117 59.0
SMO301G0050 Selaginella moellendorffii HOM05D004376 ORTHO05D005304 1.0e-31 141.7 177 43.5
MCO12G479 Micromonas commoda HOM05D004376 ORTHO05D005304 2.2e-26 124.0 181 38.7
Atru.chr13.190 Acer truncatum HOM05D004376 ORTHO05D005304 9.7e-22 108.6 171 44.4
BcaB01g00993 Brassica carinata HOM05D004376 ORTHO05D005304 5.3e-20 102.8 68 69.1
Cfa021661 Carpinus fangiana HOM05D004376 ORTHO05D005304 6.5e-18 95.9 158 37.3
AT1G20290 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 1.0e-10 72.0 66 53.0
CAN.G139.2 Capsicum annuum HOM05D004376 ORTHO05D005304 2.1e-08 64.3 83 43.4
SalBow2G3538 Salvia bowleyana HOM05D006159 ORTHO05D007624 3.0e-07 60.5 90 35.6
Actinidia23185 Actinidia chinensis HOM05D006159 ORTHO05D007624 6.7e-07 59.3 91 38.5
CBR_g51420 Chara braunii HOM05D006159 ORTHO05D007624 1.5e-06 58.2 70 37.1
unitig_22.g5204 Utricularia gibba HOM05D006159 ORTHO05D007624 1.5e-06 58.2 165 24.2
AagrBONN_evm.TU.Sc2ySwM_117.4076 Anthoceros agrestis HOM05D006159 ORTHO05D007624 3.3e-06 57.0 87 32.2
CANSAT54G0267 Cannabis sativa HOM05D006159 ORTHO05D007624 4.4e-06 56.6 61 49.2
Cre06.g292450 Chlamydomonas reinhardtii HOM05D004376 ORTHO05D005304 4.4e-06 56.6 169 26.6
HPP92_011991 Vanilla planifolia HOM05D006159 ORTHO05D007624 4.4e-06 56.6 87 35.6
Zm00001eb016190 Zea mays HOM05D006159 ORTHO05D007624 4.4e-06 56.6 177 27.1
vmacro14626 Vaccinium macrocarpon HOM05D006159 ORTHO05D007624 7.5e-06 55.8 88 36.4
Atru.chr1.2561 Acer truncatum HOM05D006159 ORTHO05D007624 9.7e-06 55.5 162 27.8
CARHR123640 Cardamine hirsuta HOM05D006159 ORTHO05D007624 9.7e-06 55.5 76 39.5
HanXRQChr08g0228561 Helianthus annuus HOM05D006159 ORTHO05D007624 9.7e-06 55.5 103 35.0
Lj2A1097G33 Lonicera japonica HOM05D006159 ORTHO05D007624 9.7e-06 55.5 95 33.7
Mapoly0146s0022 Marchantia polymorpha HOM05D006159 ORTHO05D007624 9.7e-06 55.5 143 25.9
Nitab4.5_0001438g0090 Nicotiana tabacum HOM05D006159 ORTHO05D007624 9.7e-06 55.5 95 35.8
Nitab4.5_0005248g0030 Nicotiana tabacum HOM05D006159 ORTHO05D007624 9.7e-06 55.5 95 35.8
Os03g0338600 Oryza sativa ssp. japonica HOM05D006159 ORTHO05D007624 9.7e-06 55.5 87 35.6


User provided reference genes

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