Gene: Os03g0338600
General Information
Structural Information
- Species Oryza sativa ssp. japonica
- Gene Identifier Os03g0338600
- Transcript Identifier Os03t0338600-01
- Gene Type Coding gene
- Location chr03 : 12592026-12595592 : negative
Gene Family Information
- ID HOM05D006159
- #Genes/#Species 129/93
- Phylogenetic origin
- ID ORTHO05D007624
- #Genes/#Species 128/93
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Os03t0338600-01
- MSU-ID LOC_Os03g21980.1
- MSU-ID LOC_Os03g21980.2
- uniprot Q10LR0
Descriptions
- Description tRNA pseudouridine synthase family protein.
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0008033 | IEA | GOA Database | tRNA processing | |
| GO:0009451 | IEA | GOA Database | RNA modification | |
| GO:0009451 | IEA | InterPro | RNA modification | |
| GO:0031119 | IBA IEA | GOA Database | tRNA pseudouridine synthesis | |
| GO:0031119 | IEA | InterPro | tRNA pseudouridine synthesis | |
| GO:0001522 | IEA | GOA Database | pseudouridine synthesis | |
| GO:0001522 | IEA | InterPro | pseudouridine synthesis | |
| GO:1990481 | IBA | GOA Database | mRNA pseudouridine synthesis |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016853 | IEA | GOA Database | isomerase activity | |
| GO:0009982 | IBA IEA | GOA Database | pseudouridine synthase activity | |
| GO:0009982 | IEA | InterPro | pseudouridine synthase activity | |
| GO:0003723 | IEA | GOA Database | RNA binding | |
| GO:0003723 | IEA | InterPro | RNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IBA | GOA Database | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR020094 | Pseudouridine synthase TruA/RsuA/RluB/E/F, N-terminal |
| IPR020103 | Pseudouridine synthase, catalytic domain superfamily |
| IPR020097 | Pseudouridine synthase I, TruA, alpha/beta domain |
| IPR020095 | Pseudouridine synthase I, TruA, C-terminal |
| IPR001406 | Pseudouridine synthase I, TruA |
| IPR041708 | Pseudouridine synthase PUS1/ PUS2-like |
| Mapman id | Description |
|---|---|
| 16.5.3.1 | RNA processing.RNA modification.pseudouridylation.tRNA pseudouridine synthase (TruA) |