Gene: AT1G20370

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G20370
  • Transcript Identifier AT1G20370.1
  • Gene Type Coding gene
  • Location Chr1 : 7051846-7053588 : negative

Gene Family Information

  • ID HOM05D004376
  • #Genes/#Species 163/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G20370.1
  • uniprot Q9LN29

Descriptions

  • Description Pseudouridine synthase family protein
  • Computational description Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase I, TruA, N-terminal (InterPro:IPR020094), Pseudouridine synthase I, TruA, alpha/beta domain (InterPro:IPR020097), Pseudouridine synthase I, TruA, C-terminal (InterPro:IPR020095), Pseudouridine synthase I, TruA (InterPro:IPR001406); BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein (TAIR:AT1G76120.1); Has 3883 Blast hits to 3550 proteins in 1359 species: Archae - 140; Bacteria - 2302; Metazoa - 346; Fungi - 312; Plants - 197; Viruses - 0; Other Eukaryotes - 586 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0031119
IEA
Gene OntologytRNA pseudouridine synthesis
GO:0031119
IEA
InterProtRNA pseudouridine synthesis
GO:0008033
IEA
GOA DatabasetRNA processing
GO:0009451
IEA
GOA DatabaseRNA modification
GO:0009451
IEA
InterProRNA modification
GO:0001522
IEA
GOA Databasepseudouridine synthesis
GO:0001522
IEA
InterPropseudouridine synthesis

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
Gene OntologyRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0009982
IEA
GOA Databasepseudouridine synthase activity
GO:0009982
TAS
Gene Ontologypseudouridine synthase activity1
GO:0009982
IEA
InterPropseudouridine synthase activity
GO:0016853
IEA
GOA Databaseisomerase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus
GO:0005829
IDA
GOA Databasecytosol

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001406 Pseudouridine synthase I, TruA
IPR020103 Pseudouridine synthase, catalytic domain superfamily
IPR020094 Pseudouridine synthase TruA/RsuA/RluB/E/F, N-terminal
IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain
IPR041708 Pseudouridine synthase PUS1/ PUS2-like
IPR020095 Pseudouridine synthase I, TruA, C-terminal
Mapman id Description
16.5.3.1 RNA processing.RNA modification.pseudouridylation.tRNA pseudouridine synthase (TruA)