Gene: Zm00001eb016190
General Information
Structural Information
- Species Zea mays
- Gene Identifier Zm00001eb016190
- Transcript Identifier Zm00001eb016190_T001
- Gene Type Coding gene
- Location 1 : 56688639-56693087 : positive
Gene Family Information
- ID HOM05D006159
- #Genes/#Species 129/93
- Phylogenetic origin
- ID ORTHO05D007624
- #Genes/#Species 128/93
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Zm00001eb016190_T001
- pid Zm00001eb016190_P001
- uniprot A0A317YAV8
- uniprot B4FLR5
- uniprot B4FF04
- entrez 100193430
- refseq XM_008652945.1
- refseq NM_001138552.1
- refseq XP_008651167.1
- refseq NP_001132024.1
- V4_identifier Zm00001d029077
Descriptions
- Description Zm00001e001596
- Description Putative tRNA pseudouridine synthase
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:1990481 | IBA | GOA Database | mRNA pseudouridine synthesis | |
| GO:0031119 | IBA IEA | GOA Database | tRNA pseudouridine synthesis | |
| GO:0031119 | IEA | InterPro | tRNA pseudouridine synthesis | |
| GO:0009451 | IEA | GOA Database | RNA modification | |
| GO:0009451 | IEA | InterPro | RNA modification | |
| GO:0001522 | IEA | GOA Database | pseudouridine synthesis | |
| GO:0001522 | IEA | InterPro | pseudouridine synthesis | |
| GO:0008033 | IEA | GOA Database | tRNA processing |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009982 | IBA IEA | GOA Database | pseudouridine synthase activity | |
| GO:0009982 | IEA | InterPro | pseudouridine synthase activity | |
| GO:0003723 | IEA | GOA Database | RNA binding | |
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0106029 | IEA | GOA Database | tRNA pseudouridine synthase activity | |
| GO:0016853 | IEA | GOA Database | isomerase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IBA | GOA Database | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR001406 | Pseudouridine synthase I, TruA |
| IPR020097 | Pseudouridine synthase I, TruA, alpha/beta domain |
| IPR041708 | Pseudouridine synthase PUS1/ PUS2-like |
| IPR020103 | Pseudouridine synthase, catalytic domain superfamily |
| IPR020095 | Pseudouridine synthase I, TruA, C-terminal |
| IPR020094 | Pseudouridine synthase TruA/RsuA/RluB/E/F, N-terminal |
| Mapman id | Description |
|---|---|
| 16.5.3.1 | RNA processing.RNA modification.pseudouridylation.tRNA pseudouridine synthase (TruA) |